Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Forward (+)

2515622 .. 2517117

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTCGGATTCCATGCTGTGAGAAGGACAATGTGAAAAGGGGGCAGTGGACACCTGAAGAAGATAACAAGCTATCTTCATACATTGCCCAACATGGCACTCGTAATTGGCGGCTCATCCCCAAGAATGCCGGTCTACAAAGATGCGGGAAGAGCTGCAGGCTGCGGTGGACGAACTACCTCCGCCCTGACCTTAAGCATGGCCAGTTCTCAGACGCTGAAGAGCAAACCATTGTCAAACTTCACTCTGTTGTTGGTAACCGATGGTCGATAATTGCAGCACAACTGCCTGGTCGCACCGACAATGATGTGAAAAACCATTGGAACACCAAGCTGAAGAAGAAGCTATCGGGCATGGGGATAGACCCTGTCACCCACAAACCCTTTTCCCACCTCATGGCCGAGATTGCAACCACACTGGCACCGCCACAGGTGGCTCACCTTGCAGAAGCAGCACTTGGCTGCTTCAAGGATGAAATGCTCCACCTCCTCACGAAGAGGCGCATTGACTTCCAGTTCCAACATTCTAATGCAACACCAGGGAACAGCACAGCCACTTACATTAACAGTAAGCAGGAAGAAAAAGATGACACTATTGAGAAGATCAAGATTGGTTTATCCAGGGCTATGCAAGAACCAGACATGTTAACCTCAAACAAACCTTGGGACCCTACTGGAGCAACATCTGCAAACTTTACAGGGAACTGCAGTGCTTTTCCCTTGCCCATGTCCGGATTTCAGTATGGCCCTTCGACTTTCGGGAATGAAGGGGATGGATCACCGTGGAGCCAAAGTATGTGTACTGGAAGCACGTGCACAGGGGGAGACCAGCAGGGCCAGTTGCATGACAAACTAGGGGAACAAAATGGAGAGGAATCCGAGGGTGGAAAAGAGTTGAGAAATGGATCCAACATATTCAACTCGGATAGCATCTTGTGGGATTTACCATCTGATGATCTAATGAATCCTTTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.03

Weight (kDa)

