Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015321

Physical Location & Seq

Genomic Coordinates Forward (+)

10311030 .. 10313104

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGAATTTCGTCGACGAGAATGGTTTTGCTTCTCTAAACCAAAACATCTTCACACGTGATCAAGAACACATGAAAGAAGAAGATTTTCCATTCGAAGTCGTCGACCAATCAAAACCTACAAGCTTTCTTCAAGATTTTCACCATCTTGATCATGATCATCAGTTTGATCATCATCATCATCATGGCTCCTCATCTTCACATCCTTTGCTCAGCGTCCAAACTACGTCTTCTTGTATCAATAATGCTCCTTTCGAGCATTGCTCTTACCAAGAAAACATGGTCGATTTCTATGAAACTAAACCAAATTTGATGAATCATCATCATTTCCAAGCAGTGGAAAACTCATACTTCACTCGTAATCATCATCATCATCAAGAGATCAATTTGGTCGATGAACATGATGATCCTATGGACTTGGAGCAAAACAACATGATGATGATGAGGATGATCCCTTTTGATTACCCTCCTACAGAGACTTTCAAACCTATGAACTTCGTAATGCCAGATGAAATTTCATGTGTTTCTGCAGATAATGATTGTTATAGAGCAACAAGTTTCAACAAGACCAAACCATTTCTTACACGAAAGTTGTCTTCTTCTTCTTCATCATCATCATGGAAAGAAACCAAAAAGTCAACCTTAGTCAAAGGACAATGGACTGCTGAAGAAGACAGGGTACTGATTCAACTCGTGGAGAAGTATGGATTGCGTAAATGGTCGCATATCGCTCAAGTGTTACCGGGAAGAATCGGGAAACAATGTAGAGAGAGGTGGCATAACCATTTGAGACCTGACATTAAGAAAGAAACATGGAGTGAAGAAGAGGACAGAGTGTTGATAGAATTTCACAAAGAGATTGGAAACAAATGGGCAGAGATTGCGAAAAGACTCCCGGGAAGAACAGAGAACTCGATCAAGAACCATTGGAACGCAACAAAAAGAAGACAATTCTCTAAAAGAAAATGTAGATCTAAGTATCCAAGACCTTCTCTGTTGCAGGATTACATCAAGAGCTTGAATATGGGAGCTTTGATGGCTTCTTCTGTTCCTGCAAGAGGTAGACGCAGAGAGAGTAATAACAAGAAGAAGGATGTTGTTGTTGCGGTTGAGGAGAAGAAGAAGGAAGAGGAGGTGTATGGACAAGACAGGATTGTGCCTGAATGTGTGTTTACTGATGATTTTGGATTCAATGAGAAGCTGCTTGAGGAAGGATGTAGCATTGACTCTTTGCTTGATGACATTCCTCAGCCTGACATTGATGCTTTTGTTCATGGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

427

Amino Acids

50.12

Weight (kDa)

