Rmu_ssc0000092.1_g000001
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000092.1
Physical Location & Seq
Forward (+)
525 .. 2628
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000092.1_g000001.1.cds

Sequence Viewer

Length: 1476 bp
atggagattaacaagctaagagaaaacctggcctcccaaatcccattactagtgccagagaacaacagctacatgatgaaaccccacaacatgaaagatgagttcatcccatttgaagcttcttcttcctcaaagggttaccttcaagattttcaccatcttgataatcagtttcatcaatatgctaatgggtcctcatcaaatcccatgtttggggtccaaaatccatgttttgaaccttattacaatgacaacaatgcctacacttgtgaccaaggctcacccacagatgtaaatttctatgagtgcaagcctctaaacattgcagacaatttgggacatggtcaagtcttggacaacttccaaagcttgaatttcccacatcccagatcaaattccattggtcacatgatggggatttctcataggagtggtactaatttcctgcccttgacaaattcccaggacattaagcctatgagctttgtggcaccagatgaagtctcttgcatcaactcagaaaatggttactacaaaagagctgggatcaatcataagggtactagtcgattgtctacaatagcaagggcagggtcaacttttaagggtcggaagaagaacaatgtggtcaagggtcaatggacaattgacgaagatagggtgttgattcagctggttgcacagtatggggtaagaaagtggtcacatattgctcagatgttgccgggaaggattggcaagcagtgtagagagagatggcataaccatctcaggcctgatatcaagaaggacacatggagtgaggaggaagacaagatactgattcaagctcatgcagagatagggaacaagtgggcagagattgcaaagagacttcccggaaggactgaaaactccatcaaaaaccactggaatgcaaccaaaaggagacaatattcgaagcgaaaatgccgctccaagtaccccagaggctctcttcttcaggattacatcaagagtttgaacttggacgcgtcaccaaacaccggccgccagagaaaaaataacaacaacagtagcaatagttcaccggctgatcacaacaatgccagtactgccagcaccaaagttcagtcacaaatcaatgtggggttcaatagtgagagtgatagcaggttggttccgaactatgagttcagtgaggaggacccggatttttgtttcgatgagaacatgtttcaagagggctgcagcattgattctctgcttgatgacattccttgtgctacggatttcggcgagaatggtaatgattttgatgggaaaatgatggtttcatcagatcatgagcctttttctgttcatgatgagaagaatttcgaggtgttggctatgcaagtggatttgggttctgcagtgatggagagtactgaagtgaagaaggagctggacttggtggagatgatgtctcaagtcaatgaagccgatgatgcctag

Protein Analysis

491

Amino Acids

55.67

Weight (kDa)

