MD06G1172900.v1.1
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
31290745 .. 31292760
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1172900.v1.1.491

Sequence Viewer

Length: 1458 bp
ATGGAGCTCAACAAGCTCAGAAAAAAACTCGTCTCCCAAATCCACATTCCATTGTTTGCGTCGGAAAACTATGTCAAACCTTATGCTATGAAAGACGAGTTTCTCTTTGAAACATCTTCGTCTTCAAAGAGAAACTACAATTACCTCCAAGATTTTCACCACCTTGATCATCAATTTCATGTCAATGTCTCCTCTTCAAACCCTATGTTTGGGACCCACACCCCATGTTTTGATCCGTACAGCGACACATCCTACCCCTACGATCAAAATTCATCACATCAAGATGTGAACTTTTACAAATGTAAGCCTCCAAATGTTGCAGAAAACAATGGGGGACATGGCCAAGTTTTGGACAACTTCCAAGGTGGGTCCTACTTGAATTTCCCAACTCATCACAGATCATCAAATCCGTTTGATCATGCGGTGGGAACTTCATCTCATGGGAGTGCAACTAATTTCCTGCCGTTGGATTGCACTCAAGATATTAAACCCATGAATTTTTCGGTGCCGGATGAGGTATCCTGCATAAACAATGCAGACCAAAATGGATACTACAGAAAATTTGGGATGAATGGCAAAAGCAAAGTTACCGGAGTAACAAGGGGGTCAATGGTGAAAGGTCGAAAGAAGTCAAATGTGGTCAAGGGTCAATGGACAACCGAGGAAGATAGGCTCTTAATTCAGCTTGTTGAGCAATTTGGAGTCAGGAAATGGTCTCACATTGCTCAGATGTTGCCTGGGAGAATTGGGAAGCAATGTAGGGAGAGATGGCATAACCACCTAAGGCCTGACATCAAGAAGGATACATGGAGTGAGGAGGAGGACAAGACACTGATACAAGCTCATGCAGAAATAGGAAACAAGTGGGCAGAAATTGCAAAGAGACTGCCCGGAAGGACTGAAAACTCCATCAAAAACCACTGGAACGCAACGAAAAGGCGACAATATTCCAAGCGAAAATGTCGATCAAAGTACCCTAGAGGCTCCATTTTGCAGGAATACATCAAGAGCTTAAACCTAGACTCGGCAAGCAACAGCACAGGGAGGCAGCGAAGGAACAGTTCAGCTAACAACAACAACGGTGGCAGCACCAGCACTAAAGCAGCTGCAGCTGCAGCTACTTATCAGCAGCCACAAACCAACGTGGGACTTTTGTGCGCAAACGATCTGTTGGTTCCGAGCTACAACGATTTCAATGAGGACCCCGATTTTTGTTTCGACGAGAACATCTTCGAGGAAGGGTGTAGCATCGATTCTTTGCTCGATGACATCCCTTGCGCTGCTGCTGTTGGTGAGAAGAACAGTAACTTTGATGGTTACAATGAGATTGATTATGGTTATGTTGATAAGGGTAATTTTGATGAGAAGGATTTTCAGATGGCCATGCAAGTGGATTTGGAGAGTAATGAAGTGAAGAAGGAGATGGATTTGGTGGAGATGATTTCTCAAGTGAACTAA

Protein Analysis

486

Amino Acids

55.1

Weight (kDa)

