Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Reverse (-)

35049473 .. 35050942

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGTCGGATTCCATGCTGCGAGAAGGACAATGTGAAGAGGGGGCAGTGGACTCCTGAAGAAGATAACAAGCTCTCTTCCTATATTGCGCAGCACGGCACTCGCAATTGGCGTCTCATCCCAAAGAATGCCGGTTTACAAAGATGTGGGAAGAGTTGCAGGCTACGTTGGACCAACTACCTTCGGCCTGACCTCAAGCATGGGCAGTTCTCAGACGCAGAAGAGCAAACCATTGTTAAGCTCCACTCTGTTGTTGGCAACCGATGGTACTTAATCGCTGCGCAACTTCCCGGTCGCACTGACAATGATGTGAAGAACCACTGGAATACAAAGCTGAAGAAGAAGCTGTCAGGGATGGGGATAGATCCAGTCACACACAAGCCCTTTTCCCACCTCATGGCCGAGATTGCAACCACACTGGCACCGCCGAACGTGGCGAACCTTGCAGAAGCAGCACTCGGTTGTTTTAAGGATGAAATGCTCCACCTCCTCACAAAGAAACCCATCGACTTCCAGTTCCAACATTCTAATGTAACTCCCGGGAACCGCACGGCCAACTATATCAACAATAAGCAGGAAGAGAAAGATGACACGATTGAGAAGATCAAGATTGGTCTATCGAGGGCTATGCAAGAACCAGACGTGCTACATTCACAAAAATCTTGGGATCCTACCGGAGCAACATCTGCAAACCTTACAGGTAACTGCAGTGCTTTTCCCATGCATTCTATGTCTGGATTTCAGTACGGGCTGTCAACCTTCGGAAATGAAGGCGGCGGTTCACCGTGGAGCCAGAGCATGTGTACGGGAAGCACATGCACAGGGGCAGACCAGCAAGGTCATTTGCACGACAAACTTGATGAAGAAATTGGAGAGGAGTCAGAGGATGGAAAAGAGATGAGAAGTGGATCTAACATATTCAACTCAGATAGTATCTTGTGGGATTTACCCTCTGATGATCTAATGAATCCAATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

36.33

Weight (kDa)

