Rw7G011590
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
10864564 .. 10866502
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011590.1

Sequence Viewer

Length: 1416 bp
ATGATGAAACCCTACAACATGAAAGATGAGTTCATCCCATTTGAAGCTTCTTCTTCCTCAAAGGGTTACCTTCAAGATTTTCACCATCTTGATAATCAGTTTCATCAATATGCTAATGGGTCCTCATCAAATCCCATGTTTGGGGTCCAAAATCCATGTTTTGAACCTTATTACAATGACAACAATGCCTACACTTGTGACCAAGGCTCACCCACAGATGTAAATTTCTATGAGTGCAAGCCTCTAAACATTGCAGACAATTTGGGACATGGTCAAGTCTTGGACAATTTCCAAAGCTTGAATTTCCCACATCCCAGATCAAATTCCATTGGTCACATGATGGGGATTTCTCATAGGAGTGGTACTAATTTCCTGCCCTTGACAAATTCCCAGGACATTAAGCCTATGAGCTTTGTGGCACCAGATGAAGTCTCTTGCATCAACTCAGAAAATGGTTACTACAAAAGAGCTGGGATCAATCATAAGGGTACTAGTAGATTGTCTACAATAGCAAGGGCAGGGTCAACTTTTAAGGGTCGGAAGAAGAACAATGTGGTCAAGGGTCAATGGACAATTGACGAAGATAGGGTGTTGATTCAGCTGGTTGCACAGTATGGAGTGAGAAAGTGGTCACATATTGCTCAGATGTTGCCGGGAAGGATTGGCAAGCAGTGTAGAGAGAGATGGCATAACCATCTCAGGCCTGATATCAAGAAGGACACATGGAGTGAGGAGGAAGACAAGATACTGATTCAAGCTCATGCAGAGATAGGGAACAAGTGGGCAGAGATTGCAAAGAGACTTCCTGGAAGGACTGAAAACTCCATCAAAAACCACTGGAATGCAACCAAAAGGAGACAATATTCGAAGCGAAAATGCCGCTCCAAGTACCCCAGAGGCTCTCTTCTTCAGGATTACATCAAGAGTTTGAACTTGGACGCGTCACCAAACACCAGCCGCCAGAGAAAAAATAACAACAACAACAACAACAACAGTAGCAATAGTTCACCGGCTGATCACAACAATGCCAGTACTGCCAGCACCAAAGTTCAGTCACAAATCAATGTGGGGTTCAATAGTGAGAGTGATAGCAGGTTGGTTCCGAACTATGAGTTCAGTGAGGAGGACCCGGATTTTTGTTTCGATGAGAACATGTTTCAAGAGGGCTGCAGCATTGATTCTCTGCTTGATGACATTCCTTGTGCTACGGATTTCGGCGAGAATGGTAATGATTTTGATGGGAAAATGATGGTTTCATCAGATCATGAGCCTTTTGCTGTTCATGATGAGAAGAATTTCGAGGTGTTGGCTATGCAAGTGGATTTGGGTTCTGCAGTGATGGAGAGTACTGAAGTGAAGAAGGAGGTGGACTTGGTGGAGATGATGTCTCAAGTCAATGAAGCCGATGATGCCTAG

Protein Analysis

471

Amino Acids

53.38

Weight (kDa)

