MD11G1041900.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
3585069 .. 3586336
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1041900.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGGGTCGGATTCCATGCTGTGAGAAGGACACTGTGAAAAGGGGGCAGTGGACTCCTGAAGAAGATAACAAGCTCTCCTCCTACATTGCCCAACATGGCACTCGTAACTGGCGCCTCATCCCCAAAAGTGCTGGTAATTACTATTTACAACTGCAAAAACTCTCTCTCTCTCTCTCTCTCTTCCTGAAACGTTCTTCATTTGGTTTACAAGGTTTACAAAGATCTGGGAAAAGCTGCAGGCTACGTTGGACAAACTACCTTCGCCCCGACCTTAAGCACGGACAATTCTCCGACGCGGAAGAGCAAATAATTGTTAAGCTGCACTCCATTGTTGGCAACCGATGGTCGTTGATTGCAGCGCGACTACCTGGCCGCACCGACAACGATGTGAAAAATCACTGGAACACCAAGCTGAAGAAGAAGCTATCAGGCATGGGGATCGACCCCGTCACACACAAACCCTTTTCCCACCTCATGGCCGAGATTGCAACCACACTAGAGCCGCCACAGGCGGCTCACCTTGCAGAAGCAGCACTCGGCTTCTTTAAGGACAAAATGCTCCACCTCCTTACAAAGAAGCGCATCGACTTCCAGCTCCAACACATCAATCCAACGCCGGGAAACAGCACCGCCACGTACAGTAACAGCAAGCAGGAAGAAAAAGACGACACTATCGAAAAGATCAAGATTGGTTTATCTAGGGCAATGCAAGAACAACCAGACATGTTGACCTCAAACAAACCTTGGATGGACACTACTGGAGCATCACCTGGGAACTTCACAGGGAACTGCAGTGCTTTCCCCTTGCCCATGTCTGGATTTCAGTACGGCCATTCTACGTTTGGGAACGAAGGCGATATTGGATCGCCGTGGAGCCAGAGTCTGTGTGCTGGAAGTACGTGCACGGCAGCGGCGGACCAGCAGGGCCAGTTGGATGACAAACTTGAGGTGGAAGAAAATGGAGAGGAGTCCGCGGGTGGAAAGGAGCTTAGAAACGGATCATCCAACATATTCACCTCGGATGGTCTCTTGTGGGATTTACCATCTGATGATCTAATGAATCAGATGGTTTAA

Protein Analysis

358

Amino Acids

39.69

Weight (kDa)

