Rh7CG222900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012831
Physical Location & Seq
Reverse (-)
20574953 .. 20578774
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG222900.1

Sequence Viewer

Length: 717 bp
ATGTTTCATTTTTTGTGTTCTGTAGGTACCCCATGGACAGAGGAGGAACATAGGATGTTTTTACTTGGACTACAGAAACTTGGTAAAGGTGATTGGCGTGGAATCGCTCGCAATTATGTTATTTCAAGAACACCTACTCAAGTGGCTAGCCATGCTCAGAAATATTTCATTAGGCAGTCTAATGTATCACGGAGAAAAAGACGTTCTAGCCTGTTTGATATAGTAGCAGATGATTCAGTTGATACTCCAATGGAACCACTGGACTTCTTACCTGAAAACCATGTAGAAGATGATACTGAAAGCAACCACCCATTGCCTGCTCCTCCAGCTTTGGATGAAGAATGTGAATCAATGGCATCTACCAACTCAGATGGAGAACCTTCCCCTCCAAAGGCTGAGTCAGCGTCATGTTATCCAGTGATGTATCCCACTTATTTCTCACCTTTTCCATTTCCTTTTCCAATGTGGCCTGGATACAGTACTGAGCCAACTAAGGTGGATACACATGAGGTCCTTAAGCCAACGGCAGTACATTCAAAGAGCCCAATTAATGTTGATGAGCTAGTAGGCATGTCGAATCTGAGTATAGGAGAGCCTAACGGTCAAGCCGGTCCGTCCTCGCTCTCACTAAATCTTGTTGGAGGGTCCTCTAGGCAATCGGCTTTCCATGCAAATCCAAGTTCTGGCAGTTCAAATATGAAATCAGGTTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0001067 GO:0001101 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010038 GO:0010150 GO:0010252 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022622 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040008 GO:0042221 GO:0042493 GO:0042592 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045927 GO:0045934 GO:0046677 GO:0046686 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051341 GO:0051354 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2000468 GO:2000469 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

238

Amino Acids

26.05

Weight (kDa)

