Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015321

Physical Location & Seq

Genomic Coordinates Reverse (-)

11641109 .. 11643057

Gene Structure 1949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG137600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGAAACCCCACAACATGAAAGATGAGTTCATCCCATTTGAAGCTTCTTCTTCCTCAAAGGGTTACCTTCAAGATTTTCACCATCTTGATAATCAGTTTCATCAATATGCTAATGGGTCCTCATCAAATCCCATGTTTGGGGTCCAAAATCCATGTTTTGAACCTTATTACAATGACAACAATGCCTACACTTGTGACCAAGGCTCACCCACAGATGACATTAAGCCTATGAGCTTTGTGGCACCAGATGAAGTCTCTTGCATCAACTCAGAAAATGGTTACTACAAAAGAGCTGGGATCAATCATAAGGGTACTAGTAGATTGTCTACAATAGCAAGGGCAGGGTCAACTTTTAAGGGTCGGAAGAAGAACAATGTGGTCAAGGGTCAATGGACAATTGACGAAGATAGGGTGTTGATTCAGCTGGTTGCACAGTATGGGGTAAGAAAGTGGTCACATATTGCTCAGATGTTGCCGGGAAGGATTGGCAAGCAGTGTAGAGAGAGATGGCATAACCATCTCAGGCCTGATATCAAGAAGGACACATGGAGTGAGGAGGAAGACAAGATACTGATTCAAGCTCATGCAGAGATAGGGAACAAGTGGGCAGAGATTGCAAAGAGACTTCCCGGAAGGACTGAAAACTCCATCAAAAACCACTGGAATGCAACCAAAAGGAGACAATATTCGAAGCGAAAATGCCGCTCCAAGTACCCCAGAGGCTCTCTTCTTCAGGATTACATCAAGAGTTTGAACTTGGACGCGTCACCAAACACCGGCCGCCAGAGAAAAAATAACAACAACAGTAGCAATAGTTCACCGGCTGATCACAACAATGCCAGTACTGCCAGCACCAAAGTTCAGTCACAAATCAATGTGGGGTTCAATAGTGAGAGTGATAGCAGGTTGGTTCCGAACTATGAGTTCAGTGAGGAGGACCCGGATTTTTGTTTCGATGAGAACATGTTTCAAGAGGGCTGCAGCATTGATTCTCTGCTTGATGACATTCCTTGTGCTACGGATTTCGGCGAGAATGGTAATGATTTTGATGGGAAAATGATGGTTTCATCAGATCATGAGCCTTTTTCTGTTCATGATGAGAAGAATTTCGAGGTGTTGGCTATGCAAGTGGATTTGGGTTCTGCAGTGATGGAGAGTACTGAAGTGAAGAAGGAGCTGGACTTGGTGGAGATGATGTCTCAAGTCAATGAAGCCGATGATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

409

Amino Acids

46.45

Weight (kDa)

