Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Reverse (-)

79662885 .. 79664028

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTCGGATTCCATGCTGTGAGAAGGACAATGTGAAAAGGGGACAGTGGACTCCTGAAGAAGATAACAAGCTCTCTTCCTACATTGCCCAGCACGGTACTCGCAATTGGCGTCTCATCCCAAAGAATGCCGGTTTACAAAGATGTGGGAAGAGTTGTAGGCTACGTTGGACCAACTACCTTCGACCTGACCTCAAGCACGGGCAGTTCTCAGAGGCGGAAGAGCAAACCATTGTCAAGCTCCACTCTGTTGTTGGCAACCGATGGTCCTTAATTGCTGCACAACTTCCTGGTCGCACTGACAATGATGTGAAAAACCACTGGAATACAAAGCTCAAGAAGAAGCTGTCGGGTATGGGGATAGATCCAGTCACCCACAAACCCTTTTCCCACCTCATGGCCGAGATTGCAACCACACTGGCACCACCCAACGTGGCTAACCTTGCAGAAGCAGCACTCGGTTGTTTTAAGGATGAAATGCTCCACCTCCTCACAAAGAAGCCGATCGACTTCCAGTTCCAACATTCTAACACAACACCCGGGAACCGCACAGCCACTTATATCAACAATAAGGAAGAAAAAGATGATACGATTGAGAAGATCAAGATTGGTCTATCAAGGGCTATGCAAGAACCAGACATGTTACATTCACAAAAATCTTGGGATCCTACCGGAGCAACATCTGCAAACCTTACAGGTAACTGCAGTGCTTTTCCCTTGCATTCTATATCTGGATTTCAGTATGGGCTGTCAACATTCGGAAATGAAGGGGGTGGTTCACCATGGAGCCAGAGCATGTGTACGGGAAGCACATGCACAGGGGCAGACCAGCAAGGTCATTTGCATGACAAACTTGATGAAGAAATTGGAGAGGAGTCTGAGGGTGGAAAAGAGTTGAGAAATGGATCCAACATATTCAACTCAGATAGCATCTTGTGGGATTTACCATCTGACGATCTAATGAATCCAATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

325

Amino Acids

36.07

Weight (kDa)

