Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015321

Physical Location & Seq

Genomic Coordinates Reverse (-)

14691784 .. 14693582

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATGAAACTCTACAACATGAAAGATGAGTTTCCCTTTGAAGCTTCTTCATCATCATCAAAGGGTAATTATAATTACCTTCAAGATTTTCACCATCTTGATCACCAGTTTCAGGTTAATGGGTCTTCATCAAATCCCATGTTTGGGGTCCAAAACCCATGTTTTGATCCTTACAATGACACAACTTACACATACGAAGCTTCAACTACAGATGTTAAATTTTATGAGTGTAAGTCTCTTAATGCAGAAACAAATATGGGACATGGTCAAGTCTTGGACAACTTTCAAAGTGGTTCAGGGTCCTTGAATTTCCCAACTCACACATCAAATCCACTTGATCATTTGATGGGCTCATCTCATAGGAGTGCAACTAATTTCCTGCCCTTGGATTACCAAGATATTAAACCCATGAATTTTGTGGTGCCAGATGAAGTTTCATGCATTAACAATACAGATCAAAATGGGTATTACAAAAAATTTGGCATGAATGGTAAGAGCAGAGTGTCCACATTAACAAGAGGGTCCACTTACAAAGGTCGGAAGAAGTCAAATGTAGTCAAGGGCCAGTGGACAATTGAAGAAGATAGGCTCTTAATTCAACTGGTTGAACAATATGGAGTGAGAAAATGGTCTCACATTGCCCAAATGTTGCCCGGAAGGATTGGCAAGCAGTGTAGAGAGAGATGGCATAACCACCTAAGGCCTGACATCAAGAAGGATACATGGAGTGAGGAGGAGGACAAGATACTGATTCAAGCTCATGCAGAAATAGGAAACAAGTGGGCAGAAATTGCCAAGAGATTGCCTGGGAGGACAGAAAACTCCATCAAGAACCACTGGAATGCAACCAAAAGAAGGCAATATTCGAAGCGAAAATGTCGATCAAAGTACCCCAGAGGCTCTCTTCTGCAAGAATACATCAAGAGCTTAAACTTAGACTCAACAGGCAGCAGCACAGGGCGCCAGAGAAAGAACAAGTCAGGCAACAACAGTGCCACATCACCAAACAACATGGCCCCCAGCAGCACCGAATCACATACTCAACAGACACAAAACAACGTGGGATTTTCATGCGCAAATGATCGGTTGGTTCCAAACTATGATTTCAACGAGGACCCGGATTTCTGTTTCGACGATAACATGTTTCAAGAAGGGTGCAGCATTGATTCTCTCCTTGATGACATCCCTTGTGCCCCTGTTCTTGGTGAGAACAATGATGATTTTGATGGTAAAATAATGGCCCAAGCTTCTGTTGTTGCTGATGAGGAGAAAGATTTTGAGATGGAGATGCAGGTGGATGTGGATGTGGGTCCAGTGATGGAGAGTAGTGAAGTAAAGAAGGAGCTGGATTTGGTGGAGATGATATCTCAAGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

460

Amino Acids

52.22

Weight (kDa)

