Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015321

Physical Location & Seq

Genomic Coordinates Reverse (-)

10139195 .. 10139890

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG136200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAGAAGGACACGTGGAGTGAGGAGGAAGACAAGATACTGATTCAAGCTCATGCAGAGATAGGAAACAAGTGGGCAGAGATTGCAAAGAGACTTCCCGGAAGGACTGAAAACTCCATCAAAAACCACTGGAATGCAACCAAAAGGAGACAATATTCGAAGCGAAAATGCCGCTCCAAGTACCCCAGAGGCTCTCTTCTTCAGGATTACATCAAGAGTTTGAACTTGGACGCGTCGCCAAACACCGGCCGCCAGAGAAAAAATAACAACAACAACAACAACAGCAGCAATAGTTCACCGGCCGATCACAACAATGCCAGTACTGCCAGCACCAAAGTTCAGTCACAAATCAATGTGGGGTTCAATAGTGAGAGTGATAGCAGGTTGGTTCCGAACTATGAGTTCAGTGAGGAGGACCCGGATTTTTGTTTCGATGAGAACATGTTTCAAGAGGGCTGCAGCATTGATTCTCTGCTTGATGACATTCCTTGTGCTACGGATTTCGGCAAGAATGGTAATGATTTTGATGGGAAAATGATGGGTTCATCAGATCATCAGCCTGTTGCTGTTGATGATGAGAAGAATTTCGAGGTGTTGGATATGCAAGTGGATTTGGGTTCTGCAGTGATGGAGAGTACTGAAGTGAAGAAGGAGCTGGACTTGGTGGAGATGATGTCTCAAGTGTCAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.06

Weight (kDa)

