Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015321

Physical Location & Seq

Genomic Coordinates Reverse (-)

10140268 .. 10141201

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGATTAACAAGCTAAGAGAAAACCTGGCCTCCCAAATCCCATTACTAGTGCCAGAGAACAACAGCTACATGATGAAACCCTACAACATGAAAGATGAGTTCATCCCATTTGAAGCTTCTTCTTCCTCAAAGGGTTACCTTCAAGATTTTCACCATCTTGATAATCAGTTTCATCAATATGCTAATGGGTCCTCATCAAATCCCATGTTTGGGGTCCAAAACCCATGTTTTGAACCTTATTACAATGACAACAATGCCTACACTTGTGACCAAGGCTCACCCACAGATGTAAATTTCTATGAGTGCAAGCCTCTAAACATTGCAGACAATTTGGGACATGGTCAAGTCTTGGACAATTTCCAAAGCTTGAATTTCCCACATCCCAGATCAAATTCCATTGGTCACATGATGGGGATTTCTCATAGGAGTGGTACTAATTTCCTGCCCTTGACAAATTCCCAGGACATTAAGCCTATGAGCTTTGTGGCACCAGATGAAGTCTCTTGCATCAACTCAGAAAATGGTTACTACAAAAGAGCTGGGATCAATCATAAGGGTACTAGTAGATTGTCTACAATAGCAAGGGCAGGGTCAACTTTTAAGGGTCGGAAGAAGAACAATGTGGTCAAGGGTCAATGGACAATTGACGAAGATAGGGTGTTGATTCAGCTGGTTGCACAGTATGGAGTGAGAAAGTGGTCACATATTGCTCAGATGTTGCCGGGAAGGATTGGCAAGCAGTGTAGAGAGAGATGGCATAACCACCTCAGGCCTGATATCAAGGTAGTTTTGATTGAACCAAAAAAATCTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

272

Amino Acids

30.97

Weight (kDa)