5.83

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 187 - 233 1.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 190 - 247 3.9e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 239 - 281 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 242 - 293 2.1e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18770
fragaria_vesca FvH4_5g05420
malus_domestica MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica Prupe.5G172400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193411
rosa_laevigata RLG00000004270
rosa_multiflora Rmu_ssc0000092.1_g000001
rosa_roxburghii Rroxscaffold_3G00262120
rosa_rugosa Rorug07G0009300
rosa_samantha Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana Rw7G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1083
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 882
AccI GTMKAC 1 cut(s) 503
AccII CGCG 1 cut(s) 941
AciI CCGC 2 cut(s) 880, 958
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 5 cut(s) 223, 301, 322, 385, 1294
AcuI CTGAAG 2 cut(s) 893, 1371
AfaI GTAC 5 cut(s) 364, 490, 890, 1033, 1348
AfiI CCNNNNNNNGG 2 cut(s) 140, 141
AflIII ACRYGT 2 cut(s) 939, 1152
AgsI TTSAA 8 cut(s) 44, 74, 164, 301, 755, 931, 1075, 1160
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 390, 805
AluBI AGCT 6 cut(s) 47, 297, 411, 470, 601, 758
AluI AGCT 6 cut(s) 47, 297, 411, 470, 601, 758
Alw26I GTCTC 4 cut(s) 436, 793, 850, 1392
AlwI GGATC 1 cut(s) 482
AoxI GGCC 1 cut(s) 701
ApeKI GCWGC 2 cut(s) 1167, 1170
ApoI RAATTY 5 cut(s) 223, 301, 322, 385, 1294
Asp700I GAANNNNTTC 1 cut(s) 1295
AspS9I GGNCC 3 cut(s) 120, 145, 1126
AsuC2I CCSGG 2 cut(s) 654, 1130
AsuHPI GGTGA 4 cut(s) 74, 201, 936, 999
AsuII TTCGAA 1 cut(s) 866
AvaII GGWCC 3 cut(s) 120, 145, 1126
BanI GGYRCC 1 cut(s) 418
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BbsI GAAGAC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 1154, 1182
BccI CCATC 8 cut(s) 93, 334, 678, 702, 833, 1232, 1243, 1333
BciT130I CCWGG 2 cut(s) 392, 807
BclI TGATCA 1 cut(s) 1015
BcnI CCSGG 2 cut(s) 654, 1130
BcoDI GTCTC 4 cut(s) 436, 793, 850, 1392
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 2 cut(s) 492, 1414
BfmI CTRYAG 2 cut(s) 1168, 1332
BfuAI ACCTGC 1 cut(s) 1083
BisI GCNGC 4 cut(s) 880, 958, 1168, 1171
BlsI GCNGC 4 cut(s) 881, 959, 1169, 1172
BmcAI AGTACT 2 cut(s) 1033, 1348
Bme1390I CCNGG 4 cut(s) 392, 654, 807, 1130
Bme18I GGWCC 3 cut(s) 120, 145, 1126
BmgT120I GGNCC 3 cut(s) 120, 145, 1126
BmiI GGNNCC 5 cut(s) 121, 146, 420, 1101, 1128
BmrFI CCNGG 4 cut(s) 392, 654, 807, 1130
BmsI GCATC 2 cut(s) 447, 1399
BpiI GAAGAC 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 1374
BpuMI CCSGG 2 cut(s) 654, 1130
BsaJI CCNNGG 2 cut(s) 202, 390
BsaXI ACNNNNNCTCC 2 cut(s) 1370, 1400
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 141
Bse118I RCCGGY 1 cut(s) 1009
Bse1I ACTGG 2 cut(s) 842, 1029
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 392, 807
BseDI CCNNGG 2 cut(s) 202, 390
BseGI GGATG 2 cut(s) 33, 310
BseLI CCNNNNNNNGG 2 cut(s) 140, 141
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 459, 656, 712
BseNI ACTGG 2 cut(s) 842, 1029
BseRI GAGGAG 2 cut(s) 746, 1136
BseXI GCAGC 2 cut(s) 1154, 1182
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 941
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 3 cut(s) 653, 1010, 1130
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 140, 141
BsmAI GTCTC 4 cut(s) 436, 793, 850, 1392
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 866