5.67

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	129 - 175	1.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	132 - 189	3.2e-19	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	181 - 223	9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	184 - 235	1.7e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18770
fragaria_vesca	FvH4_5g05420
malus_domestica	MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica	Prupe.5G172400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193411
rosa_laevigata	RLG00000004270
rosa_multiflora	Rmu_ssc0000092.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262120
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana	Rw7G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	1 cut(s)	767
AciI	CCGC	2 cut(s)	706, 784
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	1108
AcuI	CTGAAG	2 cut(s)	719, 1185
AfaI	GTAC	4 cut(s)	316, 716, 847, 1162
AfiI	CCNNNNNNNGG	3 cut(s)	140, 141, 779
AflIII	ACRYGT	2 cut(s)	765, 966
AgsI	TTSAA	7 cut(s)	44, 74, 164, 581, 757, 889, 974
AhlI	ACTAGT	1 cut(s)	317
AluBI	AGCT	6 cut(s)	47, 237, 296, 427, 584, 1180
AluI	AGCT	6 cut(s)	47, 237, 296, 427, 584, 1180
Alw26I	GTCTC	4 cut(s)	262, 619, 676, 1206
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	527, 781
ApeKI	GCWGC	2 cut(s)	981, 984
ApoI	RAATTY	1 cut(s)	1108
Asp700I	GAANNNNTTC	1 cut(s)	1109
AspS9I	GGNCC	3 cut(s)	120, 145, 940
AsuC2I	CCSGG	3 cut(s)	480, 633, 944
AsuHPI	GGTGA	4 cut(s)	74, 201, 762, 813
AsuII	TTCGAA	1 cut(s)	692
AvaII	GGWCC	3 cut(s)	120, 145, 940
BanI	GGYRCC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	968, 996
BccI	CCATC	7 cut(s)	93, 504, 528, 659, 1046, 1057, 1147
BclI	TGATCA	1 cut(s)	829
BcnI	CCSGG	3 cut(s)	480, 633, 944
BcoDI	GTCTC	4 cut(s)	262, 619, 676, 1206
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	318, 1228
BfmI	CTRYAG	2 cut(s)	982, 1146
BfuAI	ACCTGC	1 cut(s)	897
BisI	GCNGC	4 cut(s)	706, 784, 982, 985
BlsI	GCNGC	4 cut(s)	707, 785, 983, 986
BmcAI	AGTACT	2 cut(s)	847, 1162
Bme1390I	CCNGG	3 cut(s)	480, 633, 944
Bme18I	GGWCC	3 cut(s)	120, 145, 940
BmgT120I	GGNCC	3 cut(s)	120, 145, 940
BmiI	GGNNCC	5 cut(s)	121, 146, 246, 915, 942
BmrFI	CCNGG	3 cut(s)	480, 633, 944
BmsI	GCATC	2 cut(s)	273, 1213
BpiI	GAAGAC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	1188
BpuMI	CCSGG	3 cut(s)	480, 633, 944
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	1184, 1214
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 141, 779
Bse118I	RCCGGY	2 cut(s)	779, 823
Bse1I	ACTGG	2 cut(s)	668, 843
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	140, 141, 779
BseMII	CTCAG	3 cut(s)	285, 482, 538
BseNI	ACTGG	2 cut(s)	668, 843
BseRI	GAGGAG	2 cut(s)	572, 950
BseX3I	CGGCCG	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	968, 996
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	784
BshFI	GGCC	2 cut(s)	529, 783
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	784
BsiSI	CCGG	5 cut(s)	479, 633, 780, 824, 944
BslI	CCNNNNNNNGG	3 cut(s)	140, 141, 779
BsmAI	GTCTC	4 cut(s)	262, 619, 676, 1206
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	529, 783
Bsp119I	TTCGAA	1 cut(s)	692
Bsp143I	GATC	3 cut(s)	300, 829, 1075
BspACI	CCGC	2 cut(s)	706, 784
BspANI	GGCC	2 cut(s)	529, 783
BspCNI	CTCAG	3 cut(s)	284, 481, 537
BspFNI	CGCG	1 cut(s)	767
BspHI	TCATGA	2 cut(s)	1078, 1096