6.11

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	217 - 263	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	220 - 277	3.8e-21	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	269 - 311	6.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	272 - 321	3.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18770
fragaria_vesca	FvH4_5g05420
malus_domestica	MD06G1172900.v1.1 MD14G1179000.v1.1
prunus_persica	Prupe.5G172400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193411
rosa_laevigata	RLG00000004270
rosa_multiflora	Rmu_ssc0000092.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262120
rosa_rugosa	Rorug07G0009300
rosa_samantha	Rh7AG135900 Rh7BG136200 Rh7BG136300 Rh7CG139800 Rh7DG137600
rosa_wichuraiana	Rw7G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccI	GTMKAC	3 cut(s)	15, 105, 1063
AciI	CCGC	1 cut(s)	1106
AclWI	GGATC	2 cut(s)	401, 445
AcsI	RAATTY	4 cut(s)	7, 307, 513, 845
AcuI	CTGAAG	1 cut(s)	687
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	681
AfiI	CCNNNNNNNGG	2 cut(s)	337, 1058
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	134, 484, 562, 689, 1021, 1192
AluBI	AGCT	4 cut(s)	126, 1017, 1031, 1201
AluI	AGCT	4 cut(s)	126, 1017, 1031, 1201
Alw26I	GTCTC	2 cut(s)	470, 784
AlwI	GGATC	2 cut(s)	401, 445
Ama87I	CYCGRG	1 cut(s)	895
ApeKI	GCWGC	1 cut(s)	1201
ApoI	RAATTY	4 cut(s)	7, 307, 513, 845
Asp700I	GAANNNNTTC	1 cut(s)	87
AsuC2I	CCSGG	3 cut(s)	744, 896, 897
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	895
BarI	GAAGNNNNNNTAC	2 cut(s)	663, 695
BauI	CACGAG	1 cut(s)	692
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	4 cut(s)	222, 588, 678, 952
BbvCI	CCTCAGC	1 cut(s)	1248
BbvI	GCAGC	1 cut(s)	1188
BccI	CCATC	2 cut(s)	153, 1030
BciVI	GTATCC	1 cut(s)	990
BclI	TGATCA	4 cut(s)	61, 151, 157, 169
BcnI	CCSGG	3 cut(s)	744, 896, 897
BcoDI	GTCTC	2 cut(s)	470, 784
BfmI	CTRYAG	2 cut(s)	471, 528
BfuI	GTATCC	1 cut(s)	990
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	1 cut(s)	1202
BlpI	GCTNAGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	1203
Bme1390I	CCNGG	3 cut(s)	744, 896, 897
BmeT110I	CYCGRG	1 cut(s)	895
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	744, 896, 897
BmsI	GCATC	1 cut(s)	1252
BpiI	GAAGAC	4 cut(s)	222, 588, 678, 952
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu10I	CCTNAGC	1 cut(s)	1248
Bpu1102I	GCTNAGC	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	717, 1226
BpuMI	CCSGG	3 cut(s)	744, 896, 897
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	2 cut(s)	156, 174
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 1058
Bse3DI	GCAATG	1 cut(s)	259
Bse8I	GATNNNNATC	2 cut(s)	156, 174
BseDI	CCNNGG	1 cut(s)	895
BseGI	GGATG	4 cut(s)	202, 453, 1099, 1220
BseJI	GATNNNNATC	2 cut(s)	156, 174
BseLI	CCNNNNNNNGG	2 cut(s)	337, 1058
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	226, 1262
BseRI	GAGGAG	3 cut(s)	181, 1127, 1145
BseXI	GCAGC	1 cut(s)	1188
BsiHKCI	CYCGRG	1 cut(s)	895
BsiSI	CCGG	2 cut(s)	743, 896
BslI	CCNNNNNNNGG	2 cut(s)	337, 1058
BsmAI	GTCTC	2 cut(s)	470, 784
Bso31I	GGTCTC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	895
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
Bsp1720I	GCTNAGC	1 cut(s)	212
BspACI	CCGC	1 cut(s)	1106
BspCNI	CTCAG	2 cut(s)	225, 1261
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	2 cut(s)	401, 445
BspT104I	TTCGAA	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
BssSI	CACGAG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	692
Bst6I	CTCTTC	2 cut(s)	819, 1122
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	4 cut(s)	212, 643, 975, 1248
BstENI	CCTNNNNNAGG	1 cut(s)	1056
BstF5I	GGATG	4 cut(s)	202, 453, 1099, 1220
BstKTI	GATC	9 cut(s)	64, 154, 160, 172, 384, 409, 453, 918, 974
BstMAI	GTCTC	2 cut(s)	470, 784
BstMBI	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
BstMWI	GCNNNNNNNGC	2 cut(s)	881, 1037
BstSCI	CCNGG	3 cut(s)	742, 894, 895
BstSFI	CTRYAG	2 cut(s)	471, 528
BstV1I	GCAGC	1 cut(s)	1188
BstV2I	GAAGAC	4 cut(s)	222, 588, 678, 952
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	990
BtsCI	GGATG	4 cut(s)	202, 453, 1099, 1220