5.81

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18770
fragaria_vesca FvH4_5g05420
malus_domestica MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica Prupe.5G172400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193411
rosa_laevigata RLG00000004270
rosa_multiflora Rmu_ssc0000092.1_g000001
rosa_roxburghii Rroxscaffold_3G00262120
rosa_rugosa Rorug07G0009300
rosa_samantha Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana Rw7G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1143
AccB1I GGYRCC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 954
AccI GTMKAC 1 cut(s) 575
AccII CGCG 1 cut(s) 1013
AciI CCGC 2 cut(s) 952, 1030
AclWI GGATC 1 cut(s) 554
AcoI YGGCCR 1 cut(s) 1027
AcsI RAATTY 5 cut(s) 295, 373, 394, 457, 1354
AcuI CTGAAG 2 cut(s) 965, 1431
AfaI GTAC 5 cut(s) 436, 562, 962, 1093, 1408
AfiI CCNNNNNNNGG 3 cut(s) 212, 213, 1025
AflIII ACRYGT 2 cut(s) 1011, 1212
AgsI TTSAA 8 cut(s) 116, 146, 236, 373, 827, 1003, 1135, 1220
AhlI ACTAGT 2 cut(s) 49, 563
AjnI CCWGG 2 cut(s) 27, 462
AluBI AGCT 9 cut(s) 16, 69, 119, 369, 483, 542, 673, 830, 1426
AluI AGCT 9 cut(s) 16, 69, 119, 369, 483, 542, 673, 830, 1426
Alw26I GTCTC 4 cut(s) 508, 865, 922, 1452
AlwI GGATC 1 cut(s) 554
AoxI GGCC 3 cut(s) 30, 773, 1027
ApeKI GCWGC 2 cut(s) 1227, 1230
ApoI RAATTY 5 cut(s) 295, 373, 394, 457, 1354
Asp700I GAANNNNTTC 1 cut(s) 1355
AspS9I GGNCC 3 cut(s) 192, 217, 1186
AsuC2I CCSGG 3 cut(s) 726, 879, 1190
AsuHPI GGTGA 4 cut(s) 146, 273, 1008, 1059
AsuII TTCGAA 1 cut(s) 938
AvaII GGWCC 3 cut(s) 192, 217, 1186
BanI GGYRCC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
BbsI GAAGAC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 1214, 1242
BccI CCATC 8 cut(s) 165, 406, 750, 774, 905, 1292, 1303, 1393
BciT130I CCWGG 2 cut(s) 29, 464
BclI TGATCA 1 cut(s) 1075
BcnI CCSGG 3 cut(s) 726, 879, 1190
BcoDI GTCTC 4 cut(s) 508, 865, 922, 1452
BcuI ACTAGT 2 cut(s) 49, 563
BfaI CTAG 3 cut(s) 50, 564, 1474
BfmI CTRYAG 2 cut(s) 1228, 1392
BfuAI ACCTGC 1 cut(s) 1143
BisI GCNGC 4 cut(s) 952, 1030, 1228, 1231
BlsI GCNGC 4 cut(s) 953, 1031, 1229, 1232
BmcAI AGTACT 2 cut(s) 1093, 1408
Bme1390I CCNGG 5 cut(s) 29, 464, 726, 879, 1190
Bme18I GGWCC 3 cut(s) 192, 217, 1186
BmgT120I GGNCC 3 cut(s) 192, 217, 1186
BmiI GGNNCC 5 cut(s) 193, 218, 492, 1161, 1188
BmrFI CCNGG 5 cut(s) 29, 464, 726, 879, 1190
BmsI GCATC 2 cut(s) 519, 1459
BpiI GAAGAC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 1434
BpuMI CCSGG 3 cut(s) 726, 879, 1190
BsaJI CCNNGG 2 cut(s) 274, 462
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 1430, 1460
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 213, 1025
Bse118I RCCGGY 2 cut(s) 1025, 1069
Bse1I ACTGG 2 cut(s) 914, 1089
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 29, 464
BseDI CCNNGG 2 cut(s) 274, 462
BseGI GGATG 2 cut(s) 105, 382
BseLI CCNNNNNNNGG 3 cut(s) 212, 213, 1025
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 531, 728, 784
BseNI ACTGG 2 cut(s) 914, 1089
BseRI GAGGAG 2 cut(s) 818, 1196
BseX3I CGGCCG 1 cut(s) 1027
BseXI GCAGC 2 cut(s) 1214, 1242
BseYI CCCAGC 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 1013
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 3 cut(s) 32, 775, 1029
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 1030
BsiSI CCGG 5 cut(s) 725, 879, 1026, 1070, 1190
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 212, 213, 1025
BsmAI GTCTC 4 cut(s) 508, 865, 922, 1452
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 3 cut(s) 32, 775, 1029
Bsp119I TTCGAA 1 cut(s) 938
Bsp143I GATC 4 cut(s) 389, 546, 1075, 1321
BspACI CCGC 2 cut(s) 952, 1030