8.86

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	211 - 257	7.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	214 - 262	1.3e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18770
fragaria_vesca	FvH4_5g05420
malus_domestica	MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica	Prupe.5G172400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193411
rosa_laevigata	RLG00000004270
rosa_multiflora	Rmu_ssc0000092.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262120
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana	Rw7G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	575
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	4 cut(s)	295, 373, 394, 457
AfaI	GTAC	2 cut(s)	436, 562
AfiI	CCNNNNNNNGG	2 cut(s)	212, 213
AgsI	TTSAA	5 cut(s)	116, 146, 236, 373, 800
AhlI	ACTAGT	2 cut(s)	49, 563
AjnI	CCWGG	2 cut(s)	27, 462
AluBI	AGCT	7 cut(s)	16, 69, 119, 369, 483, 542, 673
AluI	AGCT	7 cut(s)	16, 69, 119, 369, 483, 542, 673
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	2 cut(s)	30, 773
ApoI	RAATTY	4 cut(s)	295, 373, 394, 457
AspS9I	GGNCC	2 cut(s)	192, 217
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	146, 273
AvaII	GGWCC	2 cut(s)	192, 217
AxyI	CCTNAGG	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	490
BccI	CCATC	3 cut(s)	165, 406, 750
BciT130I	CCWGG	2 cut(s)	29, 464
BcnI	CCSGG	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	508
BcuI	ACTAGT	2 cut(s)	49, 563
BfaI	CTAG	2 cut(s)	50, 564
Bme1390I	CCNGG	3 cut(s)	29, 464, 726
Bme18I	GGWCC	2 cut(s)	192, 217
BmgT120I	GGNCC	2 cut(s)	192, 217
BmiI	GGNNCC	3 cut(s)	193, 218, 492
BmrFI	CCNGG	3 cut(s)	29, 464, 726
BmsI	GCATC	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	274, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 213
Bse21I	CCTNAGG	1 cut(s)	770
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	29, 464
BseDI	CCNNGG	2 cut(s)	274, 462
BseGI	GGATG	2 cut(s)	105, 382
BseLI	CCNNNNNNNGG	2 cut(s)	212, 213
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	531, 728, 784
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	32, 775
BshNI	GGYRCC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	212, 213
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	32, 775
Bsp143I	GATC	2 cut(s)	389, 546
BspANI	GGCC	2 cut(s)	32, 775
BspCNI	CTCAG	3 cut(s)	530, 727, 783
BspLI	GGNNCC	3 cut(s)	193, 218, 492
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	274, 462
BssMI	GATC	2 cut(s)	389, 546
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	29, 464
Bst4CI	ACNGT	1 cut(s)	684
BstC8I	GCNNGC	2 cut(s)	311, 740
BstDEI	CTNAG	4 cut(s)	17, 517, 714, 770
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	105, 382
BstKTI	GATC	2 cut(s)	392, 549
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	2 cut(s)	389, 546
BstNI	CCWGG	2 cut(s)	29, 464
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	27, 462, 724
Bsu36I	CCTNAGG	1 cut(s)	770
BsuRI	GGCC	2 cut(s)	32, 775
BtsCI	GGATG	2 cut(s)	105, 382
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	2 cut(s)	311, 740
Cfr13I	GGNCC	2 cut(s)	192, 217
Csp6I	GTAC	2 cut(s)	435, 561
CviAII	CATG	6 cut(s)	73, 91, 208, 228, 341, 409
CviQI	GTAC	2 cut(s)	435, 561
DdeI	CTNAG	4 cut(s)	17, 517, 714, 770
DpnI	GATC	2 cut(s)	391, 548
DpnII	GATC	2 cut(s)	389, 546
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	192, 217
Eco81I	CCTNAGG	1 cut(s)	770
Eco91I	GGTNACC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	192
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	27, 462
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	6 cut(s)	76, 94, 211, 231, 344, 412
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	72, 90, 207, 227, 340, 408
FblI	GTMKAC	1 cut(s)	575
FokI	GGATG	2 cut(s)	92, 369
FspBI	CTAG	2 cut(s)	50, 564
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	32, 775
HapII	CCGG	1 cut(s)	725
Hin1II	CATG	6 cut(s)	76, 94, 211, 231, 344, 412
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	2 cut(s)	117, 367
HinfI	GANTC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	2 cut(s)	146, 273
Hpy166II	GTNNAC	2 cut(s)	576, 597
Hpy188I	TCNGA	3 cut(s)	520, 612, 717
Hpy188III	TCNNGA	2 cut(s)	146, 161
Hpy8I	GTNNAC	2 cut(s)	576, 597
HpyAV	CCTTC	2 cut(s)	152, 723
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4V	TGCA	4 cut(s)	309, 326, 510, 680
HpyF3I	CTNAG	4 cut(s)	17, 517, 714, 770
Hsp92II	CATG	6 cut(s)	76, 94, 211, 231, 344, 412
Kzo9I	GATC	2 cut(s)	389, 546
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	50, 564
MaeIII	GTNAC	5 cut(s)	137, 269, 404, 527, 702
MalI	GATC	2 cut(s)	391, 548
MboI	GATC	2 cut(s)	389, 546
MboII	GAAGA	5 cut(s)	114, 117, 625, 628, 665
MfeI	CAATTG	1 cut(s)	645
MluCI	AATT	8 cut(s)	295, 331, 358, 373, 394, 439, 457, 645
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	5 cut(s)	43, 139, 205, 324, 779
MseI	TTAA	3 cut(s)	9, 471, 603
MslI	CAYNNNNRTG	2 cut(s)	180, 429
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	3 cut(s)	29, 464, 726
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	29, 464
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	2 cut(s)	389, 546
NlaIII	CATG	6 cut(s)	76, 94, 211, 231, 344, 412
NlaIV	GGNNCC	3 cut(s)	193, 218, 492
NmuCI	GTSAC	3 cut(s)	269, 404, 702
PceI	AGGCCT	1 cut(s)	775
PfeI	GAWTC	1 cut(s)	667
PflFI	GACNNNGTC	1 cut(s)	342
PpuMI	RGGWCCY	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	27, 462
PspEI	GGTNACC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	27, 462
PspN4I	GGNNCC	3 cut(s)	193, 218, 492
PspPI	GGNCC	2 cut(s)	192, 217
PspPPI	RGGWCCY	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsyI	GACNNNGTC	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	2 cut(s)	436, 562
RsaNI	GTAC	2 cut(s)	435, 561
RseI	CAYNNNNRTG	2 cut(s)	180, 429
SaqAI	TTAA	3 cut(s)	9, 471, 603
Sau3AI	GATC	2 cut(s)	389, 546
Sau96I	GGNCC	2 cut(s)	192, 217
ScrFI	CCNGG	3 cut(s)	29, 464, 726
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	2 cut(s)	192, 217
SmiMI	CAYNNNNRTG	2 cut(s)	180, 429
SpeI	ACTAGT	2 cut(s)	49, 563
Sse9I	AATT	8 cut(s)	295, 331, 358, 373, 394, 439, 457, 645
SseBI	AGGCCT	1 cut(s)	775
SspMI	CTAG	2 cut(s)	50, 564
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	3 cut(s)	27, 462, 724
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	684
TasI	AATT	8 cut(s)	295, 331, 358, 373, 394, 439, 457, 645
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	3 cut(s)	9, 471, 603
Tru9I	TTAA	3 cut(s)	9, 471, 603
TscAI	CASTG	1 cut(s)	749
TseFI	GTSAC	3 cut(s)	269, 404, 702
Tsp45I	GTSAC	3 cut(s)	269, 404, 702
TspDTI	ATGAA	5 cut(s)	92, 94, 107, 164, 513
TspRI	CASTG	1 cut(s)	749
Tth111I	GACNNNGTC	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	192, 217
XapI	RAATTY	4 cut(s)	295, 373, 394, 457
XmiI	GTMKAC	1 cut(s)	575
XspI	CTAG	2 cut(s)	50, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.