5.33

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 11 - 56 1.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012831)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47390
fragaria_vesca FvH4_5g19500
malus_domestica MD00G1169600.v1.1 MD06G1054100.v1.1
prunus_persica Prupe.5G064900_v2.0.a1
pyrus_communis pycom04g05450 pycom06g04550
rosa_chinensis RchiOBHm_Chr7g0204081
rosa_laevigata RLG00000003489
rosa_roxburghii Rroxscaffold_3G00253370
rosa_rugosa Rorug07G0080500 Rorug07G0080600 Rorug07G0080700
rosa_samantha Rh7AG210500 Rh7BG209100 Rh7CG222900 Rh7DG217200
rosa_wichuraiana Rw7G018330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 683
AfaI GTAC 3 cut(s) 28, 481, 531
AfiI CCNNNNNNNGG 2 cut(s) 391, 683
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 3 cut(s) 126, 537, 693
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 2 cut(s) 329, 562
AluI AGCT 2 cut(s) 329, 562
AlwNI CAGNNNCTG 1 cut(s) 710
AoxI GGCC 1 cut(s) 467
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AseI ATTAAT 1 cut(s) 549
Asp700I GAANNNNTTC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 511, 611, 645
AsuHPI GGTGA 2 cut(s) 101, 432
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 3 cut(s) 511, 611, 645
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 545
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 471
BciVI GTATCC 3 cut(s) 435, 467, 493
BfaI CTAG 4 cut(s) 147, 207, 563, 651
BfmI CTRYAG 2 cut(s) 21, 71
BfrI CTTAAG 1 cut(s) 515
BfuI GTATCC 3 cut(s) 435, 467, 493
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 3 cut(s) 511, 611, 645
BmgT120I GGNCC 3 cut(s) 511, 611, 645
BmiI GGNNCC 3 cut(s) 28, 255, 646
BmrFI CCNGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 365
BmtI GCTAGC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 683
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 2 cut(s) 264, 416
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 60, 340
BseLI CCNNNNNNNGG 2 cut(s) 391, 683
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 5 cut(s) 170, 381, 387, 474, 572
BseNI ACTGG 2 cut(s) 264, 416
BseRI GAGGAG 2 cut(s) 56, 312
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 391, 683
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 545
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 5 cut(s) 169, 380, 388, 475, 573
BspLI GGNNCC 3 cut(s) 28, 255, 646
BspOI GCTAGC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 2 cut(s) 264, 416
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 479, 602
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 109, 148, 318
BstDEI CTNAG 6 cut(s) 156, 367, 396, 483, 492, 581
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 60, 340
BstMWI GCNNNNNNNGC 4 cut(s) 152, 326, 401, 668
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 21, 71
BsuI GTATCC 3 cut(s) 435, 467, 493
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 60, 340
BtsIMutI CAGTG 2 cut(s) 257, 423
Cac8I GCNNGC 3 cut(s) 109, 148, 318
CaiI CAGNNNCTG 1 cut(s) 710
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 3 cut(s) 511, 611, 645
CpoI CGGWCCG 1 cut(s) 611
CseI GACGC 1 cut(s) 393
Csp6I GTAC 3 cut(s) 27, 480, 530
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CspI CGGWCCG 1 cut(s) 611
CviAII CATG 7 cut(s) 33, 152, 281, 408, 506, 571, 668
CviQI GTAC 3 cut(s) 27, 480, 530
DdeI CTNAG 6 cut(s) 156, 367, 396, 483, 492, 581
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 545
Eco47I GGWCC 3 cut(s) 511, 611, 645
EcoO109I RGGNCCY 2 cut(s) 511, 645
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 7 cut(s) 36, 155, 284, 411, 509, 574, 671
FatI CATG 7 cut(s) 32, 151, 280, 407, 505, 570, 667
FokI GGATG 2 cut(s) 67, 347
FriOI GRGCYC 1 cut(s) 545
FspBI CTAG 4 cut(s) 147, 207, 563, 651
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 609
HgaI GACGC 1 cut(s) 393
Hin1II CATG 7 cut(s) 36, 155, 284, 411, 509, 574, 671
HinfI GANTC 5 cut(s) 102, 233, 347, 398, 577
HpaII CCGG 1 cut(s) 609
HphI GGTGA 2 cut(s) 101, 432
Hpy188I TCNGA 3 cut(s) 159, 370, 582
Hpy188III TCNNGA 2 cut(s) 126, 711
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 479, 602
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 326, 401, 668
HpyF3I CTNAG 6 cut(s) 156, 367, 396, 483, 492, 581
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 7 cut(s) 36, 155, 284, 411, 509, 574, 671
KpnI GGTACC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 325
LweI GCATC 1 cut(s) 365
MaeI CTAG 4 cut(s) 147, 207, 563, 651
MaeII ACGT 1 cut(s) 202
MboII GAAGA 2 cut(s) 299, 350
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 2 cut(s) 112, 546
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 8 cut(s) 34, 37, 333, 396, 502, 628, 635, 658
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 2 cut(s) 516, 549
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 152, 326, 401, 668
NcoI CCATGG 1 cut(s) 32
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 7 cut(s) 36, 155, 284, 411, 509, 574, 671
NlaIV GGNNCC 3 cut(s) 28, 255, 646
NspI RCATGY 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 4 cut(s) 102, 233, 347, 577
PflMI CCANNNNNTGG 1 cut(s) 683
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PpuMI RGGWCCY 2 cut(s) 511, 645
PshBI ATTAAT 1 cut(s) 549
Psp5II RGGWCCY 2 cut(s) 511, 645
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 28, 255, 646
PspPI GGNCC 3 cut(s) 511, 611, 645
PspPPI RGGWCCY 2 cut(s) 511, 645
PstNI CAGNNNCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 28, 481, 531
RsaNI GTAC 3 cut(s) 27, 480, 530
Rsr2I CGGWCCG 1 cut(s) 611
RsrII CGGWCCG 1 cut(s) 611
SaqAI TTAA 2 cut(s) 516, 549
Sau96I GGNCC 3 cut(s) 511, 611, 645
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 1 cut(s) 365
SfcI CTRYAG 2 cut(s) 21, 71
SinI GGWCC 3 cut(s) 511, 611, 645
SmlI CTYRAG 2 cut(s) 138, 515
SmoI CTYRAG 2 cut(s) 138, 515
Sse9I AATT 2 cut(s) 112, 546
SspI AATATT 1 cut(s) 164
SspMI CTAG 4 cut(s) 147, 207, 563, 651
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 479, 602
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 575
TasI AATT 2 cut(s) 112, 546
TatI WGTACW 2 cut(s) 479, 529
TfiI GAWTC 4 cut(s) 102, 233, 347, 577
Tru1I TTAA 2 cut(s) 516, 549
Tru9I TTAA 2 cut(s) 516, 549
TscAI CASTG 2 cut(s) 264, 423
TspDTI ATGAA 3 cut(s) 157, 351, 713
TspGWI ACGGA 2 cut(s) 205, 603
TspRI CASTG 2 cut(s) 264, 423
Van91I CCANNNNNTGG 1 cut(s) 683
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 511, 611, 645
VspI ATTAAT 1 cut(s) 549
XceI RCATGY 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 4 cut(s) 147, 207, 563, 651
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.