5.68

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18770
fragaria_vesca	FvH4_5g05420
malus_domestica	MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica	Prupe.5G172400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193411
rosa_laevigata	RLG00000004270
rosa_multiflora	Rmu_ssc0000092.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262120
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana	Rw7G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AarI	CACCTGC	1 cut(s)	1282
Acc16I	TGCGCA	1 cut(s)	1075
Acc36I	ACCTGC	1 cut(s)	1282
AccB1I	GGYRCC	2 cut(s)	421, 960
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	4 cut(s)	218, 307, 412, 476
AcyI	GRCGYC	1 cut(s)	961
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	6 cut(s)	112, 143, 144, 385, 855, 1202
AflIII	ACRYGT	1 cut(s)	1140
AjnI	CCWGG	1 cut(s)	805
AluBI	AGCT	6 cut(s)	44, 200, 758, 927, 1247, 1345
AluI	AGCT	6 cut(s)	44, 200, 758, 927, 1247, 1345
Alw26I	GTCTC	2 cut(s)	240, 636
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	4 cut(s)	562, 701, 1014, 1239
ApeKI	GCWGC	4 cut(s)	948, 951, 1023, 1158
ApoI	RAATTY	4 cut(s)	218, 307, 412, 476
AspLEI	GCGC	2 cut(s)	963, 1076
AspS9I	GGNCC	8 cut(s)	148, 300, 522, 562, 1015, 1114, 1240, 1310
AsuC2I	CCSGG	2 cut(s)	654, 1118
AsuHPI	GGTGA	4 cut(s)	83, 95, 993, 1217
AsuII	TTCGAA	1 cut(s)	866
AvaII	GGWCC	5 cut(s)	148, 300, 522, 1114, 1310
AxyI	CCTNAGG	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	1195
BanI	GGYRCC	2 cut(s)	421, 960
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	960, 963, 1035, 1170
BccI	CCATC	7 cut(s)	102, 340, 678, 833, 1220, 1276, 1312
BciT130I	CCWGG	1 cut(s)	807
BciVI	GTATCC	1 cut(s)	712
BclI	TGATCA	2 cut(s)	100, 337
BcnI	CCSGG	2 cut(s)	654, 1118
BcoDI	GTCTC	2 cut(s)	240, 636
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	964
BfuAI	ACCTGC	1 cut(s)	1282
BfuI	GTATCC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	949, 952, 1024, 1159
BlsI	GCNGC	4 cut(s)	950, 953, 1025, 1160
Bme1390I	CCNGG	3 cut(s)	654, 807, 1118
Bme18I	GGWCC	5 cut(s)	148, 300, 522, 1114, 1310
BmgT120I	GGNCC	8 cut(s)	148, 300, 522, 562, 1015, 1114, 1240, 1310
BmiI	GGNNCC	9 cut(s)	149, 301, 423, 523, 962, 1017, 1092, 1116, 1311
BmrFI	CCNGG	3 cut(s)	654, 807, 1118
BmsI	GCATC	1 cut(s)	1278
BpiI	GAAGAC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	1353
BpuMI	CCSGG	2 cut(s)	654, 1118
BsaHI	GRCGYC	1 cut(s)	961
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	384, 806
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 143, 144, 385, 855, 1202
Bse1I	ACTGG	5 cut(s)	106, 565, 606, 842, 1313
Bse21I	CCTNAGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	384, 806
BseGI	GGATG	3 cut(s)	1182, 1303, 1309
BseLI	CCNNNNNNNGG	6 cut(s)	112, 143, 144, 385, 855, 1202
BseMI	GCAATG	1 cut(s)	636
BseNI	ACTGG	5 cut(s)	106, 565, 606, 842, 1313
BseRI	GAGGAG	3 cut(s)	746, 749, 1280
BseSI	GKGCMC	1 cut(s)	1195
BseXI	GCAGC	4 cut(s)	960, 963, 1035, 1170
BseYI	CCCAGC	1 cut(s)	1019
BsgI	GTGCAG	1 cut(s)	1177
BshFI	GGCC	4 cut(s)	564, 703, 1016, 1241
BshNI	GGYRCC	2 cut(s)	421, 960
BsiSI	CCGG	2 cut(s)	654, 1118
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	6 cut(s)	112, 143, 144, 385, 855, 1202
BsmAI	GTCTC	2 cut(s)	240, 636
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	4 cut(s)	564, 703, 1016, 1241
Bso31I	GGTCTC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	353, 1195
