MD14G1179000.v1.1
MYB Family

Transcription factor MYB98-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
27168363 .. 27170253
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1179000.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGGAGCTCAACAAGCTCAGGGAAAACCTCGTCTCTCAAATTCACGTTCCGTTGCTCGCGCCGGAGAATTATGTCAAACCTTACACAACGAAAGATGAGTTTCTCTTTGAAGCGTCTTCGTCTTCAAAGGGAAACTACAATTACCTCCAAGATTTTCACCACCTTGATCATCAATTTCAGGTCAACGTCTCCTCTTCAAACCCTATGTTTGGGACCCACACCCCATGTTTTGATCCGTACAACGACACATCCTACCCGTACGATCAAAATTCATCTCATCAAGATGTGAACTTTTACGAATGTAAGCCTCTAAATGTTGCAGAAAACAATGGGGCCCATGGCCAAGTTTTGGACAATTTACAAGGTGGGTCCTACTTGAAATTCTCAACTCATCACAGATTATCAAATCCATTAGATCATGTGGTGGGAACTTCATCTCATATGACTGCAACTAATTTCCTGCCGTTGGATTGCTCTCAAGATATTAAACCCGTGAACTTTTTGGTGCCGGATGAGGTCTCCTGCATAAACAATGCAGACCAAAATGTGTACTACAGAAAATTTGGGATGAATGGTAAAAGCAGAGTTACCGGAGTAACAAGAGGGTCAACGGTGAAAGGTCGAAAGAAGTCAAATGTGGTCAAGGGTCAATGGACAATTGAGGAAGATAGGCTCTTAATTCAACTGGTTGAGCAATTTGGAGTGAGGAAATGGTCTCACATTGCTCAGATGTTGCCTGGGAGAATTGGGAAGCAATGTAGGGAGAGATGGCATAACCACCTAAGGCCTGACATCAAGAAGGACACATGGAGTGAGGGGGAGGACAAGATACTGATACAAGCTCATGCAGAAATAGGAAACAAGTGGGCAGAAATTGCAAAGAGACTGCCCGGAAGGACCGAAAACTCCATCAAAAACCACTGGAACGCAACGAAAAGGCGACAATATTCCAAGCGAAAATGTCGATCAAAGTACCCTAGAGGCTCCGTTCTGCAGGAATACATCAAGAGCTTAAACCTAGACTCGGCAAGCAACGGCACAGGGCGGCAGCGAAAGAACAGTTCAGCTAACAACAACGGTGTCAGCACCAGCACCAAAGCAGCTGCAGCTGCTCATCAGCCACAAACCAACCTGGAGTTTTCGTCCGCAAATGATCAGTTCGTTCCGAGCTACAACGATTTCAATGAGGACCCCAATTTTTGTTTTGACGAGAACATCTTCGAGGAAGGGTGTAGCATCGACTCTCTGCTCGATGACATCCCTTGCGCTCCTGATGTTGGTGAGAAGAACAGTAACTTTGATGGTAAAAATCAGATTGATTACGGTAATGTTGACAAGGGTAATTTTGATGAGAAGGGTTTTGATGTGGAGATGCAAGTGGATTGGGAGAGTAATGAAGTGAAGAAGGAGATGGATTTGGTGGAGATGATATCTCAAGTGAACTAA

Protein Analysis

482

Amino Acids

54.69

Weight (kDa)