7.66

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 87 8.6e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 102 1.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 94 - 136 4.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 96 - 143 7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56110
fragaria_vesca FvH4_3g41840
malus_domestica MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica Prupe.6G032800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075031
rosa_laevigata RLG00000036519
rosa_multiflora Rmu_sc0006984.1_g000003
rosa_roxburghii Rroxscaffold_1G00006620
rosa_rugosa Rorug05G0435600
rosa_samantha Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana Rw5G045690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 475
AccII CGCG 3 cut(s) 296, 361, 974
AciI CCGC 9 cut(s) 296, 373, 503, 512, 630, 911, 914, 972, 974
AclI AACGTT 1 cut(s) 190
AclWI GGATC 3 cut(s) 446, 871, 1006
AcoI YGGCCR 3 cut(s) 370, 477, 829
AcuI CTGAAG 2 cut(s) 78, 434
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 3 cut(s) 638, 827, 898
AfiI CCNNNNNNNGG 3 cut(s) 475, 617, 815
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 723
AjnI CCWGG 2 cut(s) 367, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AluBI AGCT 7 cut(s) 73, 234, 319, 412, 424, 595, 988
AluI AGCT 7 cut(s) 73, 234, 319, 412, 424, 595, 988
Alw21I GWGCWC 1 cut(s) 905
Alw26I GTCTC 1 cut(s) 1031
Alw44I GTGCAC 1 cut(s) 901
AlwI GGATC 3 cut(s) 446, 871, 1006
AlwNI CAGNNNCTG 1 cut(s) 883
AoxI GGCC 4 cut(s) 370, 477, 829, 925
ApaLI GTGCAC 1 cut(s) 901
ApeKI GCWGC 5 cut(s) 234, 319, 356, 530, 908
AspLEI GCGC 3 cut(s) 114, 361, 582
AspS9I GGNCC 2 cut(s) 916, 925
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 3 cut(s) 509, 759, 1006
AvaII GGWCC 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 905
BanI GGYRCC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 905
BbvI GCAGC 5 cut(s) 221, 306, 368, 542, 920
BccI CCATC 5 cut(s) 336, 742, 1016, 1051, 1060
BceAI ACGGC 3 cut(s) 844, 853, 921
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 2 cut(s) 369, 771
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 2 cut(s) 497, 699
BfmI CTRYAG 2 cut(s) 235, 790
BfoI RGCGCY 1 cut(s) 115
BfrI CTTAAG 1 cut(s) 272
BglII AGATCT 1 cut(s) 221
BisI GCNGC 9 cut(s) 235, 320, 357, 373, 503, 513, 531, 909, 912
BlsI GCNGC 9 cut(s) 236, 321, 358, 374, 504, 514, 532, 910, 913
Bme1390I CCNGG 3 cut(s) 369, 618, 771
Bme18I GGWCC 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 916, 925
BmiI GGNNCC 2 cut(s) 113, 875
BmrFI CCNGG 3 cut(s) 369, 618, 771
BmsI GCATC 2 cut(s) 591, 773
BpmI CTGGAG 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 618
BsaAI YACGTR 2 cut(s) 636, 900
BsaHI GRCGYC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 5 cut(s) 743, 770, 869, 972, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 865, 895
Bsc4I CCNNNNNNNGG 3 cut(s) 475, 617, 815
Bse1I ACTGG 4 cut(s) 113, 404, 763, 928
Bse3DI GCAATG 2 cut(s) 84, 711
BseBI CCWGG 2 cut(s) 369, 771
BseDI CCNNGG 5 cut(s) 743, 770, 869, 972, 1017
BseGI GGATG 5 cut(s) 117, 753, 940, 1001, 1027
BseLI CCNNNNNNNGG 3 cut(s) 475, 617, 815
BseMI GCAATG 2 cut(s) 84, 711
BseNI ACTGG 4 cut(s) 113, 404, 763, 928
BseRI GAGGAG 2 cut(s) 67, 980
BseSI GKGCMC 1 cut(s) 905
BseXI GCAGC 5 cut(s) 221, 306, 368, 542, 920
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 3 cut(s) 296, 361, 974
BshFI GGCC 4 cut(s) 372, 479, 831, 927
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 905
BsiSI CCGG 1 cut(s) 617
BslI CCNNNNNNNGG 3 cut(s) 475, 617, 815
BsmAI GTCTC 1 cut(s) 1031
BsnI GGCC 4 cut(s) 372, 479, 831, 927
Bso31I GGTCTC 1 cut(s) 1031
Bsp1286I GDGCHC 1 cut(s) 905
Bsp143I GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
BspACI CCGC 9 cut(s) 296, 373, 503, 512, 630, 911, 914, 972, 974