BspANI GGCC 3 cut(s) 32, 775, 1029
BspCNI CTCAG 3 cut(s) 530, 727, 783
BspFNI CGCG 1 cut(s) 1013
BspHI TCATGA 2 cut(s) 1324, 1342
BspLI GGNNCC 5 cut(s) 193, 218, 492, 1161, 1188
BspMAI CTGCAG 2 cut(s) 1232, 1396
BspMI ACCTGC 1 cut(s) 1143
BspPI GGATC 1 cut(s) 554
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 490
BsrBI CCGCTC 1 cut(s) 954
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 1025, 1069
BsrI ACTGG 2 cut(s) 914, 1089
BssAI RCCGGY 2 cut(s) 1025, 1069
BssECI CCNNGG 2 cut(s) 274, 462
BssMI GATC 4 cut(s) 389, 546, 1075, 1321
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 29, 464
Bst4CI ACNGT 2 cut(s) 684, 1055
Bst6I CTCTTC 1 cut(s) 981
BstAPI GCANNNNNTGC 1 cut(s) 863
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 3 cut(s) 311, 740, 1099
BstDEI CTNAG 4 cut(s) 17, 517, 714, 770
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 2 cut(s) 105, 382
BstFNI CGCG 1 cut(s) 1013
BstKTI GATC 4 cut(s) 392, 549, 1078, 1324
BstMAI GTCTC 4 cut(s) 508, 865, 922, 1452
BstMBI GATC 4 cut(s) 389, 546, 1075, 1321
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 3 cut(s) 863, 1094, 1469
BstNI CCWGG 2 cut(s) 29, 464
BstNSI RCATGY 1 cut(s) 1216
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 5 cut(s) 27, 462, 724, 877, 1188
BstSFI CTRYAG 2 cut(s) 1228, 1392
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 2 cut(s) 1214, 1242
BstV2I GAAGAC 1 cut(s) 816
BstZI CGGCCG 1 cut(s) 1027
BsuRI GGCC 3 cut(s) 32, 775, 1029
BtsCI GGATG 2 cut(s) 105, 382
BtsI GCAGTG 2 cut(s) 749, 1401
BtsIMutI CAGTG 4 cut(s) 749, 907, 1183, 1401
BveI ACCTGC 1 cut(s) 1143
Cac8I GCNNGC 3 cut(s) 311, 740, 1099
CciI TCATGA 2 cut(s) 1324, 1342
Cfr10I RCCGGY 2 cut(s) 1025, 1069
Cfr13I GGNCC 3 cut(s) 192, 217, 1186
CseI GACGC 2 cut(s) 1002, 1019
Csp6I GTAC 5 cut(s) 435, 561, 961, 1092, 1407
CviQI GTAC 5 cut(s) 435, 561, 961, 1092, 1407
DdeI CTNAG 4 cut(s) 17, 517, 714, 770
DpnI GATC 4 cut(s) 391, 548, 1077, 1323
DpnII GATC 4 cut(s) 389, 546, 1075, 1321
EaeI YGGCCR 1 cut(s) 1027
EagI CGGCCG 1 cut(s) 1027
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
EclXI CGGCCG 1 cut(s) 1027
Eco130I CCWWGG 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 775
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 3 cut(s) 192, 217, 1186
Eco52I CGGCCG 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 965, 1431
Eco91I GGTNACC 1 cut(s) 137
EcoO109I RGGNCCY 2 cut(s) 192, 1186
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 27, 462
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaqI GGGAC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 1075
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 4 cut(s) 952, 1030, 1228, 1231
FokI GGATG 2 cut(s) 92, 369
Fsp4HI GCNGC 4 cut(s) 952, 1030, 1228, 1231
FspBI CTAG 3 cut(s) 50, 564, 1474
GluI GCNGC 4 cut(s) 952, 1030, 1228, 1231
GsaI CCCAGC 1 cut(s) 546
HaeIII GGCC 3 cut(s) 32, 775, 1029
HapII CCGG 5 cut(s) 725, 879, 1026, 1070, 1190
HgaI GACGC 2 cut(s) 1002, 1019
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 2 cut(s) 117, 367
HinfI GANTC 3 cut(s) 667, 823, 1238
HpaII CCGG 5 cut(s) 725, 879, 1026, 1070, 1190
HphI GGTGA 4 cut(s) 146, 273, 1008, 1059
Hpy166II GTNNAC 3 cut(s) 576, 597, 1067
Hpy188I TCNGA 5 cut(s) 520, 612, 717, 1164, 1321
Hpy188III TCNNGA 8 cut(s) 146, 161, 784, 983, 994, 1220, 1325, 1343
Hpy8I GTNNAC 3 cut(s) 576, 597, 1067
HpyAV CCTTC 5 cut(s) 152, 723, 781, 876, 1414
HpyCH4III ACNGT 2 cut(s) 684, 1055
HpyF10VI GCNNNNNNNGC 3 cut(s) 863, 1094, 1469
HpyF3I CTNAG 4 cut(s) 17, 517, 714, 770
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 389, 546, 1075, 1321
LmnI GCTCC 2 cut(s) 959, 1423
