Rroxscaffold_3G00262120
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
56218679 .. 56220699
2021 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00262120.1

Sequence Viewer

Length: 1455 bp
ATGGAGCTTAACAAGCTAAGAGAAAACCTGGCCTCCCAAATCCCATTACTAGTGCCAGAGAACAACAGCTACGTGATGAAACCGTACAACACGAAAGATGACTTCACCCCATTTGAAGCTTCTTCTTCCTCAAAGGGTTACCTTCAAGATTTTCACCATCTTGATAATCAGTTTCATCAATATGCTAATGGGTCCTCATCAAATTCCATGTTTGGGATCCAAAACCCCTGTTTTGAACCTTATTACAATGACAACAATGCCTACACTTGTGACCAAGGCTCACCCACAGATGTAAATTTCTATGAGTGCAAGCCTCTATACATTGCAGACAATTTGGGACATGGTCAAGTCTTGGACAATTTCCAAAGCTTGAATTTCCCACATCCCAGATCAAATTCCATTGGTCACATGATGGGGATTTCTCATAGGAGTGGTACTAATTTCCTGCCCTTGACAAATTCCCAGGACATTAAGCCTATGAGCTTTGTGGTACCAGATGAAGTCTCTTGCATCAACTCAGAAAATGGGTACTACAAAAGAGCTGGGATCAATCATAAGGGTACTAGTAGATTGTCTACAATAGCAAGGGCAGGGTCATCTTTTAAGGGTCGGAAAAAGAACAGTGTGGTCAAGGGTCAATGGACGATTGACGAAGATAGGGTGTTGATTCAGCTGGTTGCACAGTATGGAGTGAGAAAGTGGTCACATATTGCTCAGATGTTGCCGGGAAGGATTGGCAAGCAGTGTAGAGAGAGATGGCATAACCACCTCAGGCCTGACATCAAGAAGGACACATGGAGTGAGGAGGAAGACAAGATACTGATTCAAGCTCATGCAGAGATAGGAAACAAGTGGGCAGAGATTGCAAAGAGACTTCCCGGAAGGACTGAAAACTCCATCAAAAACCACTGGAATGCAACCAAAAGGAGACAATATTCGAAGCGAAAATGCCGCTCCAAGTACCCTAGAGGCTCACTTCTTCAGGATTACATCAAGAGTTTGAACTTGGACGCGTCACCAAACACCGGCCGCCAGAGAAAAATAACAACAACAACAACAGTAGCAATAGTTCACCGGCTGATCACAACAATGCCATCACAAACCAATGTGGGGTTCAATAGTGAGAATGATAGGTCGGTTCCGAACTATGAGTTCAGTGAGGAGGACCCGGATTTTTGTTTTGATGAGAAAATGTTTCAAGAGGGCTGCAGCATTGATTCTCTGCTTGATGACATTCCTTGTGCTACGGATTTCTGCGAGAATGGTAATGATTTTGATGGGAAATTGATAGGTTCATCAGGTCATCAGCCTGTTCCTGTTGATGATGAGAAGAATTTCGAGATGTTGGATATGCAAGGGGATTTGGGTTCTGCGGTGATGGAGAGTACTGAAGTGAAGAAGGAGCTGGACTTGGTAGAGATGATGTCTCAAGTCAATTATGCCGATGATGCCTAG

Protein Analysis

484

Amino Acids

54.99

Weight (kDa)

