Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Forward (+)

22719191 .. 22720664

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAAGAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATCCCTAAGAATGCTGGGTTGCAAAGATGTGGGAAGAGTTGTAGGCTGCGATGGACAAACTATCTGCGTCCGGATTTGAAACATGGCCAGTTCTCGGAGGCTGAAGAACATATCATTGTCAAGTTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGGACAGACAACGATGTGAAAAATTATTGGAACACGAAGCTGAAGAAGAAGTTGTCAGGAATGGGAATAGATCCGGTGACCCACAAGCCTTTCTCGCATCTAATGGCAGAGATCACCACTACACTTAATCCTCCTCAGGTTTCTCACCTAGCCGAAGCTGCCCTCGGCTGTTTCAAGGACGAGATGCTTCACTTGCTCACCAAGAAACGTGTTGACCTAAACCAAATCAACTTTTCAAACCATAACCCTAACCCAAACAACTTTCACGAGATTGCTGATAATGAAGCTGGTAAGATAAAGATGGATGGTTTGGACCATGGGAATGGGATAATGAAGTTATGGGACATGGGTAATGGATTCTCATATGGATCCTCTTCGTCTTCGTTTGGGAATGAAGAAAGAAATGATGGATCAGCGTCTCCTGCCGTTGCAGCTTGGAGGGGTCACGGAGGAATACGTACCGCGGTAGCTGAAACCGCGGCAGCGGAGGAGGAGGAGAGAAGGAAGCTGAAGGGAGAAGTGGTTGATCAAGAGGAGATTGGATCTGAAGGAGGAAGAGGAGATGGAATGACGATGATGAGGAACCATCATCATCATCAACATGTGTTTAATGTGGATAATGTCTTGTGGGATTTACAAGCTGATGATCTCATCAATCATATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

35.98

Weight (kDa)