Bsp143I GATC 4 cut(s) 317, 474, 1015, 1261
BspACI CCGC 2 cut(s) 880, 958
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 3 cut(s) 458, 655, 711
BspFNI CGCG 1 cut(s) 941
BspHI TCATGA 2 cut(s) 1264, 1282
BspLI GGNNCC 5 cut(s) 121, 146, 420, 1101, 1128
BspMAI CTGCAG 2 cut(s) 1172, 1336
BspMI ACCTGC 1 cut(s) 1083
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 866
BspT107I GGYRCC 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 882
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 1009
BsrI ACTGG 2 cut(s) 842, 1029
BssAI RCCGGY 1 cut(s) 1009
BssECI CCNNGG 2 cut(s) 202, 390
BssMI GATC 4 cut(s) 317, 474, 1015, 1261
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 392, 807
Bst4CI ACNGT 2 cut(s) 612, 995
Bst6I CTCTTC 1 cut(s) 909
BstAPI GCANNNNNTGC 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 866
BstC8I GCNNGC 3 cut(s) 239, 668, 1039
BstDEI CTNAG 3 cut(s) 445, 642, 698
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 2 cut(s) 33, 310
BstFNI CGCG 1 cut(s) 941
BstKTI GATC 4 cut(s) 320, 477, 1018, 1264
BstMAI GTCTC 4 cut(s) 436, 793, 850, 1392
BstMBI GATC 4 cut(s) 317, 474, 1015, 1261
BstMWI GCNNNNNNNGC 3 cut(s) 791, 1034, 1409
BstNI CCWGG 2 cut(s) 392, 807
BstNSI RCATGY 1 cut(s) 1156
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 4 cut(s) 390, 652, 805, 1128
BstSFI CTRYAG 2 cut(s) 1168, 1332
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 2 cut(s) 1154, 1182
BstV2I GAAGAC 1 cut(s) 744
BsuRI GGCC 1 cut(s) 703
BtsCI GGATG 2 cut(s) 33, 310
BtsI GCAGTG 2 cut(s) 677, 1341
BtsIMutI CAGTG 4 cut(s) 677, 835, 1123, 1341
BveI ACCTGC 1 cut(s) 1083
Cac8I GCNNGC 3 cut(s) 239, 668, 1039
CciI TCATGA 2 cut(s) 1264, 1282
Cfr10I RCCGGY 1 cut(s) 1009
Cfr13I GGNCC 3 cut(s) 120, 145, 1126
CseI GACGC 2 cut(s) 930, 947
Csp6I GTAC 5 cut(s) 363, 489, 889, 1032, 1347
CviQI GTAC 5 cut(s) 363, 489, 889, 1032, 1347
DdeI CTNAG 3 cut(s) 445, 642, 698
DpnI GATC 4 cut(s) 319, 476, 1017, 1263
DpnII GATC 4 cut(s) 317, 474, 1015, 1261
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 202
Eco147I AGGCCT 1 cut(s) 703
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 3 cut(s) 120, 145, 1126
Eco57I CTGAAG 2 cut(s) 893, 1371
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 120, 1126
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 390, 805
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaqI GGGAC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 503
Fnu4HI GCNGC 4 cut(s) 880, 958, 1168, 1171
FokI GGATG 2 cut(s) 20, 297
Fsp4HI GCNGC 4 cut(s) 880, 958, 1168, 1171
FspBI CTAG 2 cut(s) 492, 1414
GluI GCNGC 4 cut(s) 880, 958, 1168, 1171
GsaI CCCAGC 1 cut(s) 474
HaeIII GGCC 1 cut(s) 703
HapII CCGG 3 cut(s) 653, 1010, 1130
HgaI GACGC 2 cut(s) 930, 947
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 2 cut(s) 45, 295
HinfI GANTC 3 cut(s) 595, 751, 1178
HpaII CCGG 3 cut(s) 653, 1010, 1130
HphI GGTGA 4 cut(s) 74, 201, 936, 999
Hpy166II GTNNAC 4 cut(s) 504, 525, 1007, 1369
Hpy188I TCNGA 5 cut(s) 448, 540, 645, 1104, 1261
Hpy188III TCNNGA 8 cut(s) 74, 89, 712, 911, 922, 1160, 1265, 1283
Hpy8I GTNNAC 4 cut(s) 504, 525, 1007, 1369
HpyAV CCTTC 5 cut(s) 80, 651, 709, 804, 1354
HpyCH4III ACNGT 2 cut(s) 612, 995
HpyF10VI GCNNNNNNNGC 3 cut(s) 791, 1034, 1409
HpyF3I CTNAG 3 cut(s) 445, 642, 698
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 4 cut(s) 317, 474, 1015, 1261
LmnI GCTCC 1 cut(s) 887
Lsp1109I GCAGC 2 cut(s) 1154, 1182
LweI GCATC 2 cut(s) 447, 1399