6.5

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 215 - 261 5.4e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 218 - 278 2.1e-21 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 267 - 309 1.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 270 - 321 4.1e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18770
fragaria_vesca FvH4_5g05420
malus_domestica MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica Prupe.5G172400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193411
rosa_laevigata RLG00000004270
rosa_multiflora Rmu_ssc0000092.1_g000001
rosa_roxburghii Rroxscaffold_3G00262120
rosa_rugosa Rorug07G0009300
rosa_samantha Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana Rw7G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1159
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 349
AciI CCGC 1 cut(s) 422
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 2 cut(s) 340, 1380
AcsI RAATTY 4 cut(s) 268, 379, 496, 560
AfaI GTAC 2 cut(s) 239, 974
AfiI CCNNNNNNNGG 4 cut(s) 209, 349, 466, 1024
AgsI TTSAA 5 cut(s) 110, 126, 198, 379, 1195
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 4 cut(s) 37, 193, 720, 877
AlwI GGATC 1 cut(s) 227
AoxI GGCC 3 cut(s) 340, 785, 1380
ApoI RAATTY 4 cut(s) 268, 379, 496, 560
Asp700I GAANNNNTTC 1 cut(s) 1229
AspLEI GCGC 2 cut(s) 1160, 1280
AspS9I GGNCC 3 cut(s) 213, 369, 1201
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 3 cut(s) 149, 625, 1304
AvaII GGWCC 3 cut(s) 213, 369, 1201
AxyI CCTNAGG 1 cut(s) 782
BalI TGGCCA 2 cut(s) 342, 1382
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 5 cut(s) 762, 917, 1307, 1372, 1417
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 738
BciVI GTATCC 3 cut(s) 529, 542, 796
BclI TGATCA 2 cut(s) 166, 415
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 4 cut(s) 37, 193, 720, 877
BfaI CTAG 2 cut(s) 978, 1019
BfmI CTRYAG 3 cut(s) 553, 1107, 1113
BfuI GTATCC 3 cut(s) 529, 542, 796
Bme1390I CCNGG 2 cut(s) 738, 891
Bme18I GGWCC 3 cut(s) 213, 369, 1201
BmgT120I GGNCC 3 cut(s) 213, 369, 1201
BmiI GGNNCC 7 cut(s) 214, 215, 370, 507, 985, 1176, 1203
BmrFI CCNGG 2 cut(s) 738, 891
BmsI GCATC 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 462, 1431
BpuMI CCSGG 1 cut(s) 891
Bsa29I ATCGAT 1 cut(s) 1251
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 3 cut(s) 361, 660, 737
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 349, 466, 1024
Bse1I ACTGG 1 cut(s) 926
Bse21I CCTNAGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 720, 761
BseBI CCWGG 1 cut(s) 738
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 361, 660, 737
BseGI GGATG 4 cut(s) 248, 517, 573, 1269
BseLI CCNNNNNNNGG 4 cut(s) 209, 349, 466, 1024
BseMI GCAATG 2 cut(s) 720, 761
BseMII CTCAG 2 cut(s) 31, 740
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 3 cut(s) 181, 830, 833
BshFI GGCC 3 cut(s) 342, 787, 1382
BshNI GGYRCC 1 cut(s) 505
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 3 cut(s) 509, 591, 891
BslFI GGGAC 3 cut(s) 226, 348, 1161
BslI CCNNNNNNNGG 4 cut(s) 209, 349, 466, 1024
BsmAI GTCTC 4 cut(s) 37, 193, 720, 877
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 3 cut(s) 226, 348, 1161
BsnI GGCC 3 cut(s) 342, 787, 1382
Bso31I GGTCTC 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