BspLI	GGNNCC	5 cut(s)	121, 146, 246, 915, 942
BspMAI	CTGCAG	2 cut(s)	986, 1150
BspMI	ACCTGC	1 cut(s)	897
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	708
BsrFI	RCCGGY	2 cut(s)	779, 823
BsrI	ACTGG	2 cut(s)	668, 843
BssAI	RCCGGY	2 cut(s)	779, 823
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	300, 829, 1075
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	438, 809
Bst6I	CTCTTC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	494, 853
BstDEI	CTNAG	3 cut(s)	271, 468, 524
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	767
BstKTI	GATC	3 cut(s)	303, 832, 1078
BstMAI	GTCTC	4 cut(s)	262, 619, 676, 1206
BstMBI	GATC	3 cut(s)	300, 829, 1075
BstMCI	CGRYCG	1 cut(s)	784
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 848, 1223
BstNSI	RCATGY	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	478, 631, 942
BstSFI	CTRYAG	2 cut(s)	982, 1146
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	968, 996
BstV2I	GAAGAC	1 cut(s)	570
BstZI	CGGCCG	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	529, 783
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	2 cut(s)	503, 1155
BtsIMutI	CAGTG	4 cut(s)	503, 661, 937, 1155
BveI	ACCTGC	1 cut(s)	897
Cac8I	GCNNGC	2 cut(s)	494, 853
CciI	TCATGA	2 cut(s)	1078, 1096
Cfr10I	RCCGGY	2 cut(s)	779, 823
Cfr13I	GGNCC	3 cut(s)	120, 145, 940
CseI	GACGC	2 cut(s)	756, 773
Csp6I	GTAC	4 cut(s)	315, 715, 846, 1161
CviAII	CATG	8 cut(s)	19, 136, 156, 549, 587, 967, 1079, 1097
CviQI	GTAC	4 cut(s)	315, 715, 846, 1161
DdeI	CTNAG	3 cut(s)	271, 468, 524
DpnI	GATC	3 cut(s)	302, 831, 1077
DpnII	GATC	3 cut(s)	300, 829, 1075
EaeI	YGGCCR	1 cut(s)	781
EagI	CGGCCG	1 cut(s)	781
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
EclXI	CGGCCG	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	3 cut(s)	120, 145, 940
Eco52I	CGGCCG	1 cut(s)	781
Eco57I	CTGAAG	2 cut(s)	719, 1185
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	2 cut(s)	120, 940
EcoO65I	GGTNACC	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	8 cut(s)	22, 139, 159, 552, 590, 970, 1082, 1100
FatI	CATG	8 cut(s)	18, 135, 155, 548, 586, 966, 1078, 1096
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	706, 784, 982, 985
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	706, 784, 982, 985
FspBI	CTAG	2 cut(s)	318, 1228
GluI	GCNGC	4 cut(s)	706, 784, 982, 985
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	529, 783
HapII	CCGG	5 cut(s)	479, 633, 780, 824, 944
HgaI	GACGC	2 cut(s)	756, 773
Hin1II	CATG	8 cut(s)	22, 139, 159, 552, 590, 970, 1082, 1100
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	3 cut(s)	421, 577, 992
HpaII	CCGG	5 cut(s)	479, 633, 780, 824, 944
HphI	GGTGA	4 cut(s)	74, 201, 762, 813
Hpy166II	GTNNAC	3 cut(s)	330, 351, 821
Hpy188I	TCNGA	5 cut(s)	274, 366, 471, 918, 1075
Hpy188III	TCNNGA	8 cut(s)	74, 89, 538, 737, 748, 974, 1079, 1097
Hpy8I	GTNNAC	3 cut(s)	330, 351, 821
HpyAV	CCTTC	5 cut(s)	80, 477, 535, 630, 1168
HpyCH4III	ACNGT	2 cut(s)	438, 809
HpyCH4V	TGCA	8 cut(s)	264, 434, 590, 620, 671, 984, 1129, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 848, 1223
HpyF3I	CTNAG	3 cut(s)	271, 468, 524
Hsp92II	CATG	8 cut(s)	22, 139, 159, 552, 590, 970, 1082, 1100
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	300, 829, 1075
LmnI	GCTCC	2 cut(s)	713, 1177
Lsp1109I	GCAGC	2 cut(s)	968, 996
LweI	GCATC	2 cut(s)	273, 1213