MaeI CTAG 2 cut(s) 492, 1414
MaeIII GTNAC 7 cut(s) 65, 197, 332, 455, 630, 942, 1053
MalI GATC 4 cut(s) 319, 476, 1017, 1263
MbiI CCGCTC 1 cut(s) 882
MboI GATC 4 cut(s) 317, 474, 1015, 1261
MfeI CAATTG 1 cut(s) 573
MluCI AATT 9 cut(s) 223, 259, 286, 301, 322, 367, 385, 573, 1294
MluI ACGCGT 1 cut(s) 939
MmeI TCCRAC 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 1295
MseI TTAA 2 cut(s) 399, 531
MslI CAYNNNNRTG 4 cut(s) 108, 357, 840, 1023
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 3 cut(s) 653, 1010, 1130
MspR9I CCNGG 4 cut(s) 392, 654, 807, 1130
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 2 cut(s) 392, 807
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 3 cut(s) 791, 1034, 1409
NciI CCSGG 2 cut(s) 654, 1130
NdeII GATC 4 cut(s) 317, 474, 1015, 1261
NlaIV GGNNCC 5 cut(s) 121, 146, 420, 1101, 1128
NmuCI GTSAC 5 cut(s) 197, 332, 630, 942, 1053
NspI RCATGY 1 cut(s) 1156
NspV TTCGAA 1 cut(s) 866
PagI TCATGA 2 cut(s) 1264, 1282
PceI AGGCCT 1 cut(s) 703
PciI ACATGT 1 cut(s) 1152
PctI GAATGC 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 1295
PfeI GAWTC 3 cut(s) 595, 751, 1178
PflFI GACNNNGTC 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 805
PkrI GCNGC 4 cut(s) 881, 959, 1169, 1172
PpuMI RGGWCCY 2 cut(s) 120, 1126
PscI ACATGT 1 cut(s) 1152
Psp5II RGGWCCY 2 cut(s) 120, 1126
Psp6I CCWGG 2 cut(s) 390, 805
PspEI GGTNACC 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 2 cut(s) 390, 805
PspN4I GGNNCC 5 cut(s) 121, 146, 420, 1101, 1128
PspPI GGNCC 3 cut(s) 120, 145, 1126
PspPPI RGGWCCY 2 cut(s) 120, 1126
PsrI GAACNNNNNNTAC 2 cut(s) 988, 1020
PstI CTGCAG 2 cut(s) 1172, 1336
PsyI GACNNNGTC 1 cut(s) 270
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 5 cut(s) 364, 490, 890, 1033, 1348
RsaNI GTAC 5 cut(s) 363, 489, 889, 1032, 1347
RseI CAYNNNNRTG 4 cut(s) 108, 357, 840, 1023
SaqAI TTAA 2 cut(s) 399, 531
SatI GCNGC 4 cut(s) 880, 958, 1168, 1171
Sau3AI GATC 4 cut(s) 317, 474, 1015, 1261
Sau96I GGNCC 3 cut(s) 120, 145, 1126
ScaI AGTACT 2 cut(s) 1033, 1348
ScrFI CCNGG 4 cut(s) 392, 654, 807, 1130
SfaNI GCATC 2 cut(s) 447, 1399
SfcI CTRYAG 2 cut(s) 1168, 1332
SfuI TTCGAA 1 cut(s) 866
SinI GGWCC 3 cut(s) 120, 145, 1126
SmiMI CAYNNNNRTG 4 cut(s) 108, 357, 840, 1023
SmlI CTYRAG 1 cut(s) 1389
SmoI CTYRAG 1 cut(s) 1389
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 9 cut(s) 223, 259, 286, 301, 322, 367, 385, 573, 1294
SseBI AGGCCT 1 cut(s) 703
SsiI CCGC 2 cut(s) 880, 958
SspI AATATT 1 cut(s) 863
SspMI CTAG 2 cut(s) 492, 1414
StuI AGGCCT 1 cut(s) 703
StyD4I CCNGG 4 cut(s) 390, 652, 805, 1128
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 612, 995
TaqI TCGA 3 cut(s) 866, 1143, 1299
TasI AATT 9 cut(s) 223, 259, 286, 301, 322, 367, 385, 573, 1294
TatI WGTACW 2 cut(s) 1031, 1346
TauI GCSGC 2 cut(s) 882, 960
TfiI GAWTC 3 cut(s) 595, 751, 1178
Tru1I TTAA 2 cut(s) 399, 531
Tru9I TTAA 2 cut(s) 399, 531
TscAI CASTG 4 cut(s) 677, 842, 1123, 1341
TseFI GTSAC 5 cut(s) 197, 332, 630, 942, 1053
TseI GCWGC 2 cut(s) 1167, 1170
Tsp45I GTSAC 5 cut(s) 197, 332, 630, 942, 1053
TspDTI ATGAA 8 cut(s) 20, 22, 35, 92, 441, 1245, 1271, 1413
TspGWI ACGGA 1 cut(s) 1223
TspRI CASTG 4 cut(s) 677, 842, 1123, 1341
Tth111I GACNNNGTC 1 cut(s) 270
VpaK11BI GGWCC 3 cut(s) 120, 145, 1126
XapI RAATTY 5 cut(s) 223, 301, 322, 385, 1294
XceI RCATGY 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 2 cut(s) 492, 1414
ZrmI AGTACT 2 cut(s) 1033, 1348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.