BspACI CCGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 342, 787, 1382
BspCNI CTCAG 2 cut(s) 30, 739
BspDI ATCGAT 1 cut(s) 1251
BspLI GGNNCC 7 cut(s) 214, 215, 370, 507, 985, 1176, 1203
BspMAI CTGCAG 2 cut(s) 1111, 1117
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 720
BsrDI GCAATG 2 cut(s) 720, 761
BsrI ACTGG 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 361, 660, 737
BssMI GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 1061, 1082, 1304
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 1030
BstDEI CTNAG 3 cut(s) 17, 726, 782
BstF5I GGATG 4 cut(s) 248, 517, 573, 1269
BstHHI GCGC 2 cut(s) 1160, 1280
BstKTI GATC 7 cut(s) 169, 235, 265, 401, 418, 968, 1168
BstMAI GTCTC 4 cut(s) 37, 193, 720, 877
BstMBI GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
BstMWI GCNNNNNNNGC 7 cut(s) 13, 691, 875, 1092, 1109, 1112, 1115
BstNI CCWGG 1 cut(s) 738
BstSCI CCNGG 2 cut(s) 736, 889
BstSFI CTRYAG 3 cut(s) 553, 1107, 1113
BstV2I GAAGAC 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 1390
Bsu15I ATCGAT 1 cut(s) 1251
Bsu36I CCTNAGG 1 cut(s) 782
BsuI GTATCC 3 cut(s) 529, 542, 796
BsuRI GGCC 3 cut(s) 342, 787, 1382
BsuTUI ATCGAT 1 cut(s) 1251
BtsCI GGATG 4 cut(s) 248, 517, 573, 1269
BtsIMutI CAGTG 2 cut(s) 830, 919
Cac8I GCNNGC 1 cut(s) 1030
CfoI GCGC 2 cut(s) 1160, 1280
Cfr13I GGNCC 3 cut(s) 213, 369, 1201
ClaI ATCGAT 1 cut(s) 1251
CseI GACGC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 238, 973
CspCI CAANNNNNGTGG 2 cut(s) 1063, 1098
CviAII CATG 9 cut(s) 179, 225, 338, 419, 440, 493, 807, 845, 1384
CviQI GTAC 2 cut(s) 238, 973
DdeI CTNAG 3 cut(s) 17, 726, 782
DpnI GATC 7 cut(s) 168, 234, 264, 400, 417, 967, 1167
DpnII GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
EaeI YGGCCR 2 cut(s) 340, 1380
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 720
Eco47I GGWCC 3 cut(s) 213, 369, 1201
Eco53kI GAGCTC 1 cut(s) 7
Eco81I CCTNAGG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 3 cut(s) 213, 369, 1201
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 9 cut(s) 182, 228, 341, 422, 443, 496, 810, 848, 1387
FaqI GGGAC 3 cut(s) 226, 348, 1161
FatI CATG 9 cut(s) 178, 224, 337, 418, 439, 492, 806, 844, 1383
FbaI TGATCA 2 cut(s) 166, 415
FokI GGATG 4 cut(s) 235, 524, 580, 1256
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 2 cut(s) 978, 1019
FspI TGCGCA 1 cut(s) 1159
GlaI GCGC 2 cut(s) 1159, 1279
HaeIII GGCC 3 cut(s) 342, 787, 1382
HapII CCGG 3 cut(s) 509, 591, 891
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 1160, 1280
Hin1II CATG 9 cut(s) 182, 228, 341, 422, 443, 496, 810, 848, 1387
Hin6I GCGC 2 cut(s) 1158, 1278
HinP1I GCGC 2 cut(s) 1158, 1278
HinfI GANTC 3 cut(s) 702, 1022, 1253
HpaII CCGG 3 cut(s) 509, 591, 891
HphI GGTGA 3 cut(s) 149, 625, 1304
Hpy166II GTNNAC 2 cut(s) 289, 1453
Hpy188I TCNGA 5 cut(s) 20, 64, 729, 1179, 1377
Hpy188III TCNNGA 5 cut(s) 281, 479, 706, 796, 1006
Hpy8I GTNNAC 2 cut(s) 289, 1453
Hpy99I CGWCG 2 cut(s) 64, 1223
HpyAV CCTTC 6 cut(s) 793, 888, 1047, 1232, 1360, 1411
HpyCH4III ACNGT 3 cut(s) 1061, 1082, 1304
HpyCH4IV ACGT 1 cut(s) 1143
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 691, 875, 1092, 1109, 1112, 1115
HpyF3I CTNAG 3 cut(s) 17, 726, 782
HpySE526I ACGT 1 cut(s) 1143