6.56

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	731
AciI	CCGC	5 cut(s)	112, 147, 166, 184, 425
AclWI	GGATC	3 cut(s)	784, 900, 913
AcoI	YGGCCR	2 cut(s)	202, 399
AcuI	CTGAAG	3 cut(s)	78, 240, 356
AcvI	CACGTG	1 cut(s)	813
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	2 cut(s)	397, 731
AflII	CTTAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	469, 919
AjnI	CCWGG	3 cut(s)	289, 538, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	4 cut(s)	73, 156, 334, 346
AluI	AGCT	4 cut(s)	73, 156, 334, 346
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	1 cut(s)	819
Alw44I	GTGCAC	1 cut(s)	814
AlwI	GGATC	3 cut(s)	784, 900, 913
AlwNI	CAGNNNCTG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	731
AoxI	GGCC	4 cut(s)	202, 399, 745, 835
ApaLI	GTGCAC	1 cut(s)	814
ApeKI	GCWGC	5 cut(s)	156, 163, 278, 452, 462
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	667, 746, 835
AsuHPI	GGTGA	3 cut(s)	364, 431, 771
AvaII	GGWCC	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	818
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	421
BbrPI	CACGTG	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	5 cut(s)	143, 150, 290, 449, 464
BccI	CCATC	3 cut(s)	258, 767, 955
BciT130I	CCWGG	3 cut(s)	291, 540, 622
BcoDI	GTCTC	1 cut(s)	819
BfaI	CTAG	1 cut(s)	854
BfmI	CTRYAG	2 cut(s)	157, 706
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	6 cut(s)	113, 157, 164, 279, 453, 463
BlsI	GCNGC	6 cut(s)	114, 158, 165, 280, 454, 464
Bme1390I	CCNGG	3 cut(s)	291, 540, 622
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	3 cut(s)	667, 746, 835
BmiI	GGNNCC	5 cut(s)	423, 668, 669, 788, 907
BmrFI	CCNGG	3 cut(s)	291, 540, 622
BmsI	GCATC	2 cut(s)	134, 939
BpmI	CTGGAG	1 cut(s)	696
BsaAI	YACGTR	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	5 cut(s)	539, 621, 662, 782, 879
BsaWI	WCCGGW	1 cut(s)	731
BsaXI	ACNNNNNCTCC	2 cut(s)	778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 731
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	6 cut(s)	205, 423, 514, 679, 808, 838
Bse3DI	GCAATG	1 cut(s)	84
BseAI	TCCGGA	1 cut(s)	731
BseBI	CCWGG	3 cut(s)	291, 540, 622
BseDI	CCNNGG	5 cut(s)	539, 621, 662, 782, 879
BseGI	GGATG	3 cut(s)	117, 478, 778
BseLI	CCNNNNNNNGG	2 cut(s)	397, 731
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	6 cut(s)	205, 423, 514, 679, 808, 838
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	5 cut(s)	143, 150, 290, 449, 464
BshFI	GGCC	4 cut(s)	204, 401, 747, 837
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	132, 732
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	397, 731
BsmAI	GTCTC	1 cut(s)	819
BsmFI	GGGAC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	204, 401, 747, 837
Bso31I	GGTCTC	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp13I	TCCGGA	1 cut(s)	731
Bsp143I	GATC	4 cut(s)	603, 776, 905, 955
BspACI	CCGC	5 cut(s)	112, 147, 166, 184, 425
BspANI	GGCC	4 cut(s)	204, 401, 747, 837
BspCNI	CTCAG	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	731
BspLI	GGNNCC	5 cut(s)	423, 668, 669, 788, 907
BspMAI	CTGCAG	2 cut(s)	161, 710
BspPI	GGATC	3 cut(s)	784, 900, 913
BspQI	GCTCTTC	2 cut(s)	146, 216
BspT107I	GGYRCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	819
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	6 cut(s)	205, 423, 514, 679, 808, 838
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	5 cut(s)	539, 621, 662, 782, 879
BssMI	GATC	4 cut(s)	603, 776, 905, 955
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	3 cut(s)	291, 540, 622
Bst4CI	ACNGT	2 cut(s)	569, 783
Bst6I	CTCTTC	3 cut(s)	146, 216, 491
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	813
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	782
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	117, 478, 778
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	4 cut(s)	606, 779, 908, 958
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	4 cut(s)	603, 776, 905, 955
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 407, 443, 452, 686
BstNI	CCWGG	3 cut(s)	291, 540, 622
BstNSI	RCATGY	1 cut(s)	646
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	289, 538, 620
BstSFI	CTRYAG	2 cut(s)	157, 706
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	5 cut(s)	143, 150, 290, 449, 464
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BsuRI	GGCC	4 cut(s)	204, 401, 747, 837
BtgI	CCRYGG	1 cut(s)	782
BtsCI	GGATG	3 cut(s)	117, 478, 778
BtsI	GCAGTG	2 cut(s)	53, 715
BtsIMutI	CAGTG	3 cut(s)	53, 416, 715
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	667, 746, 835
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	8 cut(s)	15, 95, 200, 355, 397, 643, 727, 845
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	4 cut(s)	605, 778, 907, 957
DpnII	GATC	4 cut(s)	603, 776, 905, 955
EaeI	YGGCCR	2 cut(s)	202, 399
Eam1104I	CTCTTC	3 cut(s)	146, 216, 491
EarI	CTCTTC	3 cut(s)	146, 216, 491