6.11

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 215 - 261 2.5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 218 - 275 8.3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 267 - 309 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 270 - 321 1.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015321)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18770
fragaria_vesca FvH4_5g05420
malus_domestica MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica Prupe.5G172400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0193411
rosa_laevigata RLG00000004270
rosa_multiflora Rmu_ssc0000092.1_g000001
rosa_roxburghii Rroxscaffold_3G00262120
rosa_rugosa Rorug07G0009300
rosa_samantha Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana Rw7G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 349
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 1045, 1146
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 4 cut(s) 39, 268, 380, 560
AfaI GTAC 4 cut(s) 239, 260, 551, 974
AfiI CCNNNNNNNGG 5 cut(s) 209, 349, 466, 1024, 1277
AgsI TTSAA 6 cut(s) 110, 126, 198, 379, 683, 1183
AjnI CCWGG 2 cut(s) 736, 1131
AluBI AGCT 8 cut(s) 7, 16, 842, 1011, 1067, 1103, 1109, 1170
AluI AGCT 8 cut(s) 7, 16, 842, 1011, 1067, 1103, 1109, 1170
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 5 cut(s) 37, 193, 523, 720, 877
AlwI GGATC 1 cut(s) 227
AoxI GGCC 3 cut(s) 333, 340, 785
ApaI GGGCCC 1 cut(s) 337
ApeKI GCWGC 5 cut(s) 1048, 1100, 1103, 1106, 1109
ApoI RAATTY 4 cut(s) 39, 268, 380, 560
Asp700I GAANNNNTTC 1 cut(s) 1217
AspLEI GCGC 2 cut(s) 61, 1268
AspS9I GGNCC 6 cut(s) 213, 333, 334, 369, 897, 1189
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 3 cut(s) 149, 625, 1292
AvaII GGWCC 4 cut(s) 213, 369, 897, 1189
AxyI CCTNAGG 1 cut(s) 782
BaeGI GKGCMC 1 cut(s) 337
BalI TGGCCA 1 cut(s) 342
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 2 cut(s) 9, 337
BbsI GAAGAC 2 cut(s) 108, 114
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 5 cut(s) 1060, 1090, 1096, 1112, 1118
BccI CCATC 4 cut(s) 762, 917, 1295, 1405
BceAI ACGGC 2 cut(s) 448, 1051
BciT130I CCWGG 2 cut(s) 738, 1133
BclI TGATCA 2 cut(s) 166, 1153
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 5 cut(s) 37, 193, 523, 720, 877
BfaI CTAG 2 cut(s) 978, 1019
BfmI CTRYAG 3 cut(s) 553, 992, 1104
BisI GCNGC 6 cut(s) 1046, 1049, 1101, 1104, 1107, 1110
BlsI GCNGC 6 cut(s) 1047, 1050, 1102, 1105, 1108, 1111
Bme1390I CCNGG 3 cut(s) 738, 891, 1133
Bme18I GGWCC 4 cut(s) 213, 369, 897, 1189
BmgT120I GGNCC 6 cut(s) 213, 333, 334, 369, 897, 1189
BmiI GGNNCC 8 cut(s) 214, 215, 334, 335, 370, 507, 985, 1191
BmrFI CCNGG 3 cut(s) 738, 891, 1133
BmsI GCATC 2 cut(s) 1245, 1362
BpiI GAAGAC 2 cut(s) 108, 114
BpmI CTGGAG 1 cut(s) 1154
Bpu10I CCTNAGC 1 cut(s) 17
BpuEI CTTGAG 2 cut(s) 462, 1419
BpuMI CCSGG 1 cut(s) 891
BsaI GGTCTC 2 cut(s) 523, 720
BsaJI CCNNGG 2 cut(s) 337, 737
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 349, 466, 1024, 1277
Bse1I ACTGG 2 cut(s) 690, 926
Bse21I CCTNAGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 720, 761
BseBI CCWGG 2 cut(s) 738, 1133
BseDI CCNNGG 2 cut(s) 337, 737
BseGI GGATG 4 cut(s) 248, 517, 573, 1257
BseLI CCNNNNNNNGG 5 cut(s) 209, 349, 466, 1024, 1277
BseMI GCAATG 2 cut(s) 720, 761
BseMII CTCAG 2 cut(s) 31, 740
BseNI ACTGG 2 cut(s) 690, 926
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 5 cut(s) 1060, 1090, 1096, 1112, 1118
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 3 cut(s) 335, 342, 787
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 4 cut(s) 62, 509, 591, 891
BsiWI CGTACG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 5 cut(s) 209, 349, 466, 1024, 1277
BsmAI GTCTC 5 cut(s) 37, 193, 523, 720, 877
BsmBI CGTCTC 2 cut(s) 37, 193
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 3 cut(s) 335, 342, 787