4.83

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 45	3.9e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 57	1e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18770
fragaria_vesca	FvH4_5g05420
malus_domestica	MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica	Prupe.5G172400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193411
rosa_laevigata	RLG00000004270
rosa_multiflora	Rmu_ssc0000092.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262120
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana	Rw7G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	174
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	172, 250
AcoI	YGGCCR	2 cut(s)	247, 300
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	185, 660
AcvI	CACGTG	1 cut(s)	15
AfaI	GTAC	3 cut(s)	182, 322, 637
AfiI	CCNNNNNNNGG	1 cut(s)	245
AflIII	ACRYGT	3 cut(s)	12, 231, 441
AgsI	TTSAA	4 cut(s)	47, 223, 364, 449
AluBI	AGCT	2 cut(s)	50, 655
AluI	AGCT	2 cut(s)	50, 655
Alw26I	GTCTC	3 cut(s)	85, 142, 681
AoxI	GGCC	2 cut(s)	247, 300
ApeKI	GCWGC	3 cut(s)	285, 456, 459
ApoI	RAATTY	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	2 cut(s)	99, 419
AsuHPI	GGTGA	1 cut(s)	288
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
BbrPI	CACGTG	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	297, 443, 471
BccI	CCATC	4 cut(s)	125, 521, 532, 622
BcnI	CCSGG	2 cut(s)	99, 419
BcoDI	GTCTC	3 cut(s)	85, 142, 681
BfmI	CTRYAG	2 cut(s)	457, 621
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	5 cut(s)	172, 250, 286, 457, 460
BlsI	GCNGC	5 cut(s)	173, 251, 287, 458, 461
BmcAI	AGTACT	2 cut(s)	322, 637
Bme1390I	CCNGG	2 cut(s)	99, 419
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	390, 417
BmrFI	CCNGG	2 cut(s)	99, 419
BpiI	GAAGAC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	663
BpuMI	CCSGG	2 cut(s)	99, 419
BsaAI	YACGTR	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	2 cut(s)	245, 298
Bse1I	ACTGG	2 cut(s)	134, 318
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	2 cut(s)	134, 318
BseRI	GAGGAG	2 cut(s)	38, 425
BseX3I	CGGCCG	2 cut(s)	247, 300
BseXI	GCAGC	3 cut(s)	297, 443, 471
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	2 cut(s)	250, 303
BshFI	GGCC	2 cut(s)	249, 302
BsiEI	CGRYCG	2 cut(s)	250, 303
BsiSI	CCGG	4 cut(s)	99, 246, 299, 419
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	85, 142, 681
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	249, 302
Bsp119I	TTCGAA	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	304, 550
BspACI	CCGC	2 cut(s)	172, 250
BspANI	GGCC	2 cut(s)	249, 302
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	390, 417
BspMAI	CTGCAG	2 cut(s)	461, 625
BspMI	ACCTGC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	245, 298
BsrI	ACTGG	2 cut(s)	134, 318
BssAI	RCCGGY	2 cut(s)	245, 298
BssMI	GATC	2 cut(s)	304, 550
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	307, 553
BstMAI	GTCTC	3 cut(s)	85, 142, 681
BstMBI	GATC	2 cut(s)	304, 550
BstMCI	CGRYCG	2 cut(s)	250, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 323
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	97, 417
BstSFI	CTRYAG	2 cut(s)	457, 621
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	297, 443, 471
BstV2I	GAAGAC	1 cut(s)	36
BstZI	CGGCCG	2 cut(s)	247, 300
BsuRI	GGCC	2 cut(s)	249, 302
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	127, 412, 630
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	245, 298
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	2 cut(s)	222, 239
Csp6I	GTAC	3 cut(s)	181, 321, 636
CviAII	CATG	2 cut(s)	53, 442
CviJI	RGCY	7 cut(s)	50, 192, 249, 302, 456, 559, 655
CviKI_1	RGCY	7 cut(s)	50, 192, 249, 302, 456, 559, 655
CviQI	GTAC	3 cut(s)	181, 321, 636
DpnI	GATC	2 cut(s)	306, 552
DpnII	GATC	2 cut(s)	304, 550
EaeI	YGGCCR	2 cut(s)	247, 300
EagI	CGGCCG	2 cut(s)	247, 300
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EclXI	CGGCCG	2 cut(s)	247, 300
Eco47I	GGWCC	1 cut(s)	415
Eco52I	CGGCCG	2 cut(s)	247, 300
Eco57I	CTGAAG	2 cut(s)	185, 660
Eco72I	CACGTG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	415
FaeI	CATG	2 cut(s)	56, 445
FaiI	YATR	4 cut(s)	54, 399, 443, 602
FatI	CATG	2 cut(s)	52, 441
Fnu4HI	GCNGC	5 cut(s)	172, 250, 286, 457, 460
Fsp4HI	GCNGC	5 cut(s)	172, 250, 286, 457, 460
GluI	GCNGC	5 cut(s)	172, 250, 286, 457, 460
HaeIII	GGCC	2 cut(s)	249, 302
HapII	CCGG	4 cut(s)	99, 246, 299, 419
HgaI	GACGC	2 cut(s)	222, 239
Hin1II	CATG	2 cut(s)	56, 445
HinfI	GANTC	2 cut(s)	43, 467
HpaII	CCGG	4 cut(s)	99, 246, 299, 419
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	393, 550
Hpy188III	TCNNGA	3 cut(s)	203, 214, 449
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	96, 643
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	7 cut(s)	4, 56, 86, 137, 459, 604, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 323
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	56, 445
Kzo9I	GATC	2 cut(s)	304, 550
LmnI	GCTCC	2 cut(s)	179, 652
Lsp1109I	GCAGC	3 cut(s)	297, 443, 471
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	306, 552
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	2 cut(s)	304, 550
MboII	GAAGA	5 cut(s)	41, 188, 191, 592, 658
MluCI	AATT	1 cut(s)	583
MluI	ACGCGT	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	7 cut(s)	16, 19, 182, 403, 406, 445, 583
MroXI	GAANNNNTTC	1 cut(s)	584
MslI	CAYNNNNRTG	2 cut(s)	132, 312
MspI	CCGG	4 cut(s)	99, 246, 299, 419
MspR9I	CCNGG	2 cut(s)	99, 419
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	83, 323
NciI	CCSGG	2 cut(s)	99, 419
NdeII	GATC	2 cut(s)	304, 550
NlaIII	CATG	2 cut(s)	56, 445
NlaIV	GGNNCC	2 cut(s)	390, 417
NmuCI	GTSAC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	445
NspV	TTCGAA	1 cut(s)	158
PciI	ACATGT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	43, 467
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	173, 251, 287, 458, 461
PmaCI	CACGTG	1 cut(s)	15
PmlI	CACGTG	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	415
PscI	ACATGT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	390, 417
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PstI	CTGCAG	2 cut(s)	461, 625
RsaI	GTAC	3 cut(s)	182, 322, 637
RsaNI	GTAC	3 cut(s)	181, 321, 636
RseI	CAYNNNNRTG	2 cut(s)	132, 312
SatI	GCNGC	5 cut(s)	172, 250, 286, 457, 460
Sau3AI	GATC	2 cut(s)	304, 550
Sau96I	GGNCC	1 cut(s)	415
ScaI	AGTACT	2 cut(s)	322, 637
ScrFI	CCNGG	2 cut(s)	99, 419
SetI	ASST	5 cut(s)	17, 52, 386, 594, 657
SfcI	CTRYAG	2 cut(s)	457, 621
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	132, 312
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	2 cut(s)	172, 250
SspI	AATATT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	97, 417
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	158, 432, 588
TasI	AATT	1 cut(s)	583
TatI	WGTACW	2 cut(s)	320, 635
TauI	GCSGC	2 cut(s)	174, 252
TfiI	GAWTC	2 cut(s)	43, 467
TscAI	CASTG	3 cut(s)	134, 412, 630
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	3 cut(s)	285, 456, 459
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	3 cut(s)	134, 412, 630
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	584
ZrmI	AGTACT	2 cut(s)	322, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.