Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Reverse (-)

81490193 .. 81490587

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCACGATTGAGAAGATCAAGATTGGTTTATCAAGGGCTATGCAAGAACCAGACACGTTACATTCACAAAAATATTGGGATCCTACCGGAGCAACATCAGCAAACCTTACAGTATGGGCCGTCAACATTCGGAAATGAAGGGGGTGGTTCACCATGGAGCCAGAGCATGTGTACGGGAAGCACATGCACAGGGGCAGACCAGCAAGGTCACTTGCATGACAAACTTGATGAACAAATTGGAGAGGAGTCTGAGGGTGGAAAAGAGTTGAGAAATGGATCCAACATATTCAACTCAGATAGCATCTTGTGGGATTTACCATCTGACGATCTAATGAATCCAATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

5.44

Isoelectric Point (pI)

73.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	76, 89, 273, 286
AfaI	GTAC	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	292
AlwI	GGATC	4 cut(s)	76, 89, 273, 286
AoxI	GGCC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	144
BamHI	GGATCC	2 cut(s)	81, 278
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	83, 161, 280
BmsI	GCATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	243, 309
BseRI	GAGGAG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	89
BsnI	GGCC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	17, 81, 278, 328
Bsp19I	CCATGG	1 cut(s)	155
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	244, 308
BspLI	GGNNCC	3 cut(s)	83, 161, 280
BspPI	GGATC	4 cut(s)	76, 89, 273, 286
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	17, 81, 278, 328
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	252, 295
BstDSI	CCRYGG	1 cut(s)	155
BstKTI	GATC	4 cut(s)	20, 84, 281, 331
BstMBI	GATC	4 cut(s)	17, 81, 278, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNSI	RCATGY	2 cut(s)	172, 189
BstX2I	RGATCY	2 cut(s)	81, 278
BstYI	RGATCY	2 cut(s)	81, 278
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	4 cut(s)	156, 169, 186, 218
CviJI	RGCY	3 cut(s)	40, 121, 162
CviKI_1	RGCY	3 cut(s)	40, 121, 162
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	252, 295
DpnI	GATC	4 cut(s)	19, 83, 280, 330
DpnII	GATC	4 cut(s)	17, 81, 278, 328
Eco130I	CCWWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	4 cut(s)	159, 172, 189, 221
FaiI	YATR	7 cut(s)	43, 117, 157, 170, 187, 219, 287
FatI	CATG	4 cut(s)	155, 168, 185, 217
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	4 cut(s)	159, 172, 189, 221
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	248, 337
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	3 cut(s)	126, 152, 174
Hpy188I	TCNGA	4 cut(s)	134, 253, 298, 325
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	3 cut(s)	126, 152, 174
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	45, 189, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	252, 295
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	159, 172, 189, 221
Kzo9I	GATC	4 cut(s)	17, 81, 278, 328
LmnI	GCTCC	2 cut(s)	91, 159
LpnPI	CCDG	5 cut(s)	65, 102, 176, 177, 215
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	59, 209
MalI	GATC	4 cut(s)	19, 83, 280, 330
MboI	GATC	4 cut(s)	17, 81, 278, 328
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	2 cut(s)	81, 278
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	2 cut(s)	238, 247
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	17, 81, 278, 328
NlaIII	CATG	4 cut(s)	159, 172, 189, 221
NlaIV	GGNNCC	3 cut(s)	83, 161, 280
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	2 cut(s)	172, 189
PfeI	GAWTC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	83, 161, 280
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	81, 278
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	216
Sau3AI	GATC	4 cut(s)	17, 81, 278, 328
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	257
SetI	ASST	3 cut(s)	61, 110, 211
SfaNI	GCATC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	237
SspI	AATATT	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	61
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	153, 246, 350
XceI	RCATGY	2 cut(s)	172, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.