6.31

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	8.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	90, 282
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	4 cut(s)	425, 547, 774, 777
AclWI	GGATC	4 cut(s)	359, 662, 675, 916
AcoI	YGGCCR	2 cut(s)	399, 552
AcuI	CTGAAG	2 cut(s)	78, 356
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	269, 746, 805
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	922
AjiI	CACGTC	1 cut(s)	643
AluBI	AGCT	4 cut(s)	73, 241, 334, 346
AluI	AGCT	4 cut(s)	73, 241, 334, 346
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	4 cut(s)	359, 662, 675, 916
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	185, 399, 552
ApeKI	GCWGC	4 cut(s)	18, 91, 278, 452
AspLEI	GCGC	2 cut(s)	91, 283
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	3 cut(s)	291, 540, 541
AsuHPI	GGTGA	1 cut(s)	774
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	5, 103, 265, 464
BccI	CCATC	4 cut(s)	258, 349, 512, 881
BceAI	ACGGC	2 cut(s)	112, 567
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 610, 644
BcnI	CCSGG	3 cut(s)	291, 540, 541
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	706
BisI	GCNGC	5 cut(s)	19, 92, 279, 453, 775
BlsI	GCNGC	5 cut(s)	20, 93, 280, 454, 776
Bme1390I	CCNGG	3 cut(s)	291, 540, 541
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	4 cut(s)	423, 545, 669, 791
BmrFI	CCNGG	3 cut(s)	291, 540, 541
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	3 cut(s)	291, 540, 541
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	539, 785
BsaWI	WCCGGW	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	326, 368, 423, 514
BseDI	CCNNGG	2 cut(s)	539, 785
BseGI	GGATG	4 cut(s)	117, 360, 478, 892
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	225, 939
BseNI	ACTGG	4 cut(s)	326, 368, 423, 514
BseRI	GAGGAG	2 cut(s)	479, 890
BseXI	GCAGC	4 cut(s)	5, 103, 265, 464
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	3 cut(s)	187, 401, 554
BshNI	GGYRCC	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	4 cut(s)	132, 291, 540, 675
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	133, 724
BsnI	GGCC	3 cut(s)	187, 401, 554
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	5 cut(s)	364, 603, 667, 908, 958
BspACI	CCGC	4 cut(s)	425, 547, 774, 777
BspANI	GGCC	3 cut(s)	187, 401, 554
BspCNI	CTCAG	2 cut(s)	224, 938
BspLI	GGNNCC	4 cut(s)	423, 545, 669, 791
BspMAI	CTGCAG	1 cut(s)	710
BspPI	GGATC	4 cut(s)	359, 662, 675, 916
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	326, 368, 423, 514
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	539, 785
BssMI	GATC	5 cut(s)	364, 603, 667, 908, 958
BssNI	GRCGYC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	5 cut(s)	32, 82, 146, 216, 573
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	211, 925
BstDSI	CCRYGG	1 cut(s)	785
BstF5I	GGATG	4 cut(s)	117, 360, 478, 892
BstHHI	GCGC	2 cut(s)	91, 283
BstKTI	GATC	5 cut(s)	367, 606, 670, 911, 961
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	5 cut(s)	364, 603, 667, 908, 958
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
BstNSI	RCATGY	2 cut(s)	802, 819
BstSCI	CCNGG	3 cut(s)	289, 538, 539
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	4 cut(s)	5, 103, 265, 464
BstX2I	RGATCY	3 cut(s)	364, 667, 908
BstYI	RGATCY	3 cut(s)	364, 667, 908
BsuRI	GGCC	3 cut(s)	187, 401, 554
BtgI	CCRYGG	1 cut(s)	785
BtrI	CACGTC	1 cut(s)	643
BtsCI	GGATG	4 cut(s)	117, 360, 478, 892
BtsI	GCAGTG	2 cut(s)	53, 715
BtsIMutI	CAGTG	5 cut(s)	53, 297, 319, 416, 715
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	2 cut(s)	91, 283
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	2 cut(s)	101, 224
Csp6I	GTAC	3 cut(s)	268, 745, 804
CviAII	CATG	6 cut(s)	15, 200, 397, 721, 799, 816
CviQI	GTAC	3 cut(s)	268, 745, 804
DdeI	CTNAG	2 cut(s)	211, 925
DpnI	GATC	5 cut(s)	366, 605, 669, 910, 960
DpnII	GATC	5 cut(s)	364, 603, 667, 908, 958
EaeI	YGGCCR	2 cut(s)	399, 552
Eam1104I	CTCTTC	5 cut(s)	32, 82, 146, 216, 573
EarI	CTCTTC	5 cut(s)	32, 82, 146, 216, 573
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	78, 356