5.95

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 211 - 257 1.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 214 - 271 4e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 263 - 305 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 266 - 317 2.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18770
fragaria_vesca FvH4_5g05420
malus_domestica MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica Prupe.5G172400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193411
rosa_laevigata RLG00000004270
rosa_multiflora Rmu_ssc0000092.1_g000001
rosa_roxburghii Rroxscaffold_3G00262120
rosa_rugosa Rorug07G0009300
rosa_samantha Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana Rw7G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 954
AccI GTMKAC 1 cut(s) 575
AccII CGCG 1 cut(s) 1013
AciI CCGC 3 cut(s) 952, 1030, 1373
AclWI GGATC 3 cut(s) 211, 224, 554
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 6 cut(s) 202, 295, 373, 394, 457, 1333
AcuI CTGAAG 2 cut(s) 965, 1410
AfaI GTAC 7 cut(s) 86, 436, 492, 530, 562, 962, 1387
AfiI CCNNNNNNNGG 3 cut(s) 213, 1025, 1110
AflIII ACRYGT 1 cut(s) 1011
AgsI TTSAA 8 cut(s) 116, 146, 236, 373, 827, 1003, 1117, 1199
AhlI ACTAGT 2 cut(s) 49, 563
AjnI CCWGG 2 cut(s) 27, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
Alw26I GTCTC 4 cut(s) 508, 865, 922, 1431
AlwI GGATC 3 cut(s) 211, 224, 554
AoxI GGCC 3 cut(s) 30, 773, 1027
ApeKI GCWGC 2 cut(s) 1206, 1209
ApoI RAATTY 6 cut(s) 202, 295, 373, 394, 457, 1333
Asp700I GAANNNNTTC 1 cut(s) 1334
Asp718I GGTACC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 192, 1165
AsuC2I CCSGG 3 cut(s) 726, 879, 1169
AsuHPI GGTGA 6 cut(s) 97, 146, 273, 1008, 1064, 1387
AsuII TTCGAA 1 cut(s) 938
AvaII GGWCC 2 cut(s) 192, 1165
AxyI CCTNAGG 1 cut(s) 770
BamHI GGATCC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
BbsI GAAGAC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 1193, 1221
BccI CCATC 7 cut(s) 165, 406, 750, 905, 1102, 1271, 1372
BciT130I CCWGG 2 cut(s) 29, 464
BclI TGATCA 1 cut(s) 1080
BcnI CCSGG 3 cut(s) 726, 879, 1169
BcoDI GTCTC 4 cut(s) 508, 865, 922, 1431
BcuI ACTAGT 2 cut(s) 49, 563
BfaI CTAG 4 cut(s) 50, 564, 966, 1453
BfmI CTRYAG 1 cut(s) 1207
BisI GCNGC 4 cut(s) 952, 1030, 1207, 1210
BlsI GCNGC 4 cut(s) 953, 1031, 1208, 1211
BmcAI AGTACT 1 cut(s) 1387
Bme1390I CCNGG 5 cut(s) 29, 464, 726, 879, 1169
Bme18I GGWCC 2 cut(s) 192, 1165
BmgT120I GGNCC 2 cut(s) 192, 1165
BmiI GGNNCC 5 cut(s) 193, 218, 492, 1140, 1167
BmrFI CCNGG 5 cut(s) 29, 464, 726, 879, 1169
BmsI GCATC 2 cut(s) 519, 1438
BpiI GAAGAC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 1413
BpuMI CCSGG 3 cut(s) 726, 879, 1169
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 274, 462
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 1025, 1110
Bse118I RCCGGY 2 cut(s) 1025, 1074
Bse1I ACTGG 1 cut(s) 914
Bse21I CCTNAGG 1 cut(s) 770
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 29, 464
BseDI CCNNGG 2 cut(s) 274, 462
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 3 cut(s) 213, 1025, 1110
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 531, 728, 784
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 2 cut(s) 818, 1175
BseX3I CGGCCG 1 cut(s) 1027
BseXI GCAGC 2 cut(s) 1193, 1221
BseYI CCCAGC 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 1013
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 3 cut(s) 32, 775, 1029
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 1030
BsiSI CCGG 5 cut(s) 725, 879, 1026, 1075, 1169
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 213, 1025, 1110
BsmAI GTCTC 4 cut(s) 508, 865, 922, 1431
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 3 cut(s) 32, 775, 1029