Bso31I GGTCTC 2 cut(s) 523, 720
Bsp120I GGGCCC 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 9, 337
Bsp143I GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 2 cut(s) 1045, 1146
BspANI GGCC 3 cut(s) 335, 342, 787
BspCNI CTCAG 2 cut(s) 30, 739
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 8 cut(s) 214, 215, 334, 335, 370, 507, 985, 1191
BspMAI CTGCAG 2 cut(s) 996, 1108
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 2 cut(s) 523, 720
BsrDI GCAATG 2 cut(s) 720, 761
BsrI ACTGG 2 cut(s) 690, 926
BssECI CCNNGG 2 cut(s) 337, 737
BssMI GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 2 cut(s) 738, 1133
Bst4CI ACNGT 5 cut(s) 613, 1061, 1079, 1292, 1325
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 2 cut(s) 57, 1030
BstDEI CTNAG 3 cut(s) 17, 726, 782
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 4 cut(s) 248, 517, 573, 1257
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 2 cut(s) 61, 1268
BstKTI GATC 6 cut(s) 169, 235, 265, 418, 968, 1156
BstMAI GTCTC 5 cut(s) 37, 193, 523, 720, 877
BstMBI GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
BstMWI GCNNNNNNNGC 4 cut(s) 13, 875, 1106, 1109
BstNI CCWGG 2 cut(s) 738, 1133
BstSCI CCNGG 3 cut(s) 736, 889, 1131
BstSFI CTRYAG 3 cut(s) 553, 992, 1104
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 5 cut(s) 1060, 1090, 1096, 1112, 1118
BstV2I GAAGAC 2 cut(s) 108, 114
Bsu36I CCTNAGG 1 cut(s) 782
BsuRI GGCC 3 cut(s) 335, 342, 787
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 4 cut(s) 248, 517, 573, 1257
BtsIMutI CAGTG 1 cut(s) 919
Cac8I GCNNGC 2 cut(s) 57, 1030
CfoI GCGC 2 cut(s) 61, 1268
Cfr13I GGNCC 6 cut(s) 213, 333, 334, 369, 897, 1189
CseI GACGC 1 cut(s) 102
Csp6I GTAC 4 cut(s) 238, 259, 550, 973
CviAII CATG 5 cut(s) 225, 338, 419, 807, 845
CviQI GTAC 4 cut(s) 238, 259, 550, 973
DdeI CTNAG 3 cut(s) 17, 726, 782
DpnI GATC 6 cut(s) 168, 234, 264, 417, 967, 1155
DpnII GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 337
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 9, 337
Eco31I GGTCTC 2 cut(s) 523, 720
Eco32I GATATC 1 cut(s) 1431
Eco47I GGWCC 4 cut(s) 213, 369, 897, 1189
Eco53kI GAGCTC 1 cut(s) 7
Eco81I CCTNAGG 1 cut(s) 782
EcoICRI GAGCTC 1 cut(s) 7
EcoO109I RGGNCCY 4 cut(s) 213, 333, 369, 1189
EcoRII CCWGG 2 cut(s) 736, 1131
EcoRV GATATC 1 cut(s) 1431
EcoT14I CCWWGG 1 cut(s) 337
EcoT38I GRGCYC 2 cut(s) 9, 337
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 2 cut(s) 37, 193
FaeI CATG 5 cut(s) 228, 341, 422, 810, 848
FaqI GGGAC 1 cut(s) 226
FatI CATG 5 cut(s) 224, 337, 418, 806, 844
FauNDI CATATG 1 cut(s) 441
FbaI TGATCA 2 cut(s) 166, 1153
Fnu4HI GCNGC 6 cut(s) 1046, 1049, 1101, 1104, 1107, 1110
FokI GGATG 4 cut(s) 235, 524, 580, 1244
FriOI GRGCYC 2 cut(s) 9, 337
Fsp4HI GCNGC 6 cut(s) 1046, 1049, 1101, 1104, 1107, 1110
FspBI CTAG 2 cut(s) 978, 1019
GlaI GCGC 2 cut(s) 60, 1267
GluI GCNGC 6 cut(s) 1046, 1049, 1101, 1104, 1107, 1110
GsuI CTGGAG 1 cut(s) 1154
HaeIII GGCC 3 cut(s) 335, 342, 787
HapII CCGG 4 cut(s) 62, 509, 591, 891
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 61, 1268
Hin1II CATG 5 cut(s) 228, 341, 422, 810, 848
Hin6I GCGC 2 cut(s) 59, 1266
HinP1I GCGC 2 cut(s) 59, 1266
HincII GTYRAC 3 cut(s) 184, 609, 1333
HindII GTYRAC 3 cut(s) 184, 609, 1333
HinfI GANTC 2 cut(s) 1022, 1241
HpaII CCGG 4 cut(s) 62, 509, 591, 891
HphI GGTGA 3 cut(s) 149, 625, 1292
Hpy166II GTNNAC 7 cut(s) 184, 289, 496, 550, 609, 1333, 1441
Hpy188I TCNGA 3 cut(s) 729, 1167, 1314
Hpy188III TCNNGA 5 cut(s) 281, 479, 796, 1006, 1271
Hpy8I GTNNAC 7 cut(s) 184, 289, 496, 550, 609, 1333, 1441
HpyAV CCTTC 5 cut(s) 793, 888, 1220, 1348, 1399
HpyCH4III ACNGT 5 cut(s) 613, 1061, 1079, 1292, 1325
HpyCH4IV ACGT 2 cut(s) 45, 186
HpyCH4V TGCA 9 cut(s) 320, 449, 525, 536, 848, 878, 994, 1106, 1375
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 875, 1106, 1109