BspANI GGCC 4 cut(s) 372, 479, 831, 927
BspFNI CGCG 3 cut(s) 296, 361, 974
BspLI GGNNCC 2 cut(s) 113, 875
BspMAI CTGCAG 2 cut(s) 239, 794
BspPI GGATC 3 cut(s) 446, 871, 1006
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 1031
BsrDI GCAATG 2 cut(s) 84, 711
BsrI ACTGG 4 cut(s) 113, 404, 763, 928
BssECI CCNNGG 5 cut(s) 743, 770, 869, 972, 1017
BssMI GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 743
Bst2UI CCWGG 2 cut(s) 369, 771
Bst4CI ACNGT 2 cut(s) 34, 641
Bst6I CTCTTC 2 cut(s) 185, 294
BstACI GRCGYC 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 2 cut(s) 636, 900
BstC8I GCNNGC 2 cut(s) 239, 650
BstDEI CTNAG 1 cut(s) 989
BstDSI CCRYGG 2 cut(s) 869, 972
BstF5I GGATG 5 cut(s) 117, 753, 940, 1001, 1027
BstFNI CGCG 3 cut(s) 296, 361, 974
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 3 cut(s) 114, 361, 582
BstKTI GATC 6 cut(s) 224, 441, 684, 866, 1001, 1054
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 485, 521, 530
BstNI CCWGG 2 cut(s) 369, 771
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 3 cut(s) 367, 616, 769
BstSFI CTRYAG 2 cut(s) 235, 790
BstSLI GKGCMC 1 cut(s) 905
BstUI CGCG 3 cut(s) 296, 361, 974
BstV1I GCAGC 5 cut(s) 221, 306, 368, 542, 920
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 4 cut(s) 372, 479, 831, 927
BtgI CCRYGG 2 cut(s) 869, 972
BtsCI GGATG 5 cut(s) 117, 753, 940, 1001, 1027
BtsI GCAGTG 2 cut(s) 53, 799
BtsIMutI CAGTG 4 cut(s) 30, 53, 397, 799
Cac8I GCNNGC 2 cut(s) 239, 650
CaiI CAGNNNCTG 1 cut(s) 883
CfoI GCGC 3 cut(s) 114, 361, 582
Cfr13I GGNCC 2 cut(s) 916, 925
Cfr42I CCGCGG 1 cut(s) 975
CseI GACGC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 637, 826, 897
CviAII CATG 6 cut(s) 15, 95, 433, 475, 724, 811
CviQI GTAC 3 cut(s) 637, 826, 897
DdeI CTNAG 1 cut(s) 989
DinI GGCGCC 1 cut(s) 113
DpnI GATC 6 cut(s) 223, 440, 683, 865, 1000, 1053
DpnII GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
EaeI YGGCCR 3 cut(s) 370, 477, 829
Eam1104I CTCTTC 2 cut(s) 185, 294
EarI CTCTTC 2 cut(s) 185, 294
EciI GGCGGA 1 cut(s) 929
Eco130I CCWWGG 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 916
Eco57I CTGAAG 2 cut(s) 78, 434
EcoRII CCWGG 2 cut(s) 367, 769
EcoT14I CCWWGG 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 743
FaeI CATG 6 cut(s) 18, 98, 436, 478, 727, 814
FaiI YATR 7 cut(s) 16, 96, 434, 476, 725, 812, 1010
FatI CATG 6 cut(s) 14, 94, 432, 474, 723, 810
FauI CCCGC 1 cut(s) 967
Fnu4HI GCNGC 9 cut(s) 235, 320, 357, 373, 503, 513, 531, 909, 912
FokI GGATG 5 cut(s) 104, 760, 947, 988, 1034
Fsp4HI GCNGC 9 cut(s) 235, 320, 357, 373, 503, 513, 531, 909, 912
FspBI CTAG 2 cut(s) 497, 699
GlaI GCGC 3 cut(s) 113, 360, 581
GluI GCNGC 9 cut(s) 235, 320, 357, 373, 503, 513, 531, 909, 912
GsuI CTGGAG 1 cut(s) 780
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 4 cut(s) 372, 479, 831, 927
HapII CCGG 1 cut(s) 617
HgaI GACGC 1 cut(s) 302
HhaI GCGC 3 cut(s) 114, 361, 582
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 6 cut(s) 18, 98, 436, 478, 727, 814
Hin6I GCGC 3 cut(s) 112, 359, 580
HinP1I GCGC 3 cut(s) 112, 359, 580
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 5 cut(s) 10, 52, 880, 968, 1060
HpaII CCGG 1 cut(s) 617
HphI GGTGA 3 cut(s) 509, 759, 1006
Hpy166II GTNNAC 5 cut(s) 51, 206, 215, 729, 903
Hpy188I TCNGA 5 cut(s) 9, 292, 1021, 1048, 1065
Hpy188III TCNNGA 4 cut(s) 56, 184, 685, 816
Hpy8I GTNNAC 5 cut(s) 51, 206, 215, 729, 903
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 19, 269, 845
HpyCH4III ACNGT 2 cut(s) 34, 641
HpyCH4IV ACGT 5 cut(s) 190, 244, 635, 839, 899
HpyCH4V TGCA 9 cut(s) 154, 237, 322, 356, 488, 524, 709, 792, 903
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 521, 530
HpyF3I CTNAG 1 cut(s) 989
HpySE526I ACGT 5 cut(s) 190, 244, 635, 839, 899