Bsp143I	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
BspANI	GGCC	4 cut(s)	564, 703, 1016, 1241
BspLI	GGNNCC	9 cut(s)	149, 301, 423, 523, 962, 1017, 1092, 1116, 1311
BspMI	ACCTGC	1 cut(s)	1282
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	2 cut(s)	421, 960
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	5 cut(s)	106, 565, 606, 842, 1313
BssECI	CCNNGG	2 cut(s)	384, 806
BssMI	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
BssNI	GRCGYC	1 cut(s)	961
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	992
Bst6I	CTCTTC	1 cut(s)	909
BstACI	GRCGYC	1 cut(s)	961
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	2 cut(s)	698, 934
BstF5I	GGATG	3 cut(s)	1182, 1303, 1309
BstH2I	RGCGCY	1 cut(s)	964
BstHHI	GCGC	2 cut(s)	963, 1076
BstKTI	GATC	6 cut(s)	103, 169, 340, 457, 884, 1084
BstMAI	GTCTC	2 cut(s)	240, 636
BstMBI	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	791, 960
BstNI	CCWGG	1 cut(s)	807
BstNSI	RCATGY	1 cut(s)	1144
BstSCI	CCNGG	3 cut(s)	652, 805, 1116
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	1195
BstV1I	GCAGC	4 cut(s)	960, 963, 1035, 1170
BstV2I	GAAGAC	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	698
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	4 cut(s)	564, 703, 1016, 1241
BtsCI	GGATG	3 cut(s)	1182, 1303, 1309
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	5 cut(s)	572, 677, 835, 997, 1320
BveI	ACCTGC	1 cut(s)	1282
Cac8I	GCNNGC	1 cut(s)	668
CfoI	GCGC	2 cut(s)	963, 1076
Cfr13I	GGNCC	8 cut(s)	148, 300, 522, 562, 1015, 1114, 1240, 1310
Csp6I	GTAC	1 cut(s)	889
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	2 cut(s)	698, 934
DinI	GGCGCC	1 cut(s)	962
DpnI	GATC	6 cut(s)	102, 168, 339, 456, 883, 1083
DpnII	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	1365
Eco47I	GGWCC	5 cut(s)	148, 300, 522, 1114, 1310
Eco81I	CCTNAGG	1 cut(s)	698
EcoO109I	RGGNCCY	2 cut(s)	300, 1114
EcoRII	CCWGG	1 cut(s)	805
EcoRV	GATATC	1 cut(s)	1365
EcoT14I	CCWWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	962
EheI	GGCGCC	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	384
FaqI	GGGAC	1 cut(s)	273
FbaI	TGATCA	2 cut(s)	100, 337
Fnu4HI	GCNGC	4 cut(s)	949, 952, 1024, 1159
FokI	GGATG	3 cut(s)	1169, 1310, 1316
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	949, 952, 1024, 1159
FspI	TGCGCA	1 cut(s)	1075
GlaI	GCGC	2 cut(s)	962, 1075
GluI	GCNGC	4 cut(s)	949, 952, 1024, 1159
GsaI	CCCAGC	1 cut(s)	1023
HaeII	RGCGCY	1 cut(s)	964
HaeIII	GGCC	4 cut(s)	564, 703, 1016, 1241
HapII	CCGG	2 cut(s)	654, 1118
HhaI	GCGC	2 cut(s)	963, 1076
Hin1I	GRCGYC	1 cut(s)	961
Hin6I	GCGC	2 cut(s)	961, 1074
HinP1I	GCGC	2 cut(s)	961, 1074
HindIII	AAGCTT	3 cut(s)	42, 198, 1245
HinfI	GANTC	4 cut(s)	751, 938, 1031, 1166
HpaII	CCGG	2 cut(s)	654, 1118
HphI	GGTGA	4 cut(s)	83, 95, 993, 1217
Hpy166II	GTNNAC	4 cut(s)	507, 525, 570, 1375
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	6 cut(s)	83, 98, 712, 829, 922, 1148
Hpy8I	GTNNAC	4 cut(s)	507, 525, 570, 1375
Hpy99I	CGWCG	1 cut(s)	1136
HpyAV	CCTTC	6 cut(s)	89, 651, 709, 849, 1145, 1333
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4IV	ACGT	1 cut(s)	1059
HpyCH4V	TGCA	8 cut(s)	245, 368, 441, 764, 845, 910, 1158, 1291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	791, 960
HpyF3I	CTNAG	2 cut(s)	698, 934
HpySE526I	ACGT	1 cut(s)	1059
Hsp92I	GRCGYC	1 cut(s)	961