6.46

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	6.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	6.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	2 cut(s)	218, 547
AclWI	GGATC	5 cut(s)	359, 659, 672, 900, 913
AcoI	YGGCCR	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	2 cut(s)	100, 802
AfiI	CCNNNNNNNGG	1 cut(s)	397
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	1 cut(s)	919
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	73, 241, 334, 346
AluI	AGCT	4 cut(s)	73, 241, 334, 346
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	5 cut(s)	359, 659, 672, 900, 913
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	278, 452
AspS9I	GGNCC	2 cut(s)	171, 267
AsuC2I	CCSGG	2 cut(s)	540, 541
AsuHPI	GGTGA	2 cut(s)	364, 771
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	171, 267
BamHI	GGATCC	2 cut(s)	664, 905
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	265, 464
BccI	CCATC	2 cut(s)	258, 955
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	540, 541
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	703
BisI	GCNGC	2 cut(s)	279, 453
BlsI	GCNGC	2 cut(s)	280, 454
Bme1390I	CCNGG	3 cut(s)	291, 540, 541
Bme18I	GGWCC	2 cut(s)	171, 267
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	171, 267
BmiI	GGNNCC	5 cut(s)	423, 545, 666, 788, 907
BmrFI	CCNGG	3 cut(s)	291, 540, 541
BmsI	GCATC	1 cut(s)	939
BpuEI	CTTGAG	2 cut(s)	179, 320
BpuMI	CCSGG	2 cut(s)	540, 541
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	539, 782
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	326, 368, 423, 514
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	539, 782
BseGI	GGATG	2 cut(s)	117, 478
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	225, 870, 936
BseNI	ACTGG	4 cut(s)	326, 368, 423, 514
BseRI	GAGGAG	2 cut(s)	479, 887
BseXI	GCAGC	2 cut(s)	265, 464
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	3 cut(s)	132, 540, 672
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	133, 721
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
Bsp19I	CCATGG	1 cut(s)	782
BspACI	CCGC	2 cut(s)	218, 547
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	224, 871, 935
BspLI	GGNNCC	5 cut(s)	423, 545, 666, 788, 907
BspMAI	CTGCAG	1 cut(s)	707
BspPI	GGATC	5 cut(s)	359, 659, 672, 900, 913
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	326, 368, 423, 514
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	539, 782
BssMI	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	782
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	48, 98
Bst6I	CTCTTC	3 cut(s)	82, 146, 216
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	211, 879, 922
BstDSI	CCRYGG	1 cut(s)	782
BstF5I	GGATG	2 cut(s)	117, 478
BstKTI	GATC	6 cut(s)	367, 507, 603, 667, 908, 958
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 683
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	3 cut(s)	643, 799, 816
BstSCI	CCNGG	3 cut(s)	289, 538, 539
BstSFI	CTRYAG	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	265, 464
BstX2I	RGATCY	3 cut(s)	364, 664, 905
BstYI	RGATCY	3 cut(s)	364, 664, 905
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	117, 478
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	5 cut(s)	53, 297, 319, 416, 712
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	171, 267
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	99, 801
CviAII	CATG	7 cut(s)	15, 397, 640, 783, 796, 813, 845
CviQI	GTAC	2 cut(s)	99, 801
DdeI	CTNAG	3 cut(s)	211, 879, 922
DpnI	GATC	6 cut(s)	366, 506, 602, 666, 907, 957
DpnII	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	3 cut(s)	82, 146, 216
EarI	CTCTTC	3 cut(s)	82, 146, 216
EciI	GGCGGA	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	782
Eco47I	GGWCC	2 cut(s)	171, 267
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	782
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	7 cut(s)	18, 400, 643, 786, 799, 816, 848
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	7 cut(s)	14, 396, 639, 782, 795, 812, 844
Fnu4HI	GCNGC	2 cut(s)	279, 453
FokI	GGATG	2 cut(s)	104, 485
Fsp4HI	GCNGC	2 cut(s)	279, 453
GluI	GCNGC	2 cut(s)	279, 453
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	3 cut(s)	132, 540, 672
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	7 cut(s)	18, 400, 643, 786, 799, 816, 848
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	4 cut(s)	10, 52, 875, 964
HpaII	CCGG	3 cut(s)	132, 540, 672
HphI	GGTGA	2 cut(s)	364, 771
Hpy166II	GTNNAC	5 cut(s)	51, 137, 753, 779, 801
Hpy188I	TCNGA	6 cut(s)	9, 214, 761, 880, 925, 952
Hpy188III	TCNNGA	4 cut(s)	56, 337, 604, 732
Hpy8I	GTNNAC	5 cut(s)	51, 137, 753, 779, 801
HpyAV	CCTTC	3 cut(s)	19, 191, 761
HpyCH4III	ACNGT	2 cut(s)	48, 98
HpyCH4IV	ACGT	2 cut(s)	166, 432
HpyCH4V	TGCA	9 cut(s)	281, 410, 446, 628, 686, 705, 721, 816, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 683
HpyF3I	CTNAG	3 cut(s)	211, 879, 922
HpySE526I	ACGT	2 cut(s)	166, 432
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	7 cut(s)	18, 400, 643, 786, 799, 816, 848
Kzo9I	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	246, 486, 674, 786
Lsp1109I	GCAGC	2 cut(s)	265, 464
LweI	GCATC	1 cut(s)	939
MaeII	ACGT	2 cut(s)	166, 432
MaeIII	GTNAC	3 cut(s)	370, 642, 698
MalI	GATC	6 cut(s)	366, 506, 602, 666, 907, 957
MboI	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
MboII	GAAGA	9 cut(s)	69, 71, 74, 163, 233, 352, 587, 610, 872
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	3 cut(s)	364, 664, 905
MluCI	AATT	3 cut(s)	106, 273, 864
MlyI	GAGTC	2 cut(s)	46, 884
MmeI	TCCRAC	3 cut(s)	149, 544, 933
MnlI	CCTC	7 cut(s)	203, 208, 404, 497, 500, 865, 874
MseI	TTAA	2 cut(s)	272, 468
MslI	CAYNNNNRTG	1 cut(s)	843
MspI	CCGG	3 cut(s)	132, 540, 672
MspR9I	CCNGG	3 cut(s)	291, 540, 541
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	2 cut(s)	133, 721
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 683
NciI	CCSGG	2 cut(s)	540, 541
NcoI	CCATGG	1 cut(s)	782
NdeII	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
NlaIII	CATG	7 cut(s)	18, 400, 643, 786, 799, 816, 848
NlaIV	GGNNCC	5 cut(s)	423, 545, 666, 788, 907
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	3 cut(s)	643, 799, 816
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	133, 721
PfeI	GAWTC	2 cut(s)	10, 964
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	280, 454
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	2 cut(s)	46, 883
PpsI	GAGTC	2 cut(s)	46, 883
PscI	ACATGT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	5 cut(s)	423, 545, 666, 788, 907
PspPI	GGNCC	2 cut(s)	171, 267
PstI	CTGCAG	1 cut(s)	707
PsuI	RGATCY	3 cut(s)	364, 664, 905
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	2 cut(s)	100, 802
RsaNI	GTAC	2 cut(s)	99, 801
RseI	CAYNNNNRTG	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	272, 468
SatI	GCNGC	2 cut(s)	279, 453
Sau3AI	GATC	6 cut(s)	364, 504, 600, 664, 905, 955
Sau96I	GGNCC	2 cut(s)	171, 267
SchI	GAGTC	2 cut(s)	46, 884
ScrFI	CCNGG	3 cut(s)	291, 540, 541
SfaNI	GCATC	1 cut(s)	939
SfcI	CTRYAG	1 cut(s)	703
SinI	GGWCC	2 cut(s)	171, 267
SmaI	CCCGGG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	2 cut(s)	194, 335
SmoI	CTYRAG	2 cut(s)	194, 335
Sse9I	AATT	3 cut(s)	106, 273, 864
SsiI	CCGC	2 cut(s)	218, 547
StyD4I	CCNGG	3 cut(s)	289, 538, 539
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	2 cut(s)	48, 98
TaiI	ACGT	2 cut(s)	169, 435
TaqI	TCGA	2 cut(s)	184, 507
TasI	AATT	3 cut(s)	106, 273, 864
TfiI	GAWTC	2 cut(s)	10, 964
Tru1I	TTAA	2 cut(s)	272, 468
Tru9I	TTAA	2 cut(s)	272, 468
TscAI	CASTG	5 cut(s)	53, 304, 326, 423, 712
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	2 cut(s)	278, 452
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	489, 780, 873, 977
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	5 cut(s)	53, 304, 326, 423, 712
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	171, 267
XceI	RCATGY	3 cut(s)	643, 799, 816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.