6.81

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	1.6e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	7.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	758, 773
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	6 cut(s)	278, 756, 758, 771, 773, 779
AclWI	GGATC	5 cut(s)	359, 657, 670, 712, 844
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	5 cut(s)	78, 240, 356, 824, 861
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	2 cut(s)	100, 754
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	502, 895
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	196, 469, 531
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	7 cut(s)	334, 452, 581, 728, 764, 802, 935
AluI	AGCT	7 cut(s)	334, 452, 581, 728, 764, 802, 935
Alw26I	GTCTC	2 cut(s)	119, 717
AlwI	GGATC	5 cut(s)	359, 657, 670, 712, 844
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	163, 452, 725, 776
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	4 cut(s)	382, 400, 431, 484
AvaII	GGWCC	1 cut(s)	607
AxyI	CCTNAGG	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	2 cut(s)	69, 666
BbvI	GCAGC	4 cut(s)	150, 439, 737, 788
BccI	CCATC	6 cut(s)	162, 589, 593, 695, 851, 888
BceAI	ACGGC	1 cut(s)	704
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	119, 717
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	6 cut(s)	164, 279, 453, 726, 774, 777
BlsI	GCNGC	6 cut(s)	165, 280, 454, 727, 775, 778
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	2 cut(s)	664, 878
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	400, 468
BpiI	GAAGAC	2 cut(s)	69, 666
BsaAI	YACGTR	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	4 cut(s)	457, 610, 756, 771
BsaWI	WCCGGW	3 cut(s)	187, 261, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	429
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	457, 610, 756, 771
BseGI	GGATG	2 cut(s)	117, 604
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	6 cut(s)	417, 797, 800, 803, 842, 867
BseXI	GCAGC	4 cut(s)	150, 439, 737, 788
BseYI	CCCAGC	1 cut(s)	131
Bsh1236I	CGCG	2 cut(s)	758, 773
BshFI	GGCC	1 cut(s)	204
BshTI	ACCGGT	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	188, 262, 368
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	119, 717
BsmBI	CGTCTC	2 cut(s)	119, 717
BsmFI	GGGAC	1 cut(s)	650
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	6 cut(s)	278, 756, 758, 771, 773, 779
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	758, 773
BspLI	GGNNCC	2 cut(s)	664, 878
BspPI	GGATC	5 cut(s)	359, 657, 670, 712, 844
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	4 cut(s)	457, 610, 756, 771
BssMI	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	610
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	4 cut(s)	32, 146, 673, 844
BstACI	GRCGYC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	752
BstDEI	CTNAG	2 cut(s)	123, 429
BstDSI	CCRYGG	3 cut(s)	610, 756, 771
BstEII	GGTNACC	2 cut(s)	257, 370
BstF5I	GGATG	2 cut(s)	117, 604
BstFNI	CGCG	2 cut(s)	758, 773
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	7 cut(s)	367, 408, 665, 707, 823, 839, 943
BstMAI	GTCTC	2 cut(s)	119, 717
BstMBI	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
BstMWI	GCNNNNNNNGC	6 cut(s)	388, 452, 487, 716, 725, 770
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	899
BstPI	GGTNACC	2 cut(s)	257, 370
BstSCI	CCNGG	1 cut(s)	289
BstSNI	TACGTA	1 cut(s)	752
BstUI	CGCG	2 cut(s)	758, 773
BstV1I	GCAGC	4 cut(s)	150, 439, 737, 788
BstV2I	GAAGAC	2 cut(s)	69, 666
BstX2I	RGATCY	3 cut(s)	364, 662, 836
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	3 cut(s)	364, 662, 836
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	3 cut(s)	610, 756, 771
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	117, 604
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	607
Cfr42I	CCGCGG	2 cut(s)	759, 774
CseI	GACGC	3 cut(s)	101, 173, 699
Csp6I	GTAC	2 cut(s)	99, 753
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	6 cut(s)	15, 95, 200, 611, 640, 896
CviQI	GTAC	2 cut(s)	99, 753
DdeI	CTNAG	2 cut(s)	123, 429
DpnI	GATC	7 cut(s)	366, 407, 664, 706, 822, 838, 942
DpnII	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	32, 146, 673, 844
EarI	CTCTTC	4 cut(s)	32, 146, 673, 844
Eco105I	TACGTA	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	607
Eco57I	CTGAAG	5 cut(s)	78, 240, 356, 824, 861
Eco81I	CCTNAGG	1 cut(s)	429
Eco91I	GGTNACC	2 cut(s)	257, 370
EcoO65I	GGTNACC	2 cut(s)	257, 370
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	2 cut(s)	119, 717
FaeI	CATG	6 cut(s)	18, 98, 203, 614, 643, 899
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	6 cut(s)	14, 94, 199, 610, 639, 895
FauNDI	CATATG	2 cut(s)	658, 954
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	6 cut(s)	164, 279, 453, 726, 774, 777
FokI	GGATG	2 cut(s)	104, 611
Fsp4HI	GCNGC	6 cut(s)	164, 279, 453, 726, 774, 777
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	6 cut(s)	164, 279, 453, 726, 774, 777
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	3 cut(s)	188, 262, 368
HgaI	GACGC	3 cut(s)	101, 173, 699
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	6 cut(s)	18, 98, 203, 614, 643, 899
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	3 cut(s)	10, 52, 651
HpaII	CCGG	3 cut(s)	188, 262, 368
HphI	GGTGA	4 cut(s)	382, 400, 431, 484
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	4 cut(s)	9, 214, 297, 841
Hpy188III	TCNNGA	5 cut(s)	56, 188, 351, 560, 824
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	3 cut(s)	789, 799, 836
HpyCH4IV	ACGT	2 cut(s)	502, 751
HpyCH4V	TGCA	2 cut(s)	139, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	388, 452, 487, 716, 725, 770
HpyF3I	CTNAG	2 cut(s)	123, 429
HpySE526I	ACGT	2 cut(s)	502, 751
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	6 cut(s)	18, 98, 203, 614, 643, 899
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	820
KspI	CCGCGG	2 cut(s)	759, 774
Kzo9I	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
Lsp1109I	GCAGC	4 cut(s)	150, 439, 737, 788
LweI	GCATC	2 cut(s)	400, 468
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	502, 751
MaeIII	GTNAC	3 cut(s)	257, 370, 737
MalI	GATC	7 cut(s)	366, 407, 664, 706, 822, 838, 942
MboI	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
MflI	RGATCY	3 cut(s)	364, 662, 836
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	3 cut(s)	71, 106, 316
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	275
Mox20I	TGGCCA	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	420, 903
MslI	CAYNNNNRTG	2 cut(s)	615, 894
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	3 cut(s)	758, 773, 779
MspI	CCGG	3 cut(s)	188, 262, 368
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	2 cut(s)	758, 773
MwoI	GCNNNNNNNGC	6 cut(s)	388, 452, 487, 716, 725, 770
NcoI	CCATGG	1 cut(s)	610
NdeI	CATATG	2 cut(s)	658, 954
NdeII	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
NlaIII	CATG	6 cut(s)	18, 98, 203, 614, 643, 899
NlaIV	GGNNCC	2 cut(s)	664, 878
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	370, 737
NspI	RCATGY	1 cut(s)	899
PciI	ACATGT	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	10, 651
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	165, 280, 454, 727, 775, 778
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	752
PscI	ACATGT	1 cut(s)	895
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	2 cut(s)	257, 370
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	664, 878
PspPI	GGNCC	1 cut(s)	607
PsuI	RGATCY	3 cut(s)	364, 662, 836
RsaI	GTAC	2 cut(s)	100, 754
RsaNI	GTAC	2 cut(s)	99, 753
RseI	CAYNNNNRTG	2 cut(s)	615, 894
SacII	CCGCGG	2 cut(s)	759, 774
SaqAI	TTAA	2 cut(s)	420, 903
SatI	GCNGC	6 cut(s)	164, 279, 453, 726, 774, 777
Sau3AI	GATC	7 cut(s)	364, 405, 662, 704, 820, 836, 940
Sau96I	GGNCC	1 cut(s)	607
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	400, 468
Sfr303I	CCGCGG	2 cut(s)	759, 774
SgrBI	CCGCGG	2 cut(s)	759, 774
SinI	GGWCC	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	615, 894
SnaBI	TACGTA	1 cut(s)	752
Sse9I	AATT	3 cut(s)	71, 106, 316
SsiI	CCGC	6 cut(s)	278, 756, 758, 771, 773, 779
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	610
TaiI	ACGT	2 cut(s)	505, 754
TasI	AATT	3 cut(s)	71, 106, 316
TauI	GCSGC	2 cut(s)	281, 776
TfiI	GAWTC	2 cut(s)	10, 651
Tru1I	TTAA	2 cut(s)	420, 903
Tru9I	TTAA	2 cut(s)	420, 903
TseFI	GTSAC	2 cut(s)	370, 737
TseI	GCWGC	4 cut(s)	163, 452, 725, 776
Tsp45I	GTSAC	2 cut(s)	370, 737
TspDTI	ATGAA	3 cut(s)	591, 641, 702
TspGWI	ACGGA	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	607
XceI	RCATGY	1 cut(s)	899
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.