MD03G1040500.v1.1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
3207301 .. 3208557
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1040500.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGGTCGGATTCCATGCTGTGAGAAGGACAACGTGAAAAGGGGGCAGTGGACTCCTGAAGAAGATAACAAGCTCTCTTCCTACATTGCCCAACATGGCACTCGTAATTGGCGCCTCATCCCCAAGAACGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGCTACGTTGGACGAACTACCTTCGCCCGGACCTTAAGCACGGCCAATTCTCCGACGCGGAAGAGCAAACAATTGTCAAGTACCACTCCGTTGTTGGCAACCGATGGTCGTTGATTGCAGCGCAACTGCCTGGCCGCACCGACAACGACGTGAAAAATCACTGGAACACCAAGCTGAAGAAGAAGCTATCGGGCATGGGGATCGACCCCGTCACACACAAACCCTTTTCGCACCTCATGGCCGAGATTGCAACCACACTAGCACCGCCGCAGGTGGCTCACCTCGCAGAAGCAGCCCTCGGCTGCTTTAAGGACGAAATGCTCCACCTCCTCATGAAGAAGCGCATCGACTTCCACCAACATACCAATCCAACGCCGGGAAACAGCACTGCCACGTACATTAACAGCCAACAGGAAGAAAAGCTCGACACCGTCAAAAAGATCAAGATTGGTTTATCTAGGGCAATGCAAGAACAACCGGACATGTTAACCTCAAACAAACCTTGGATGGACACTATTGGAGCAACATCTGCGAACTTCACAGGGAACTGCAGTGATTTCCCCTTGCCCATGTCTGGATTTCAGTACGGCCATTCCACGTTTGGGAACGAAGGCGATGGATCGCCGTGGAGCCAGAGTCTGTGTACCGGAAGTACGTGCACGGGGGCGGCGGACCAGCAGGGCCAGTTGGCTGACAAACTGGAGGTGGAAGAAAACGGAGAGGAGTCCGAGGGTAGAAAGGAGCTGAGAAACGGATCATCCAACATATTCAACTCGGATAGTCTCTTGTGGGATTTACCATCTGAAGATCTAATGAATCAGATGGTTTAA

Protein Analysis

330

Amino Acids

36.75

Weight (kDa)