Lsp1109I GCAGC 2 cut(s) 1214, 1242
LweI GCATC 2 cut(s) 519, 1459
MaeI CTAG 3 cut(s) 50, 564, 1474
MaeIII GTNAC 7 cut(s) 137, 269, 404, 527, 702, 1014, 1113
MalI GATC 4 cut(s) 391, 548, 1077, 1323
MbiI CCGCTC 1 cut(s) 954
MboI GATC 4 cut(s) 389, 546, 1075, 1321
MfeI CAATTG 1 cut(s) 645
MluCI AATT 8 cut(s) 295, 331, 373, 394, 439, 457, 645, 1354
MluI ACGCGT 1 cut(s) 1011
MmeI TCCRAC 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 1355
MseI TTAA 3 cut(s) 9, 471, 603
MslI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1083
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 5 cut(s) 725, 879, 1026, 1070, 1190
MspR9I CCNGG 5 cut(s) 29, 464, 726, 879, 1190
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 29, 464
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 3 cut(s) 863, 1094, 1469
NciI CCSGG 3 cut(s) 726, 879, 1190
NdeII GATC 4 cut(s) 389, 546, 1075, 1321
NlaIV GGNNCC 5 cut(s) 193, 218, 492, 1161, 1188
NmuCI GTSAC 5 cut(s) 269, 404, 702, 1014, 1113
NspI RCATGY 1 cut(s) 1216
NspV TTCGAA 1 cut(s) 938
PagI TCATGA 2 cut(s) 1324, 1342
PceI AGGCCT 1 cut(s) 775
PciI ACATGT 1 cut(s) 1212
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1355
PfeI GAWTC 3 cut(s) 667, 823, 1238
PflFI GACNNNGTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 877
PkrI GCNGC 4 cut(s) 953, 1031, 1229, 1232
PpuMI RGGWCCY 2 cut(s) 192, 1186
PscI ACATGT 1 cut(s) 1212
Psp5II RGGWCCY 2 cut(s) 192, 1186
Psp6I CCWGG 2 cut(s) 27, 462
PspEI GGTNACC 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 27, 462
PspN4I GGNNCC 5 cut(s) 193, 218, 492, 1161, 1188
PspPI GGNCC 3 cut(s) 192, 217, 1186
PspPPI RGGWCCY 2 cut(s) 192, 1186
PsrI GAACNNNNNNTAC 4 cut(s) 53, 85, 1048, 1080
PstI CTGCAG 2 cut(s) 1232, 1396
PsyI GACNNNGTC 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 5 cut(s) 436, 562, 962, 1093, 1408
RsaNI GTAC 5 cut(s) 435, 561, 961, 1092, 1407
RseI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1083
SaqAI TTAA 3 cut(s) 9, 471, 603
SatI GCNGC 4 cut(s) 952, 1030, 1228, 1231
Sau3AI GATC 4 cut(s) 389, 546, 1075, 1321
Sau96I GGNCC 3 cut(s) 192, 217, 1186
ScaI AGTACT 2 cut(s) 1093, 1408
ScrFI CCNGG 5 cut(s) 29, 464, 726, 879, 1190
SfaNI GCATC 2 cut(s) 519, 1459
SfcI CTRYAG 2 cut(s) 1228, 1392
SfuI TTCGAA 1 cut(s) 938
SinI GGWCC 3 cut(s) 192, 217, 1186
SmiMI CAYNNNNRTG 4 cut(s) 180, 429, 912, 1083
SmlI CTYRAG 1 cut(s) 1449
SmoI CTYRAG 1 cut(s) 1449
SpeI ACTAGT 2 cut(s) 49, 563
Sse9I AATT 8 cut(s) 295, 331, 373, 394, 439, 457, 645, 1354
SseBI AGGCCT 1 cut(s) 775
SsiI CCGC 2 cut(s) 952, 1030
SspI AATATT 1 cut(s) 935
SspMI CTAG 3 cut(s) 50, 564, 1474
StuI AGGCCT 1 cut(s) 775
StyD4I CCNGG 5 cut(s) 27, 462, 724, 877, 1188
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 684, 1055
TaqI TCGA 4 cut(s) 568, 938, 1203, 1359
TasI AATT 8 cut(s) 295, 331, 373, 394, 439, 457, 645, 1354
TatI WGTACW 2 cut(s) 1091, 1406
TauI GCSGC 2 cut(s) 954, 1032
TfiI GAWTC 3 cut(s) 667, 823, 1238
Tru1I TTAA 3 cut(s) 9, 471, 603
Tru9I TTAA 3 cut(s) 9, 471, 603
TscAI CASTG 4 cut(s) 749, 914, 1183, 1401
TseFI GTSAC 5 cut(s) 269, 404, 702, 1014, 1113
TseI GCWGC 2 cut(s) 1227, 1230
Tsp45I GTSAC 5 cut(s) 269, 404, 702, 1014, 1113
TspDTI ATGAA 8 cut(s) 92, 94, 107, 164, 513, 1305, 1331, 1473
TspGWI ACGGA 1 cut(s) 1283
TspRI CASTG 4 cut(s) 749, 914, 1183, 1401
Tth111I GACNNNGTC 1 cut(s) 342
VpaK11BI GGWCC 3 cut(s) 192, 217, 1186
XapI RAATTY 5 cut(s) 295, 373, 394, 457, 1354
XceI RCATGY 1 cut(s) 1216
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 1355
XspI CTAG 3 cut(s) 50, 564, 1474
ZrmI AGTACT 2 cut(s) 1093, 1408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.