HpyF3I CTNAG 3 cut(s) 17, 726, 782
HpySE526I ACGT 2 cut(s) 45, 186
Hsp92II CATG 5 cut(s) 228, 341, 422, 810, 848
HspAI GCGC 2 cut(s) 59, 1266
KflI GGGWCCC 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 166, 1153
Kzo9I GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
LmnI GCTCC 3 cut(s) 4, 989, 1273
Lsp1109I GCAGC 5 cut(s) 1060, 1090, 1096, 1112, 1118
LweI GCATC 2 cut(s) 1245, 1362
MaeI CTAG 2 cut(s) 978, 1019
MaeII ACGT 2 cut(s) 45, 186
MaeIII GTNAC 3 cut(s) 586, 595, 1292
MalI GATC 6 cut(s) 168, 234, 264, 417, 967, 1155
MboI GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
MboII GAAGA 7 cut(s) 108, 114, 186, 677, 1210, 1297, 1414
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 9, 337
MlsI TGGCCA 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 2 cut(s) 1016, 1235
MmeI TCCRAC 1 cut(s) 447
Mox20I TGGCCA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 1217
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 486, 677, 1013
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 1103, 1109
MspI CCGG 4 cut(s) 62, 509, 591, 891
MspR9I CCNGG 3 cut(s) 738, 891, 1133
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 2 cut(s) 738, 1133
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 4 cut(s) 13, 875, 1106, 1109
NciI CCSGG 1 cut(s) 891
NcoI CCATGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 441
NdeII GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
NlaIII CATG 5 cut(s) 228, 341, 422, 810, 848
NlaIV GGNNCC 8 cut(s) 214, 215, 334, 335, 370, 507, 985, 1191
NmeAIII GCCGAG 1 cut(s) 1004
PceI AGGCCT 1 cut(s) 787
PdmI GAANNNNTTC 1 cut(s) 1217
Pfl23II CGTACG 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 6 cut(s) 1047, 1050, 1102, 1105, 1108, 1111
PleI GAGTC 2 cut(s) 1016, 1235
PpsI GAGTC 2 cut(s) 1016, 1235
PpuMI RGGWCCY 3 cut(s) 213, 369, 1189
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 3 cut(s) 213, 369, 1189
Psp6I CCWGG 2 cut(s) 736, 1131
PspGI CCWGG 2 cut(s) 736, 1131
PspLI CGTACG 1 cut(s) 258
PspN4I GGNNCC 8 cut(s) 214, 215, 334, 335, 370, 507, 985, 1191
PspOMI GGGCCC 1 cut(s) 333
PspPI GGNCC 6 cut(s) 213, 333, 334, 369, 897, 1189
PspPPI RGGWCCY 3 cut(s) 213, 369, 1189
PstI CTGCAG 2 cut(s) 996, 1108
PvuII CAGCTG 2 cut(s) 1103, 1109
RsaI GTAC 4 cut(s) 239, 260, 551, 974
RsaNI GTAC 4 cut(s) 238, 259, 550, 973
RseI CAYNNNNRTG 1 cut(s) 282
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 486, 677, 1013
SatI GCNGC 6 cut(s) 1046, 1049, 1101, 1104, 1107, 1110
Sau3AI GATC 6 cut(s) 166, 232, 262, 415, 965, 1153
Sau96I GGNCC 6 cut(s) 213, 333, 334, 369, 897, 1189
SchI GAGTC 2 cut(s) 1016, 1235
ScrFI CCNGG 3 cut(s) 738, 891, 1133
SduI GDGCHC 2 cut(s) 9, 337
SfaNI GCATC 2 cut(s) 1245, 1362
SfcI CTRYAG 3 cut(s) 553, 992, 1104
SinI GGWCC 4 cut(s) 213, 369, 897, 1189
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 2 cut(s) 477, 1434
SmoI CTYRAG 2 cut(s) 477, 1434
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 2 cut(s) 1045, 1146
SspI AATATT 1 cut(s) 947
SspMI CTAG 2 cut(s) 978, 1019
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 3 cut(s) 736, 889, 1131
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 5 cut(s) 613, 1061, 1079, 1292, 1325
TaiI ACGT 2 cut(s) 48, 189
TaqI TCGA 5 cut(s) 622, 964, 1221, 1239, 1251
TaqII GACCGA 1 cut(s) 914
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 1048
Tru1I TTAA 3 cut(s) 486, 677, 1013
Tru9I TTAA 3 cut(s) 486, 677, 1013
TscAI CASTG 1 cut(s) 926
TseI GCWGC 5 cut(s) 1048, 1100, 1103, 1106, 1109
TspDTI ATGAA 4 cut(s) 261, 423, 584, 1410
TspGWI ACGGA 3 cut(s) 39, 225, 976
TspRI CASTG 1 cut(s) 926
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 213, 369, 897, 1189
XapI RAATTY 4 cut(s) 39, 268, 380, 560
XmnI GAANNNNTTC 1 cut(s) 1217
XspI CTAG 2 cut(s) 978, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.