HspAI	GCGC	2 cut(s)	961, 1074
KasI	GGCGCC	1 cut(s)	960
Ksp22I	TGATCA	2 cut(s)	100, 337
Kzo9I	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
LmnI	GCTCC	1 cut(s)	1342
Lsp1109I	GCAGC	4 cut(s)	960, 963, 1035, 1170
LweI	GCATC	1 cut(s)	1278
MaeII	ACGT	1 cut(s)	1059
MalI	GATC	6 cut(s)	102, 168, 339, 456, 883, 1083
MboI	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
MboII	GAAGA	6 cut(s)	39, 117, 553, 590, 593, 896
MfeI	CAATTG	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	353, 1195
Mly113I	GGCGCC	1 cut(s)	961
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	8 cut(s)	512, 724, 727, 730, 804, 890, 1105, 1258
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	8 cut(s)	117, 216, 240, 402, 444, 512, 593, 929
MslI	CAYNNNNRTG	2 cut(s)	363, 840
MspI	CCGG	2 cut(s)	654, 1118
MspR9I	CCNGG	3 cut(s)	654, 807, 1118
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	1 cut(s)	807
MwoI	GCNNNNNNNGC	2 cut(s)	791, 960
NarI	GGCGCC	1 cut(s)	961
NciI	CCSGG	2 cut(s)	654, 1118
NdeII	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
NlaIV	GGNNCC	9 cut(s)	149, 301, 423, 523, 962, 1017, 1092, 1116, 1311
NsbI	TGCGCA	1 cut(s)	1075
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	1144
NspV	TTCGAA	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	1282
PceI	AGGCCT	1 cut(s)	703
PciI	ACATGT	1 cut(s)	1140
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	3 cut(s)	751, 1031, 1166
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	4 cut(s)	950, 953, 1025, 1160
PleI	GAGTC	1 cut(s)	932
PluTI	GGCGCC	1 cut(s)	964
PpsI	GAGTC	1 cut(s)	932
PpuMI	RGGWCCY	2 cut(s)	300, 1114
PscI	ACATGT	1 cut(s)	1140
PsiI	TTATAA	1 cut(s)	72
Psp5II	RGGWCCY	2 cut(s)	300, 1114
Psp6I	CCWGG	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	9 cut(s)	149, 301, 423, 523, 962, 1017, 1092, 1116, 1311
PspPI	GGNCC	8 cut(s)	148, 300, 522, 562, 1015, 1114, 1240, 1310
PspPPI	RGGWCCY	2 cut(s)	300, 1114
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	2 cut(s)	363, 840
SaqAI	TTAA	8 cut(s)	117, 216, 240, 402, 444, 512, 593, 929
SatI	GCNGC	4 cut(s)	949, 952, 1024, 1159
Sau3AI	GATC	6 cut(s)	100, 166, 337, 454, 881, 1081
Sau96I	GGNCC	8 cut(s)	148, 300, 522, 562, 1015, 1114, 1240, 1310
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	3 cut(s)	654, 807, 1118
SduI	GDGCHC	2 cut(s)	353, 1195
SfaNI	GCATC	1 cut(s)	1278
SfcI	CTRYAG	1 cut(s)	207
SfoI	GGCGCC	1 cut(s)	962
SfuI	TTCGAA	1 cut(s)	866
SinI	GGWCC	5 cut(s)	148, 300, 522, 1114, 1310
SmiMI	CAYNNNNRTG	2 cut(s)	363, 840
SmlI	CTYRAG	1 cut(s)	1368
SmoI	CTYRAG	1 cut(s)	1368
SseBI	AGGCCT	1 cut(s)	703
SspDI	GGCGCC	1 cut(s)	960
SspI	AATATT	1 cut(s)	863
StuI	AGGCCT	1 cut(s)	703
StyD4I	CCNGG	3 cut(s)	652, 805, 1116
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	992
TaiI	ACGT	1 cut(s)	1062
TaqI	TCGA	3 cut(s)	866, 880, 1131
TfiI	GAWTC	3 cut(s)	751, 1031, 1166
Tru1I	TTAA	8 cut(s)	117, 216, 240, 402, 444, 512, 593, 929
Tru9I	TTAA	8 cut(s)	117, 216, 240, 402, 444, 512, 593, 929
TscAI	CASTG	5 cut(s)	572, 677, 842, 997, 1320
TseI	GCWGC	4 cut(s)	948, 951, 1023, 1158
TspDTI	ATGAA	9 cut(s)	20, 35, 39, 117, 425, 426, 444, 500, 1059
TspRI	CASTG	5 cut(s)	572, 677, 842, 997, 1320
Tth111I	GACNNNGTC	1 cut(s)	264
VpaK11BI	GGWCC	5 cut(s)	148, 300, 522, 1114, 1310
XapI	RAATTY	4 cut(s)	218, 307, 412, 476
XceI	RCATGY	1 cut(s)	1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.