Hsp92II CATG 9 cut(s) 182, 228, 341, 422, 443, 496, 810, 848, 1387
HspAI GCGC 2 cut(s) 1158, 1278
KflI GGGWCCC 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 166, 415
Kzo9I GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
LmnI GCTCC 2 cut(s) 4, 989
LweI GCATC 1 cut(s) 1257
MaeI CTAG 2 cut(s) 978, 1019
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 4 cut(s) 586, 595, 1304, 1316
MalI GATC 7 cut(s) 168, 234, 264, 400, 417, 967, 1167
MboI GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
MboII GAAGA 7 cut(s) 108, 114, 186, 677, 1222, 1309, 1426
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 2 cut(s) 342, 1382
MluNI TGGCCA 2 cut(s) 342, 1382
MlyI GAGTC 2 cut(s) 711, 1016
MmeI TCCRAC 2 cut(s) 42, 447
Mox20I TGGCCA 2 cut(s) 342, 1382
MroXI GAANNNNTTC 1 cut(s) 1229
MscI TGGCCA 2 cut(s) 342, 1382
MseI TTAA 3 cut(s) 486, 677, 1013
MslI CAYNNNNRTG 4 cut(s) 183, 282, 444, 1388
Msp20I TGGCCA 2 cut(s) 342, 1382
MspA1I CMGCKG 2 cut(s) 1106, 1112
MspI CCGG 3 cut(s) 509, 591, 891
MspR9I CCNGG 2 cut(s) 738, 891
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 7 cut(s) 13, 691, 875, 1092, 1109, 1112, 1115
NciI CCSGG 1 cut(s) 891
NdeII GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
NlaIII CATG 9 cut(s) 182, 228, 341, 422, 443, 496, 810, 848, 1387
NlaIV GGNNCC 7 cut(s) 214, 215, 370, 507, 985, 1176, 1203
NmeAIII GCCGAG 1 cut(s) 1004
NsbI TGCGCA 1 cut(s) 1159
PceI AGGCCT 1 cut(s) 787
PdmI GAANNNNTTC 1 cut(s) 1229
PfeI GAWTC 1 cut(s) 1253
PflMI CCANNNNNTGG 1 cut(s) 349
PleI GAGTC 2 cut(s) 710, 1016
PpsI GAGTC 2 cut(s) 710, 1016
PpuMI RGGWCCY 3 cut(s) 213, 369, 1201
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 3 cut(s) 213, 369, 1201
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 7 cut(s) 214, 215, 370, 507, 985, 1176, 1203
PspPI GGNCC 3 cut(s) 213, 369, 1201
PspPPI RGGWCCY 3 cut(s) 213, 369, 1201
PstI CTGCAG 2 cut(s) 1111, 1117
PvuII CAGCTG 2 cut(s) 1106, 1112
RsaI GTAC 2 cut(s) 239, 974
RsaNI GTAC 2 cut(s) 238, 973
RseI CAYNNNNRTG 4 cut(s) 183, 282, 444, 1388
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 486, 677, 1013
Sau3AI GATC 7 cut(s) 166, 232, 262, 398, 415, 965, 1165
Sau96I GGNCC 3 cut(s) 213, 369, 1201
SchI GAGTC 2 cut(s) 711, 1016
ScrFI CCNGG 2 cut(s) 738, 891
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 1257
SfcI CTRYAG 3 cut(s) 553, 1107, 1113
SinI GGWCC 3 cut(s) 213, 369, 1201
SmiMI CAYNNNNRTG 4 cut(s) 183, 282, 444, 1388
SmlI CTYRAG 2 cut(s) 477, 1446
SmoI CTYRAG 2 cut(s) 477, 1446
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 1 cut(s) 422
SspI AATATT 1 cut(s) 947
SspMI CTAG 2 cut(s) 978, 1019
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 736, 889
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 1061, 1082, 1304
TaiI ACGT 1 cut(s) 1146
TaqI TCGA 6 cut(s) 622, 964, 1218, 1233, 1251, 1263
TfiI GAWTC 1 cut(s) 1253
Tru1I TTAA 3 cut(s) 486, 677, 1013
Tru9I TTAA 3 cut(s) 486, 677, 1013
TscAI CASTG 2 cut(s) 837, 926
TspDTI ATGAA 7 cut(s) 104, 167, 261, 423, 509, 584, 1422
TspGWI ACGGA 2 cut(s) 225, 399
TspRI CASTG 2 cut(s) 837, 926
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 213, 369, 1201
XapI RAATTY 4 cut(s) 268, 379, 496, 560
XmnI GAANNNNTTC 1 cut(s) 1229
XspI CTAG 2 cut(s) 978, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.