MaeI	CTAG	2 cut(s)	318, 1228
MaeIII	GTNAC	6 cut(s)	65, 197, 281, 456, 768, 867
MalI	GATC	3 cut(s)	302, 831, 1077
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	3 cut(s)	300, 829, 1075
MfeI	CAATTG	1 cut(s)	399
MluCI	AATT	2 cut(s)	399, 1108
MluI	ACGCGT	1 cut(s)	765
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	9 cut(s)	67, 133, 550, 553, 716, 928, 931, 970, 1108
MroXI	GAANNNNTTC	1 cut(s)	1109
MseI	TTAA	2 cut(s)	225, 357
MslI	CAYNNNNRTG	3 cut(s)	108, 666, 837
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	5 cut(s)	479, 633, 780, 824, 944
MspR9I	CCNGG	3 cut(s)	480, 633, 944
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	673
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	3 cut(s)	617, 848, 1223
NciI	CCSGG	3 cut(s)	480, 633, 944
NdeII	GATC	3 cut(s)	300, 829, 1075
NlaIII	CATG	8 cut(s)	22, 139, 159, 552, 590, 970, 1082, 1100
NlaIV	GGNNCC	5 cut(s)	121, 146, 246, 915, 942
NmuCI	GTSAC	4 cut(s)	197, 456, 768, 867
NspI	RCATGY	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	692
PagI	TCATGA	2 cut(s)	1078, 1096
PceI	AGGCCT	1 cut(s)	529
PciI	ACATGT	1 cut(s)	966
PctI	GAATGC	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	1109
PfeI	GAWTC	3 cut(s)	421, 577, 992
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	707, 785, 983, 986
PpuMI	RGGWCCY	2 cut(s)	120, 940
PscI	ACATGT	1 cut(s)	966
Psp5II	RGGWCCY	2 cut(s)	120, 940
PspEI	GGTNACC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	5 cut(s)	121, 146, 246, 915, 942
PspPI	GGNCC	3 cut(s)	120, 145, 940
PspPPI	RGGWCCY	2 cut(s)	120, 940
PsrI	GAACNNNNNNTAC	2 cut(s)	802, 834
PstI	CTGCAG	2 cut(s)	986, 1150
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	4 cut(s)	316, 716, 847, 1162
RsaNI	GTAC	4 cut(s)	315, 715, 846, 1161
RseI	CAYNNNNRTG	3 cut(s)	108, 666, 837
SaqAI	TTAA	2 cut(s)	225, 357
SatI	GCNGC	4 cut(s)	706, 784, 982, 985
Sau3AI	GATC	3 cut(s)	300, 829, 1075
Sau96I	GGNCC	3 cut(s)	120, 145, 940
ScaI	AGTACT	2 cut(s)	847, 1162
ScrFI	CCNGG	3 cut(s)	480, 633, 944
SfaNI	GCATC	2 cut(s)	273, 1213
SfcI	CTRYAG	2 cut(s)	982, 1146
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	3 cut(s)	120, 145, 940
SmiMI	CAYNNNNRTG	3 cut(s)	108, 666, 837
SmlI	CTYRAG	1 cut(s)	1203
SmoI	CTYRAG	1 cut(s)	1203
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	2 cut(s)	399, 1108
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	2 cut(s)	706, 784
SspI	AATATT	1 cut(s)	689
SspMI	CTAG	2 cut(s)	318, 1228
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	478, 631, 942
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	438, 809
TaqI	TCGA	3 cut(s)	692, 957, 1113
TasI	AATT	2 cut(s)	399, 1108
TatI	WGTACW	2 cut(s)	845, 1160
TauI	GCSGC	2 cut(s)	708, 786
TfiI	GAWTC	3 cut(s)	421, 577, 992
Tru1I	TTAA	2 cut(s)	225, 357
Tru9I	TTAA	2 cut(s)	225, 357
TscAI	CASTG	4 cut(s)	503, 668, 937, 1155
TseFI	GTSAC	4 cut(s)	197, 456, 768, 867
TseI	GCWGC	2 cut(s)	981, 984
Tsp45I	GTSAC	4 cut(s)	197, 456, 768, 867
TspDTI	ATGAA	8 cut(s)	20, 22, 35, 92, 267, 1059, 1085, 1227
TspGWI	ACGGA	1 cut(s)	1037
TspRI	CASTG	4 cut(s)	503, 668, 937, 1155
VpaK11BI	GGWCC	3 cut(s)	120, 145, 940
XapI	RAATTY	1 cut(s)	1108
XceI	RCATGY	1 cut(s)	970
XmiI	GTMKAC	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	1109
XspI	CTAG	2 cut(s)	318, 1228
ZrmI	AGTACT	2 cut(s)	847, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.