Bsp119I TTCGAA 1 cut(s) 938
Bsp143I GATC 4 cut(s) 216, 389, 546, 1080
BspACI CCGC 3 cut(s) 952, 1030, 1373
BspANI GGCC 3 cut(s) 32, 775, 1029
BspCNI CTCAG 3 cut(s) 530, 727, 783
BspFNI CGCG 1 cut(s) 1013
BspLI GGNNCC 5 cut(s) 193, 218, 492, 1140, 1167
BspMAI CTGCAG 1 cut(s) 1211
BspPI GGATC 3 cut(s) 211, 224, 554
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 490
BsrBI CCGCTC 1 cut(s) 954
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 1025, 1074
BsrI ACTGG 1 cut(s) 914
BssAI RCCGGY 2 cut(s) 1025, 1074
BssECI CCNNGG 2 cut(s) 274, 462
BssMI GATC 4 cut(s) 216, 389, 546, 1080
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 29, 464
Bst4CI ACNGT 4 cut(s) 84, 623, 684, 1060
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBAI YACGTR 1 cut(s) 73
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 2 cut(s) 311, 740
BstDEI CTNAG 4 cut(s) 17, 517, 714, 770
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 1013
BstKTI GATC 4 cut(s) 219, 392, 549, 1083
BstMAI GTCTC 4 cut(s) 508, 865, 922, 1431
BstMBI GATC 4 cut(s) 216, 389, 546, 1080
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 3 cut(s) 13, 863, 1448
BstNI CCWGG 2 cut(s) 29, 464
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 5 cut(s) 27, 462, 724, 877, 1167
BstSFI CTRYAG 1 cut(s) 1207
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 2 cut(s) 1193, 1221
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 1027
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 3 cut(s) 32, 775, 1029
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 4 cut(s) 628, 749, 907, 1162
Cac8I GCNNGC 2 cut(s) 311, 740
Cfr10I RCCGGY 2 cut(s) 1025, 1074
Cfr13I GGNCC 2 cut(s) 192, 1165
CseI GACGC 2 cut(s) 1002, 1019
Csp6I GTAC 7 cut(s) 85, 435, 491, 529, 561, 961, 1386
CviAII CATG 5 cut(s) 208, 341, 409, 795, 833
CviQI GTAC 7 cut(s) 85, 435, 491, 529, 561, 961, 1386
DdeI CTNAG 4 cut(s) 17, 517, 714, 770
DpnI GATC 4 cut(s) 218, 391, 548, 1082
DpnII GATC 4 cut(s) 216, 389, 546, 1080
EaeI YGGCCR 1 cut(s) 1027
EagI CGGCCG 1 cut(s) 1027
EclXI CGGCCG 1 cut(s) 1027
Eco130I CCWWGG 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 775
Eco47I GGWCC 2 cut(s) 192, 1165
Eco52I CGGCCG 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 965, 1410
Eco81I CCTNAGG 1 cut(s) 770
Eco91I GGTNACC 1 cut(s) 137
EcoO109I RGGNCCY 2 cut(s) 192, 1165
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 27, 462
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 5 cut(s) 211, 344, 412, 798, 836
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 207, 340, 408, 794, 832
FbaI TGATCA 1 cut(s) 1080
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 4 cut(s) 952, 1030, 1207, 1210
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 4 cut(s) 952, 1030, 1207, 1210
FspBI CTAG 4 cut(s) 50, 564, 966, 1453
GluI GCNGC 4 cut(s) 952, 1030, 1207, 1210
GsaI CCCAGC 1 cut(s) 546
HaeIII GGCC 3 cut(s) 32, 775, 1029
HapII CCGG 5 cut(s) 725, 879, 1026, 1075, 1169
HgaI GACGC 2 cut(s) 1002, 1019
Hin1II CATG 5 cut(s) 211, 344, 412, 798, 836
HindIII AAGCTT 2 cut(s) 117, 367
HinfI GANTC 3 cut(s) 667, 823, 1217
HpaII CCGG 5 cut(s) 725, 879, 1026, 1075, 1169
HphI GGTGA 6 cut(s) 97, 146, 273, 1008, 1064, 1387
Hpy166II GTNNAC 2 cut(s) 576, 1072
Hpy188I TCNGA 4 cut(s) 520, 612, 717, 1143
Hpy188III TCNNGA 7 cut(s) 146, 161, 784, 983, 994, 1199, 1339
Hpy8I GTNNAC 2 cut(s) 576, 1072
HpyAV CCTTC 5 cut(s) 152, 723, 781, 876, 1393
HpyCH4III ACNGT 4 cut(s) 84, 623, 684, 1060
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 9 cut(s) 309, 326, 510, 680, 836, 866, 917, 1209, 1354
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 863, 1448
HpyF3I CTNAG 4 cut(s) 17, 517, 714, 770