Eco88I	CYCGRG	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	6 cut(s)	18, 203, 400, 724, 802, 819
FatI	CATG	6 cut(s)	14, 199, 396, 720, 798, 815
Fnu4HI	GCNGC	5 cut(s)	19, 92, 279, 453, 775
FokI	GGATG	4 cut(s)	104, 367, 485, 899
Fsp4HI	GCNGC	5 cut(s)	19, 92, 279, 453, 775
FspI	TGCGCA	2 cut(s)	90, 282
GlaI	GCGC	2 cut(s)	90, 282
GluI	GCNGC	5 cut(s)	19, 92, 279, 453, 775
HaeIII	GGCC	3 cut(s)	187, 401, 554
HapII	CCGG	4 cut(s)	132, 291, 540, 675
HgaI	GACGC	2 cut(s)	101, 224
HhaI	GCGC	2 cut(s)	91, 283
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	6 cut(s)	18, 203, 400, 724, 802, 819
Hin6I	GCGC	2 cut(s)	89, 281
HinP1I	GCGC	2 cut(s)	89, 281
HincII	GTYRAC	1 cut(s)	756
HindII	GTYRAC	1 cut(s)	756
HinfI	GANTC	4 cut(s)	10, 52, 878, 967
HpaII	CCGG	4 cut(s)	132, 291, 540, 675
HphI	GGTGA	1 cut(s)	774
Hpy166II	GTNNAC	5 cut(s)	51, 137, 756, 782, 804
Hpy188I	TCNGA	7 cut(s)	9, 214, 764, 883, 928, 955, 980
Hpy188III	TCNNGA	3 cut(s)	56, 607, 735
Hpy8I	GTNNAC	5 cut(s)	51, 137, 756, 782, 804
HpyAV	CCTTC	4 cut(s)	19, 191, 764, 769
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4IV	ACGT	3 cut(s)	166, 432, 642
HpyCH4V	TGCA	9 cut(s)	159, 410, 446, 631, 689, 708, 724, 819, 847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
HpyF3I	CTNAG	2 cut(s)	211, 925
HpySE526I	ACGT	3 cut(s)	166, 432, 642
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	6 cut(s)	18, 203, 400, 724, 802, 819
HspAI	GCGC	2 cut(s)	89, 281
Kzo9I	GATC	5 cut(s)	364, 603, 667, 908, 958
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	246, 486, 677, 789
Lsp1109I	GCAGC	4 cut(s)	5, 103, 265, 464
MaeII	ACGT	3 cut(s)	166, 432, 642
MaeIII	GTNAC	3 cut(s)	370, 532, 701
MalI	GATC	5 cut(s)	366, 605, 669, 910, 960
MboI	GATC	5 cut(s)	364, 603, 667, 908, 958
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	3 cut(s)	364, 667, 908
MluCI	AATT	2 cut(s)	106, 867
MlyI	GAGTC	2 cut(s)	46, 887
MmeI	TCCRAC	2 cut(s)	149, 544
MnlI	CCTC	9 cut(s)	33, 203, 404, 497, 500, 615, 868, 877, 961
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	3 cut(s)	237, 272, 468
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	4 cut(s)	132, 291, 540, 675
MspR9I	CCNGG	3 cut(s)	291, 540, 541
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	2 cut(s)	133, 724
MwoI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
NciI	CCSGG	3 cut(s)	291, 540, 541
NdeII	GATC	5 cut(s)	364, 603, 667, 908, 958
NlaIII	CATG	6 cut(s)	18, 203, 400, 724, 802, 819
NlaIV	GGNNCC	4 cut(s)	423, 545, 669, 791
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	370
NsbI	TGCGCA	2 cut(s)	90, 282
NsiI	ATGCAT	1 cut(s)	726
NspI	RCATGY	2 cut(s)	802, 819
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	133, 724
PfeI	GAWTC	2 cut(s)	10, 967
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	20, 93, 280, 454, 776
PleI	GAGTC	2 cut(s)	46, 886
PpsI	GAGTC	2 cut(s)	46, 886
PspN4I	GGNNCC	4 cut(s)	423, 545, 669, 791
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	3 cut(s)	364, 667, 908
RsaI	GTAC	3 cut(s)	269, 746, 805
RsaNI	GTAC	3 cut(s)	268, 745, 804
RseI	CAYNNNNRTG	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	237, 272, 468
SatI	GCNGC	5 cut(s)	19, 92, 279, 453, 775
Sau3AI	GATC	5 cut(s)	364, 603, 667, 908, 958
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	46, 887
ScrFI	CCNGG	3 cut(s)	291, 540, 541
SfcI	CTRYAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	106, 867
SsiI	CCGC	4 cut(s)	425, 547, 774, 777
StyD4I	CCNGG	3 cut(s)	289, 538, 539
TaaI	ACNGT	1 cut(s)	786
TaiI	ACGT	3 cut(s)	169, 435, 645
TaqI	TCGA	2 cut(s)	507, 620
TasI	AATT	2 cut(s)	106, 867
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	2 cut(s)	10, 967
Tru1I	TTAA	3 cut(s)	237, 272, 468
Tru9I	TTAA	3 cut(s)	237, 272, 468
TscAI	CASTG	5 cut(s)	53, 304, 326, 423, 715
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	18, 91, 278, 452
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	489, 783, 876, 980
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	5 cut(s)	53, 304, 326, 423, 715
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	2 cut(s)	802, 819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.