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 6 cut(s) 18, 98, 436, 478, 727, 814
HspAI GCGC 3 cut(s) 112, 359, 580
KasI GGCGCC 1 cut(s) 111
KspI CCGCGG 1 cut(s) 975
Kzo9I GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 5 cut(s) 564, 600, 761, 873, 985
Lsp1109I GCAGC 5 cut(s) 221, 306, 368, 542, 920
LweI GCATC 2 cut(s) 591, 773
MaeI CTAG 2 cut(s) 497, 699
MaeII ACGT 5 cut(s) 190, 244, 635, 839, 899
MaeIII GTNAC 3 cut(s) 104, 448, 641
MalI GATC 6 cut(s) 223, 440, 683, 865, 1000, 1053
MboI GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
MboII GAAGA 9 cut(s) 71, 74, 172, 186, 311, 427, 430, 668, 965
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 905
MluCI AATT 3 cut(s) 136, 284, 309
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 3 cut(s) 46, 889, 977
MmeI TCCRAC 6 cut(s) 227, 315, 622, 635, 912, 1029
MnlI CCTC 8 cut(s) 88, 125, 482, 575, 742, 940, 958, 1027
MseI TTAA 4 cut(s) 273, 315, 546, 1072
MspA1I CMGCKG 2 cut(s) 911, 974
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 3 cut(s) 369, 618, 771
MvaI CCWGG 2 cut(s) 369, 771
MvnI CGCG 3 cut(s) 296, 361, 974
MwoI GCNNNNNNNGC 3 cut(s) 485, 521, 530
NarI GGCGCC 1 cut(s) 112
NciI CCSGG 1 cut(s) 618
NdeII GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
NlaIII CATG 6 cut(s) 18, 98, 436, 478, 727, 814
NlaIV GGNNCC 2 cut(s) 113, 875
NmeAIII GCCGAG 2 cut(s) 505, 516
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 727
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 672
PfeI GAWTC 2 cut(s) 10, 1060
PflFI GACNNNGTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 475
PkrI GCNGC 9 cut(s) 236, 321, 358, 374, 504, 514, 532, 910, 913
PleI GAGTC 3 cut(s) 46, 888, 976
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 3 cut(s) 46, 888, 976
Ppu21I YACGTR 2 cut(s) 636, 900
PscI ACATGT 1 cut(s) 723
Psp1406I AACGTT 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 367, 769
PspGI CCWGG 2 cut(s) 367, 769
PspN4I GGNNCC 2 cut(s) 113, 875
PspPI GGNCC 2 cut(s) 916, 925
PstI CTGCAG 2 cut(s) 239, 794
PstNI CAGNNNCTG 1 cut(s) 883
PsuI RGATCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 446
RsaI GTAC 3 cut(s) 638, 827, 898
RsaNI GTAC 3 cut(s) 637, 826, 897
SacII CCGCGG 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 273, 315, 546, 1072
SatI GCNGC 9 cut(s) 235, 320, 357, 373, 503, 513, 531, 909, 912
Sau3AI GATC 6 cut(s) 221, 438, 681, 863, 998, 1051
Sau96I GGNCC 2 cut(s) 916, 925
SchI GAGTC 3 cut(s) 46, 889, 977
ScrFI CCNGG 3 cut(s) 369, 618, 771
SduI GDGCHC 1 cut(s) 905
SfaNI GCATC 2 cut(s) 591, 773
SfcI CTRYAG 2 cut(s) 235, 790
SfoI GGCGCC 1 cut(s) 113
Sfr303I CCGCGG 1 cut(s) 975
SgrBI CCGCGG 1 cut(s) 975
SinI GGWCC 1 cut(s) 916
SmlI CTYRAG 2 cut(s) 272, 944
SmoI CTYRAG 2 cut(s) 272, 944
Sse9I AATT 3 cut(s) 136, 284, 309
SsiI CCGC 9 cut(s) 296, 373, 503, 512, 630, 911, 914, 972, 974
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 2 cut(s) 497, 699
StyD4I CCNGG 3 cut(s) 367, 616, 769
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 2 cut(s) 34, 641
TaiI ACGT 5 cut(s) 193, 247, 638, 842, 902
TaqI TCGA 3 cut(s) 441, 585, 675
TasI AATT 3 cut(s) 136, 284, 309
TauI GCSGC 4 cut(s) 375, 505, 515, 914
TfiI GAWTC 2 cut(s) 10, 1060
Tru1I TTAA 4 cut(s) 273, 315, 546, 1072
Tru9I TTAA 4 cut(s) 273, 315, 546, 1072
TscAI CASTG 4 cut(s) 37, 53, 404, 799
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 5 cut(s) 234, 319, 356, 530, 908
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 186, 1073
TspGWI ACGGA 2 cut(s) 294, 1011
TspRI CASTG 4 cut(s) 37, 53, 404, 799
Tth111I GACNNNGTC 1 cut(s) 446
Van91I CCANNNNNTGG 1 cut(s) 475
Vha464I CTTAAG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 901
VpaK11BI GGWCC 1 cut(s) 916
XceI RCATGY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 2 cut(s) 497, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.