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	667
Eco57I	CTGAAG	3 cut(s)	78, 240, 356
Eco72I	CACGTG	1 cut(s)	813
Eco91I	GGTNACC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	667
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	289, 538, 620
EcoT14I	CCWWGG	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	662
FaeI	CATG	8 cut(s)	18, 98, 203, 358, 400, 646, 730, 848
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	8 cut(s)	14, 94, 199, 354, 396, 642, 726, 844
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	6 cut(s)	113, 157, 164, 279, 453, 463
FokI	GGATG	3 cut(s)	104, 485, 785
Fsp4HI	GCNGC	6 cut(s)	113, 157, 164, 279, 453, 463
FspBI	CTAG	1 cut(s)	854
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	6 cut(s)	113, 157, 164, 279, 453, 463
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	204, 401, 747, 837
HapII	CCGG	2 cut(s)	132, 732
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	8 cut(s)	18, 98, 203, 358, 400, 646, 730, 848
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	3 cut(s)	10, 875, 964
HpaI	GTTAAC	1 cut(s)	648
HpaII	CCGG	2 cut(s)	132, 732
HphI	GGTGA	3 cut(s)	364, 431, 771
Hpy166II	GTNNAC	6 cut(s)	51, 137, 171, 648, 801, 816
Hpy188I	TCNGA	5 cut(s)	9, 214, 880, 925, 952
Hpy188III	TCNNGA	4 cut(s)	493, 607, 732, 760
Hpy8I	GTNNAC	6 cut(s)	51, 137, 171, 648, 801, 816
HpyAV	CCTTC	3 cut(s)	19, 759, 761
HpyCH4III	ACNGT	2 cut(s)	569, 783
HpyCH4IV	ACGT	1 cut(s)	812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 407, 443, 452, 686
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	812
Hsp92II	CATG	8 cut(s)	18, 98, 203, 358, 400, 646, 730, 848
HspAI	GCGC	1 cut(s)	502
KflI	GGGWCCC	1 cut(s)	667
Kpn2I	TCCGGA	1 cut(s)	731
KspAI	GTTAAC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	603, 776, 905, 955
LguI	GCTCTTC	2 cut(s)	146, 216
LmnI	GCTCC	3 cut(s)	486, 677, 786
Lsp1109I	GCAGC	5 cut(s)	143, 150, 290, 449, 464
LweI	GCATC	2 cut(s)	134, 939
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	2 cut(s)	257, 370
MalI	GATC	4 cut(s)	605, 778, 907, 957
MboI	GATC	4 cut(s)	603, 776, 905, 955
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	1 cut(s)	818
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	2 cut(s)	106, 273
MluNI	TGGCCA	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	544, 933
MnlI	CCTC	8 cut(s)	191, 404, 492, 497, 500, 661, 865, 874
Mox20I	TGGCCA	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	3 cut(s)	195, 564, 647
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	2 cut(s)	132, 732
MspR9I	CCNGG	3 cut(s)	291, 540, 622
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	291, 540, 622
MwoI	GCNNNNNNNGC	5 cut(s)	153, 407, 443, 452, 686
NdeII	GATC	4 cut(s)	603, 776, 905, 955
NlaIII	CATG	8 cut(s)	18, 98, 203, 358, 400, 646, 730, 848
NlaIV	GGNNCC	5 cut(s)	423, 668, 669, 788, 907
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	646
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	2 cut(s)	146, 216
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	10, 875, 964
PflFI	GACNNNGTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	6 cut(s)	114, 158, 165, 280, 454, 464
PmaCI	CACGTG	1 cut(s)	813
PmlI	CACGTG	1 cut(s)	813
Ppu21I	YACGTR	1 cut(s)	813
PpuMI	RGGWCCY	1 cut(s)	667
PscI	ACATGT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	3 cut(s)	289, 538, 620
PspCI	CACGTG	1 cut(s)	813
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	289, 538, 620
PspN4I	GGNNCC	5 cut(s)	423, 668, 669, 788, 907
PspPI	GGNCC	3 cut(s)	667, 746, 835
PspPPI	RGGWCCY	1 cut(s)	667
PstI	CTGCAG	2 cut(s)	161, 710
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	1 cut(s)	528
SapI	GCTCTTC	2 cut(s)	146, 216
SaqAI	TTAA	3 cut(s)	195, 564, 647
SatI	GCNGC	6 cut(s)	113, 157, 164, 279, 453, 463
Sau3AI	GATC	4 cut(s)	603, 776, 905, 955
Sau96I	GGNCC	3 cut(s)	667, 746, 835
ScrFI	CCNGG	3 cut(s)	291, 540, 622
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	2 cut(s)	134, 939
SfcI	CTRYAG	2 cut(s)	157, 706
SinI	GGWCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	106, 273
SsiI	CCGC	5 cut(s)	112, 147, 166, 184, 425
SspMI	CTAG	1 cut(s)	854
StyD4I	CCNGG	3 cut(s)	289, 538, 620
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	2 cut(s)	569, 783
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	2 cut(s)	269, 752
TasI	AATT	2 cut(s)	106, 273
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	10, 875, 964
Tru1I	TTAA	3 cut(s)	195, 564, 647
Tru9I	TTAA	3 cut(s)	195, 564, 647
TscAI	CASTG	3 cut(s)	53, 423, 715
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	5 cut(s)	156, 163, 278, 452, 462
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	69, 489, 780, 977
TspRI	CASTG	3 cut(s)	53, 423, 715
Tth111I	GACNNNGTC	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	814
VpaK11BI	GGWCC	1 cut(s)	667
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.