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 5 cut(s) 211, 344, 412, 798, 836
KpnI GGTACC 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 216, 389, 546, 1080
LmnI GCTCC 3 cut(s) 4, 959, 1402
Lsp1109I GCAGC 2 cut(s) 1193, 1221
LweI GCATC 2 cut(s) 519, 1438
MaeI CTAG 4 cut(s) 50, 564, 966, 1453
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 5 cut(s) 137, 269, 404, 702, 1014
MalI GATC 4 cut(s) 218, 391, 548, 1082
MbiI CCGCTC 1 cut(s) 954
MboI GATC 4 cut(s) 216, 389, 546, 1080
MboII GAAGA 7 cut(s) 114, 117, 665, 821, 971, 1342, 1408
MflI RGATCY 1 cut(s) 216
MluI ACGCGT 1 cut(s) 1011
MmeI TCCRAC 2 cut(s) 590, 1326
MroXI GAANNNNTTC 1 cut(s) 1334
MseI TTAA 3 cut(s) 9, 471, 603
MslI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1088
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 5 cut(s) 725, 879, 1026, 1075, 1169
MspR9I CCNGG 5 cut(s) 29, 464, 726, 879, 1169
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 29, 464
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 3 cut(s) 13, 863, 1448
NciI CCSGG 3 cut(s) 726, 879, 1169
NdeII GATC 4 cut(s) 216, 389, 546, 1080
NlaIII CATG 5 cut(s) 211, 344, 412, 798, 836
NlaIV GGNNCC 5 cut(s) 193, 218, 492, 1140, 1167
NmuCI GTSAC 4 cut(s) 269, 404, 702, 1014
NspV TTCGAA 1 cut(s) 938
PceI AGGCCT 1 cut(s) 775
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1334
PfeI GAWTC 3 cut(s) 667, 823, 1217
PflFI GACNNNGTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 877
PkrI GCNGC 4 cut(s) 953, 1031, 1208, 1211
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 2 cut(s) 192, 1165
Psp5II RGGWCCY 2 cut(s) 192, 1165
Psp6I CCWGG 2 cut(s) 27, 462
PspEI GGTNACC 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 27, 462
PspN4I GGNNCC 5 cut(s) 193, 218, 492, 1140, 1167
PspPI GGNCC 2 cut(s) 192, 1165
PspPPI RGGWCCY 2 cut(s) 192, 1165
PsrI GAACNNNNNNTAC 4 cut(s) 53, 85, 1053, 1085
PstI CTGCAG 1 cut(s) 1211
PsuI RGATCY 1 cut(s) 216
PsyI GACNNNGTC 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 7 cut(s) 86, 436, 492, 530, 562, 962, 1387
RsaNI GTAC 7 cut(s) 85, 435, 491, 529, 561, 961, 1386
RseI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1088
SaqAI TTAA 3 cut(s) 9, 471, 603
SatI GCNGC 4 cut(s) 952, 1030, 1207, 1210
Sau3AI GATC 4 cut(s) 216, 389, 546, 1080
Sau96I GGNCC 2 cut(s) 192, 1165
ScaI AGTACT 1 cut(s) 1387
ScrFI CCNGG 5 cut(s) 29, 464, 726, 879, 1169
SfaNI GCATC 2 cut(s) 519, 1438
SfcI CTRYAG 1 cut(s) 1207
SfuI TTCGAA 1 cut(s) 938
SinI GGWCC 2 cut(s) 192, 1165
SmiMI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1088
SmlI CTYRAG 1 cut(s) 1428
SmoI CTYRAG 1 cut(s) 1428
SpeI ACTAGT 2 cut(s) 49, 563
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 3 cut(s) 952, 1030, 1373
SspI AATATT 1 cut(s) 935
SspMI CTAG 4 cut(s) 50, 564, 966, 1453
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 5 cut(s) 27, 462, 724, 877, 1167
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 4 cut(s) 84, 623, 684, 1060
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 938, 1338
TatI WGTACW 1 cut(s) 1385
TauI GCSGC 2 cut(s) 954, 1032
TfiI GAWTC 3 cut(s) 667, 823, 1217
Tru1I TTAA 3 cut(s) 9, 471, 603
Tru9I TTAA 3 cut(s) 9, 471, 603
TscAI CASTG 4 cut(s) 628, 749, 914, 1162
TseFI GTSAC 4 cut(s) 269, 404, 702, 1014
TseI GCWGC 2 cut(s) 1206, 1209
Tsp45I GTSAC 4 cut(s) 269, 404, 702, 1014
TspDTI ATGAA 4 cut(s) 92, 164, 513, 1284
TspGWI ACGGA 1 cut(s) 1262
TspRI CASTG 4 cut(s) 628, 749, 914, 1162
Tth111I GACNNNGTC 1 cut(s) 342
VpaK11BI GGWCC 2 cut(s) 192, 1165
XapI RAATTY 6 cut(s) 202, 295, 373, 394, 457, 1333
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 1334
XspI CTAG 4 cut(s) 50, 564, 966, 1453
ZrmI AGTACT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.