6.6

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 2.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 110 1.5e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56110
fragaria_vesca FvH4_3g41840
malus_domestica MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica Prupe.6G032800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075031
rosa_laevigata RLG00000036519
rosa_multiflora Rmu_sc0006984.1_g000003
rosa_roxburghii Rroxscaffold_1G00006620
rosa_rugosa Rorug05G0435600
rosa_samantha Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana Rw5G045690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 421
AccB1I GGYRCC 1 cut(s) 111
AccII CGCG 1 cut(s) 218
AciI CCGC 6 cut(s) 218, 295, 425, 428, 827, 830
AclWI GGATC 3 cut(s) 368, 787, 922
AcoI YGGCCR 4 cut(s) 202, 292, 399, 748
AcuI CTGAAG 3 cut(s) 78, 356, 984
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 5 cut(s) 242, 557, 746, 805, 814
AfiI CCNNNNNNNGG 4 cut(s) 187, 536, 734, 762
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 642
AgsI TTSAA 1 cut(s) 931
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 6 cut(s) 73, 156, 334, 346, 583, 904
AluI AGCT 6 cut(s) 73, 156, 334, 346, 583, 904
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 1 cut(s) 947
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 3 cut(s) 368, 787, 922
AlwNI CAGNNNCTG 1 cut(s) 799
AoxI GGCC 5 cut(s) 202, 292, 399, 748, 841
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 4 cut(s) 156, 278, 452, 462
AspLEI GCGC 3 cut(s) 114, 283, 504
AspS9I GGNCC 3 cut(s) 190, 832, 841
AsuC2I CCSGG 2 cut(s) 188, 537
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 2 cut(s) 190, 832
BaeGI GKGCMC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 4 cut(s) 143, 290, 449, 464
BccI CCATC 5 cut(s) 258, 661, 770, 967, 976
BceAI ACGGC 3 cut(s) 217, 763, 769
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 2 cut(s) 188, 537
BcoDI GTCTC 1 cut(s) 947
BfaI CTAG 2 cut(s) 419, 618
BfmI CTRYAG 2 cut(s) 157, 709
BfoI RGCGCY 1 cut(s) 115
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 421
BglII AGATCT 1 cut(s) 967
BisI GCNGC 7 cut(s) 157, 279, 295, 428, 453, 463, 828
BlsI GCNGC 7 cut(s) 158, 280, 296, 429, 454, 464, 829
Bme1390I CCNGG 3 cut(s) 188, 291, 537
Bme18I GGWCC 2 cut(s) 190, 832
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 190, 832, 841
BmiI GGNNCC 2 cut(s) 113, 791
BmrFI CCNGG 3 cut(s) 188, 291, 537
BmsI GCATC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 881
BpuMI CCSGG 2 cut(s) 188, 537
BsaAI YACGTR 2 cut(s) 555, 816
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 4 cut(s) 457, 662, 785, 888
BsaWI WCCGGW 2 cut(s) 637, 806
BsaXI ACNNNNNCTCC 2 cut(s) 781, 811
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 536, 734, 762
Bse1I ACTGG 3 cut(s) 326, 844, 864
Bse3DI GCAATG 2 cut(s) 84, 630
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 457, 662, 785, 888
BseGI GGATG 3 cut(s) 117, 672, 917
BseLI CCNNNNNNNGG 4 cut(s) 187, 536, 734, 762
BseMI GCAATG 2 cut(s) 84, 630
BseMII CTCAG 1 cut(s) 896
BseNI ACTGG 3 cut(s) 326, 844, 864
BseRI GAGGAG 2 cut(s) 479, 896
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 4 cut(s) 143, 290, 449, 464
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 5 cut(s) 204, 294, 401, 750, 843
BshNI GGYRCC 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 4 cut(s) 188, 536, 638, 807
BslI CCNNNNNNNGG 4 cut(s) 187, 536, 734, 762
BsmAI GTCTC 1 cut(s) 947
BsnI GGCC 5 cut(s) 204, 294, 401, 750, 843
Bsp1286I GDGCHC 1 cut(s) 821
Bsp143I GATC 5 cut(s) 360, 600, 779, 914, 967
BspACI CCGC 6 cut(s) 218, 295, 425, 428, 827, 830
BspANI GGCC 5 cut(s) 204, 294, 401, 750, 843
