Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Reverse (-)

81413022 .. 81413603

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG526500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGAGATTGCAACCACACTGGCACCACCCAACGTGGCTAACCTTGCAGAAGCAGCACTCGGTTGTTTTAAGGATGAAATGCTCCACCTCCTCACAAAGAAGCCGATCAACTTCCAGTTCCAACATTCTAACACAACACCCGGGAACCGCACAGCCACTTATATCAACAGTAAGGAAGAAAAAGATGATACGATTGAGAAGATCAAGATTGGTCTATCAAGGGCTATGCAAGAACCAGACATGTTACATTCACAAAAATCTTGGGATCCTACCGGAGCAACATCTGCAAACCTTACAGGTAACTGCAGTGCTTTTCCCTTGCATTCGATATCTGGATTTCAGTATGGGCTGTCAACATTCGGAAATGAAGGGGGTGGTTCACCATGGAGCCAGAGCATGTGTACGGGAAGCACATGCACAGGGGCAGACCAGCAAGGTCATTTGCATGACAAACTTGATGAAGAAATTGGAGAGGAGTCTGAGGGTGGAAAAGAGTTGAGAAATGGTTCTAACATATTCAACTCAGATAGCATCTTGTGGGATTTACCATCTGACGATCTAATGAATCCAATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

193

Amino Acids

20.86

Weight (kDa)

4.7

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	263, 276
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	523
AlwI	GGATC	2 cut(s)	263, 276
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	508
AsuC2I	CCSGG	2 cut(s)	144, 145
AsuHPI	GGTGA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	144, 145
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	144, 145
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	4 cut(s)	27, 149, 270, 392
BmrFI	CCNGG	2 cut(s)	144, 145
BmsI	GCATC	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	144, 145
BsaJI	CCNNGG	2 cut(s)	143, 386
BsaWI	WCCGGW	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	27, 118
BseDI	CCNNGG	2 cut(s)	143, 386
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	474, 540
BseNI	ACTGG	2 cut(s)	27, 118
BseRI	GAGGAG	2 cut(s)	83, 491
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	144, 276
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	4 cut(s)	108, 204, 268, 559
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	475, 539
BspLI	GGNNCC	4 cut(s)	27, 149, 270, 392
BspMAI	CTGCAG	1 cut(s)	311
BspPI	GGATC	2 cut(s)	263, 276
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	27, 118
BssECI	CCNNGG	2 cut(s)	143, 386
BssMI	GATC	4 cut(s)	108, 204, 268, 559
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	483, 526
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	4 cut(s)	111, 207, 271, 562
BstMBI	GATC	4 cut(s)	108, 204, 268, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 47, 56, 287
BstNSI	RCATGY	3 cut(s)	247, 403, 420
BstSCI	CCNGG	2 cut(s)	142, 143
BstSFI	CTRYAG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	20, 316
Cfr9I	CCCGGG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	5 cut(s)	244, 387, 400, 417, 449
CviJI	RGCY	7 cut(s)	5, 41, 106, 158, 227, 352, 393
CviKI_1	RGCY	7 cut(s)	5, 41, 106, 158, 227, 352, 393
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	483, 526
DpnI	GATC	4 cut(s)	110, 206, 270, 561
DpnII	GATC	4 cut(s)	108, 204, 268, 559
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	5 cut(s)	247, 390, 403, 420, 452
FaiI	YATR	9 cut(s)	165, 230, 245, 348, 388, 401, 418, 450, 518
FatI	CATG	5 cut(s)	243, 386, 399, 416, 448
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	144, 276
Hin1II	CATG	5 cut(s)	247, 390, 403, 420, 452
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	2 cut(s)	479, 568
HpaII	CCGG	2 cut(s)	144, 276
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	3 cut(s)	357, 383, 405
Hpy188I	TCNGA	4 cut(s)	365, 484, 529, 556
Hpy188III	TCNNGA	2 cut(s)	208, 336
Hpy8I	GTNNAC	3 cut(s)	357, 383, 405
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	14, 50, 232, 290, 309, 325, 420, 448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 47, 56, 287
HpyF3I	CTNAG	2 cut(s)	483, 526
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	247, 390, 403, 420, 452
Kzo9I	GATC	4 cut(s)	108, 204, 268, 559
LmnI	GCTCC	3 cut(s)	90, 278, 390
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	246, 302
MalI	GATC	4 cut(s)	110, 206, 270, 561
MboI	GATC	4 cut(s)	108, 204, 268, 559
MboII	GAAGA	3 cut(s)	191, 214, 476
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	101, 104, 469, 478
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	2 cut(s)	144, 276
MspR9I	CCNGG	2 cut(s)	144, 145
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	11, 47, 56, 287
NciI	CCSGG	2 cut(s)	144, 145
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	4 cut(s)	108, 204, 268, 559
NlaIII	CATG	5 cut(s)	247, 390, 403, 420, 452
NlaIV	GGNNCC	4 cut(s)	27, 149, 270, 392
NmeAIII	GCCGAG	1 cut(s)	31
NspI	RCATGY	3 cut(s)	247, 403, 420
PciI	ACATGT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PscI	ACATGT	1 cut(s)	243
PspN4I	GGNNCC	4 cut(s)	27, 149, 270, 392
PstI	CTGCAG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	108, 204, 268, 559
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	144, 145
SetI	ASST	6 cut(s)	39, 48, 93, 297, 304, 442
SfaNI	GCATC	1 cut(s)	543
SfcI	CTRYAG	1 cut(s)	307
SmaI	CCCGGG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	142, 143
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	329
TasI	AATT	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	27, 316
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	93, 384, 477, 581
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	2 cut(s)	27, 316
XceI	RCATGY	3 cut(s)	247, 403, 420
XmaI	CCCGGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.