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	154
Cfr9I	CCCGGG	1 cut(s)	895
CseI	GACGC	2 cut(s)	205, 1074
Csp6I	GTAC	1 cut(s)	680
CviJI	RGCY	7 cut(s)	126, 189, 1017, 1031, 1040, 1201, 1252
CviKI_1	RGCY	7 cut(s)	126, 189, 1017, 1031, 1040, 1201, 1252
CviQI	GTAC	1 cut(s)	680
DdeI	CTNAG	4 cut(s)	212, 643, 975, 1248
DpnI	GATC	9 cut(s)	63, 153, 159, 171, 383, 408, 452, 917, 973
DpnII	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
Eam1104I	CTCTTC	2 cut(s)	819, 1122
EarI	CTCTTC	2 cut(s)	819, 1122
Eco31I	GGTCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	687
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	895
EcoNI	CCTNNNNNAGG	1 cut(s)	1056
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FbaI	TGATCA	4 cut(s)	61, 151, 157, 169
FblI	GTMKAC	3 cut(s)	15, 105, 1063
Fnu4HI	GCNGC	1 cut(s)	1202
FokI	GGATG	4 cut(s)	189, 460, 1106, 1227
Fsp4HI	GCNGC	1 cut(s)	1202
GluI	GCNGC	1 cut(s)	1202
HapII	CCGG	2 cut(s)	743, 896
HgaI	GACGC	2 cut(s)	205, 1074
HincII	GTYRAC	3 cut(s)	16, 106, 639
HindII	GTYRAC	3 cut(s)	16, 106, 639
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	7 cut(s)	316, 685, 750, 891, 1188, 1226, 1278
HpaII	CCGG	2 cut(s)	743, 896
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	5 cut(s)	16, 106, 639, 1064, 1173
Hpy188I	TCNGA	1 cut(s)	1283
Hpy188III	TCNNGA	8 cut(s)	65, 134, 149, 155, 377, 754, 919, 1012
Hpy8I	GTNNAC	5 cut(s)	16, 106, 639, 1064, 1173
Hpy99I	CGWCG	3 cut(s)	17, 20, 107
HpyAV	CCTTC	4 cut(s)	999, 1084, 1117, 1205
HpyCH4IV	ACGT	2 cut(s)	58, 227
HpyCH4V	TGCA	3 cut(s)	530, 1000, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	881, 1037
HpyF3I	CTNAG	4 cut(s)	212, 643, 975, 1248
HpySE526I	ACGT	2 cut(s)	58, 227
Ksp22I	TGATCA	4 cut(s)	61, 151, 157, 169
Kzo9I	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
LmnI	GCTCC	4 cut(s)	194, 253, 421, 1028
Lsp1109I	GCAGC	1 cut(s)	1188
LweI	GCATC	1 cut(s)	1252
MaeII	ACGT	2 cut(s)	58, 227
MaeIII	GTNAC	1 cut(s)	738
MalI	GATC	9 cut(s)	63, 153, 159, 171, 383, 408, 452, 917, 973
MboI	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
MflI	RGATCY	1 cut(s)	971
MluCI	AATT	6 cut(s)	7, 307, 385, 513, 845, 950
MlyI	GAGTC	3 cut(s)	885, 1220, 1272
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	801
MslI	CAYNNNNRTG	3 cut(s)	183, 437, 616
MspI	CCGG	2 cut(s)	743, 896
MspR9I	CCNGG	3 cut(s)	744, 896, 897
MwoI	GCNNNNNNNGC	2 cut(s)	881, 1037
NciI	CCSGG	3 cut(s)	744, 896, 897
NdeII	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
NlaIV	GGNNCC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	4 cut(s)	316, 685, 750, 1188
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	1203
PleI	GAGTC	3 cut(s)	885, 1220, 1272
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	3 cut(s)	885, 1220, 1272
Ppu21I	YACGTR	1 cut(s)	59
PspCI	CACGTG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	971
RsaI	GTAC	1 cut(s)	681
RsaNI	GTAC	1 cut(s)	680
RseI	CAYNNNNRTG	3 cut(s)	183, 437, 616
SalI	GTCGAC	2 cut(s)	14, 104
SaqAI	TTAA	1 cut(s)	801
SatI	GCNGC	1 cut(s)	1202
Sau3AI	GATC	9 cut(s)	61, 151, 157, 169, 381, 406, 450, 915, 971
SchI	GAGTC	3 cut(s)	885, 1220, 1272
ScrFI	CCNGG	3 cut(s)	744, 896, 897
SfaNI	GCATC	1 cut(s)	1252
SfcI	CTRYAG	2 cut(s)	471, 528
SfuI	TTCGAA	1 cut(s)	96
SgrDI	CGTCGACG	1 cut(s)	14
SmaI	CCCGGG	1 cut(s)	897
SmiMI	CAYNNNNRTG	3 cut(s)	183, 437, 616
SmlI	CTYRAG	2 cut(s)	732, 1205
SmoI	CTYRAG	2 cut(s)	732, 1205
Sse9I	AATT	6 cut(s)	7, 307, 385, 513, 845, 950
SsiI	CCGC	1 cut(s)	1106
StyD4I	CCNGG	3 cut(s)	742, 894, 895
TaiI	ACGT	2 cut(s)	61, 230
TaqI	TCGA	7 cut(s)	15, 96, 105, 255, 285, 393, 914
TasI	AATT	6 cut(s)	7, 307, 385, 513, 845, 950
TfiI	GAWTC	4 cut(s)	316, 685, 750, 1188
Tru1I	TTAA	1 cut(s)	801
Tru9I	TTAA	1 cut(s)	801
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	1201
TspDTI	ATGAA	9 cut(s)	89, 309, 329, 411, 506, 507, 525, 597, 1262
TspMI	CCCGGG	1 cut(s)	895
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	1056
XapI	RAATTY	4 cut(s)	7, 307, 513, 845
XmaI	CCCGGG	1 cut(s)	895
XmiI	GTMKAC	3 cut(s)	15, 105, 1063
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.