BspCNI CTCAG 1 cut(s) 897
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 113, 791
BspMAI CTGCAG 2 cut(s) 161, 713
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 3 cut(s) 368, 787, 922
BspQI GCTCTTC 2 cut(s) 146, 216
BspT107I GGYRCC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 84, 630
BsrI ACTGG 3 cut(s) 326, 844, 864
BssECI CCNNGG 4 cut(s) 457, 662, 785, 888
BssMI GATC 5 cut(s) 360, 600, 779, 914, 967
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 662
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 3 cut(s) 82, 146, 216
BstACI GRCGYC 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 689
BstBAI YACGTR 2 cut(s) 555, 816
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 905
BstDSI CCRYGG 1 cut(s) 785
BstF5I GGATG 3 cut(s) 117, 672, 917
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 3 cut(s) 114, 283, 504
BstKTI GATC 5 cut(s) 363, 603, 782, 917, 970
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 5 cut(s) 360, 600, 779, 914, 967
BstMWI GCNNNNNNNGC 4 cut(s) 407, 443, 452, 689
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 186, 289, 535
BstSFI CTRYAG 2 cut(s) 157, 709
BstSLI GKGCMC 1 cut(s) 821
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 143, 290, 449, 464
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
BsuRI GGCC 5 cut(s) 204, 294, 401, 750, 843
BtgI CCRYGG 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 3 cut(s) 117, 672, 917
BtsI GCAGTG 3 cut(s) 53, 546, 718
BtsIMutI CAGTG 4 cut(s) 53, 319, 546, 718
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 799
CciI TCATGA 1 cut(s) 492
CfoI GCGC 3 cut(s) 114, 283, 504
Cfr13I GGNCC 3 cut(s) 190, 832, 841
CseI GACGC 1 cut(s) 224
Csp6I GTAC 5 cut(s) 241, 556, 745, 804, 813
CviAII CATG 7 cut(s) 15, 95, 355, 397, 493, 643, 730
CviQI GTAC 5 cut(s) 241, 556, 745, 804, 813
DdeI CTNAG 1 cut(s) 905
DinI GGCGCC 1 cut(s) 113
DpnI GATC 5 cut(s) 362, 602, 781, 916, 969
DpnII GATC 5 cut(s) 360, 600, 779, 914, 967
EaeI YGGCCR 4 cut(s) 202, 292, 399, 748
Eam1104I CTCTTC 3 cut(s) 82, 146, 216
EarI CTCTTC 3 cut(s) 82, 146, 216
EciI GGCGGA 1 cut(s) 845
Eco130I CCWWGG 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 190, 832
Eco57I CTGAAG 3 cut(s) 78, 356, 984
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 662
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 7 cut(s) 18, 98, 358, 400, 496, 646, 733
FaiI YATR 9 cut(s) 16, 96, 356, 398, 494, 522, 644, 731, 926
FatI CATG 7 cut(s) 14, 94, 354, 396, 492, 642, 729
Fnu4HI GCNGC 7 cut(s) 157, 279, 295, 428, 453, 463, 828
FokI GGATG 3 cut(s) 104, 679, 904
Fsp4HI GCNGC 7 cut(s) 157, 279, 295, 428, 453, 463, 828
FspBI CTAG 2 cut(s) 419, 618
GlaI GCGC 3 cut(s) 113, 282, 503
GluI GCNGC 7 cut(s) 157, 279, 295, 428, 453, 463, 828
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 5 cut(s) 204, 294, 401, 750, 843
HapII CCGG 4 cut(s) 188, 536, 638, 807
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 114, 283, 504
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 7 cut(s) 18, 98, 358, 400, 496, 646, 733
Hin6I GCGC 3 cut(s) 112, 281, 502
HinP1I GCGC 3 cut(s) 112, 281, 502
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 5 cut(s) 10, 52, 796, 884, 976
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 4 cut(s) 188, 536, 638, 807
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 5 cut(s) 51, 137, 648, 804, 819
Hpy188I TCNGA 6 cut(s) 9, 214, 889, 937, 964, 981
Hpy188III TCNNGA 4 cut(s) 56, 493, 604, 735
Hpy8I GTNNAC 5 cut(s) 51, 137, 648, 804, 819
Hpy99I CGWCG 2 cut(s) 218, 311
HpyAV CCTTC 3 cut(s) 19, 191, 764
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 6 cut(s) 33, 166, 309, 554, 758, 815
HpyCH4V TGCA 6 cut(s) 159, 278, 410, 628, 711, 819
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 443, 452, 689
HpyF3I CTNAG 1 cut(s) 905
HpySE526I ACGT 6 cut(s) 33, 166, 309, 554, 758, 815
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 7 cut(s) 18, 98, 358, 400, 496, 646, 733
HspAI GCGC 3 cut(s) 112, 281, 502
KasI GGCGCC 1 cut(s) 111
KspAI GTTAAC 1 cut(s) 648
Kzo9I GATC 5 cut(s) 360, 600, 779, 914, 967
LguI GCTCTTC 2 cut(s) 146, 216
LmnI GCTCC 4 cut(s) 486, 680, 789, 901
Lsp1109I GCAGC 4 cut(s) 143, 290, 449, 464
LweI GCATC 1 cut(s) 513
MaeI CTAG 2 cut(s) 419, 618
MaeII ACGT 6 cut(s) 33, 166, 309, 554, 758, 815
MaeIII GTNAC 1 cut(s) 370
MalI GATC 5 cut(s) 362, 602, 781, 916, 969
MboI GATC 5 cut(s) 360, 600, 779, 914, 967
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 3 cut(s) 106, 206, 231
Mly113I GGCGCC 1 cut(s) 112
MlyI GAGTC 3 cut(s) 46, 805, 893
MmeI TCCRAC 4 cut(s) 149, 237, 554, 945
MseI TTAA 5 cut(s) 195, 468, 561, 647, 988
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 4 cut(s) 188, 536, 638, 807
MspR9I CCNGG 3 cut(s) 188, 291, 537
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 4 cut(s) 407, 443, 452, 689
NarI GGCGCC 1 cut(s) 112
NciI CCSGG 2 cut(s) 188, 537
NdeII GATC 5 cut(s) 360, 600, 779, 914, 967
NlaIII CATG 7 cut(s) 18, 98, 358, 400, 496, 646, 733
NlaIV GGNNCC 2 cut(s) 113, 791
NmeAIII GCCGAG 2 cut(s) 427, 438
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 646
PagI TCATGA 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 421
PciI ACATGT 1 cut(s) 642
PciSI GCTCTTC 2 cut(s) 146, 216
PfeI GAWTC 2 cut(s) 10, 976
PflFI GACNNNGTC 2 cut(s) 368, 590
PkrI GCNGC 7 cut(s) 158, 280, 296, 429, 454, 464, 829
PleI GAGTC 3 cut(s) 46, 804, 892
PluTI GGCGCC 1 cut(s) 115
PpsI GAGTC 3 cut(s) 46, 804, 892
Ppu21I YACGTR 2 cut(s) 555, 816
PscI ACATGT 1 cut(s) 642
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 113, 791
PspPI GGNCC 3 cut(s) 190, 832, 841
PstI CTGCAG 2 cut(s) 161, 713
PstNI CAGNNNCTG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 967
PsyI GACNNNGTC 2 cut(s) 368, 590
RsaI GTAC 5 cut(s) 242, 557, 746, 805, 814
RsaNI GTAC 5 cut(s) 241, 556, 745, 804, 813
SapI GCTCTTC 2 cut(s) 146, 216
SaqAI TTAA 5 cut(s) 195, 468, 561, 647, 988
SatI GCNGC 7 cut(s) 157, 279, 295, 428, 453, 463, 828
Sau3AI GATC 5 cut(s) 360, 600, 779, 914, 967
Sau96I GGNCC 3 cut(s) 190, 832, 841
SchI GAGTC 3 cut(s) 46, 805, 893
ScrFI CCNGG 3 cut(s) 188, 291, 537
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 2 cut(s) 157, 709
SfoI GGCGCC 1 cut(s) 113
SinI GGWCC 2 cut(s) 190, 832
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 106, 206, 231
SsiI CCGC 6 cut(s) 218, 295, 425, 428, 827, 830
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 2 cut(s) 419, 618
StyD4I CCNGG 3 cut(s) 186, 289, 535
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 6 cut(s) 36, 169, 312, 557, 761, 818
TaqI TCGA 3 cut(s) 363, 507, 585
TasI AATT 3 cut(s) 106, 206, 231
TauI GCSGC 3 cut(s) 297, 430, 830
TfiI GAWTC 2 cut(s) 10, 976
Tru1I TTAA 5 cut(s) 195, 468, 561, 647, 988
Tru9I TTAA 5 cut(s) 195, 468, 561, 647, 988
TscAI CASTG 4 cut(s) 53, 326, 553, 718
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 4 cut(s) 156, 278, 452, 462
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 509, 989
TspGWI ACGGA 3 cut(s) 238, 891, 927
TspRI CASTG 4 cut(s) 53, 326, 553, 718
Tth111I GACNNNGTC 2 cut(s) 368, 590
Vha464I CTTAAG 1 cut(s) 194
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 2 cut(s) 190, 832
XceI RCATGY 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 758
XspI CTAG 2 cut(s) 419, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.