Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016069

Physical Location & Seq

Genomic Coordinates Forward (+)

8611610 .. 8613075

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTCGGATTCCATGCTGTGAGAAGGACAATGTGAAAAGGGGACAGTGGACTCCTGAAGAAGATAACAAGCTCTCTTCCTACATTGCCCAACACGGTACTCGCAATTGGCGTCTCATCCCAAAGAATGCCGGTTTACAAAGATGTGGGAAGAGTTGTAGGCTGCGTTGGACCAACTACCTTCGACCTGACCTCAAGCACGGGCAGTTCTCAGAGGCGGAAGAGCAAACCATTGTCAAGCTCCACTCTGTTGTTGGCAACCGATGGTCCTTAATTGCTGCACAACTTCCTGGTCGCACTGACAATGATGTGAAAAACCACTGGAATACAAAGCTGAAGAAGAAGCTGTCGGGTATGGGGATAGATCCAGTCACCCACAAACCCTTTTCCCACCTCATGGCCGAGATTGCAACCACACTGGCACCACCGAACGTGGCTAACCTTGCAGAAGCAGCACTCGGTTGTTTTAAGGATGAAATGCTCCACCTCCTCACAAAGAAGCCGATCGACTTCCAGTTCCAACATTCTAACACGACACCCGGGAACCGCACAGCCACTTATATCAACAGTAAGCAGGAAGAAAAAGATGAGACGATTGAGAAGATCAAGATTGGTTTATCAAGGGCTATGCAAGAACCAGACACGTTACATTCACAAAAATCTTGGGATCCTACCGGAGCAACATCAGCAAACCTTACAGGTAACTGCAGTGCTTTTCCCTTGCATTCTATATCTGGATTTCACACATGCACAGGGGCAGACCAGCAAGGTCATTTGCATGACAAACTTGATGAAGAAATTGGAGAGGAGTCTGAGGGTGGAAAAGAGTTGAGAAACGGATCCAACATATTCAACTCAGATAGCATCTTGTGGGATTTACCATCTGACGATCTAATGAATCCAATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

33.87

Weight (kDa)

6.67

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	5.5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56110
fragaria_vesca	FvH4_3g41840
malus_domestica	MD03G1040500.v1.1 MD11G1041900.v1.1
prunus_persica	Prupe.6G032800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0075031
rosa_laevigata	RLG00000036519
rosa_multiflora	Rmu_sc0006984.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006620
rosa_rugosa	Rorug05G0435600
rosa_samantha	Rh5AG492900 Rh5BG514200 Rh5CG537800 Rh5DG526500
rosa_wichuraiana	Rw5G045690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	2 cut(s)	218, 547
AclWI	GGATC	5 cut(s)	359, 662, 675, 834, 847
AcoI	YGGCCR	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	78, 356
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	397
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	1 cut(s)	853
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	73, 241, 334, 346
AluI	AGCT	4 cut(s)	73, 241, 334, 346
Alw26I	GTCTC	2 cut(s)	119, 584
AlwI	GGATC	5 cut(s)	359, 662, 675, 834, 847
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	163, 278, 452
AspS9I	GGNCC	2 cut(s)	171, 267
AsuC2I	CCSGG	2 cut(s)	540, 541
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	171, 267
BamHI	GGATCC	2 cut(s)	667, 839
BanI	GGYRCC	1 cut(s)	421
BbvI	GCAGC	3 cut(s)	150, 265, 464
BccI	CCATC	2 cut(s)	258, 889
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	540, 541
BcoDI	GTCTC	2 cut(s)	119, 584
BfmI	CTRYAG	1 cut(s)	706
BisI	GCNGC	3 cut(s)	164, 279, 453
BlsI	GCNGC	3 cut(s)	165, 280, 454
Bme1390I	CCNGG	3 cut(s)	291, 540, 541
Bme18I	GGWCC	2 cut(s)	171, 267
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	171, 267
BmiI	GGNNCC	4 cut(s)	423, 545, 669, 841
BmrFI	CCNGG	3 cut(s)	291, 540, 541
BmsI	GCATC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	540, 541
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	674
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	326, 368, 423, 514
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	2 cut(s)	117, 478
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	225, 804, 870
BseNI	ACTGG	4 cut(s)	326, 368, 423, 514
BseRI	GAGGAG	2 cut(s)	479, 821
BseXI	GCAGC	3 cut(s)	150, 265, 464
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	3 cut(s)	132, 540, 675
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	119, 584
BsmBI	CGTCTC	2 cut(s)	119, 584
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	133, 724
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
BspACI	CCGC	2 cut(s)	218, 547
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	224, 805, 869
BspLI	GGNNCC	4 cut(s)	423, 545, 669, 841
BspMAI	CTGCAG	1 cut(s)	710
BspPI	GGATC	5 cut(s)	359, 662, 675, 834, 847
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	326, 368, 423, 514
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
BssNI	GRCGYC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	48, 98, 569
Bst6I	CTCTTC	3 cut(s)	82, 146, 216
BstACI	GRCGYC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	211, 813, 856
BstF5I	GGATG	2 cut(s)	117, 478
BstKTI	GATC	6 cut(s)	367, 507, 606, 670, 842, 892
BstMAI	GTCTC	2 cut(s)	119, 584
BstMBI	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	3 cut(s)	289, 538, 539
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	3 cut(s)	150, 265, 464
BstX2I	RGATCY	3 cut(s)	364, 667, 839
BstYI	RGATCY	3 cut(s)	364, 667, 839
BsuRI	GGCC	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	117, 478
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	5 cut(s)	53, 297, 319, 416, 715
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	171, 267
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	15, 397, 747, 779
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	211, 813, 856
DpnI	GATC	6 cut(s)	366, 506, 605, 669, 841, 891
DpnII	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	3 cut(s)	82, 146, 216
EarI	CTCTTC	3 cut(s)	82, 146, 216
EciI	GGCGGA	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	171, 267
Eco57I	CTGAAG	2 cut(s)	78, 356
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	119, 584
FaeI	CATG	4 cut(s)	18, 400, 750, 782
FaiI	YATR	9 cut(s)	16, 356, 398, 561, 629, 731, 748, 780, 848
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	14, 396, 746, 778
Fnu4HI	GCNGC	3 cut(s)	164, 279, 453
FokI	GGATG	2 cut(s)	104, 485
Fsp4HI	GCNGC	3 cut(s)	164, 279, 453
GluI	GCNGC	3 cut(s)	164, 279, 453
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	3 cut(s)	132, 540, 675
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	18, 400, 750, 782
HinfI	GANTC	4 cut(s)	10, 52, 809, 898
HpaII	CCGG	3 cut(s)	132, 540, 675
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	51, 137
Hpy188I	TCNGA	5 cut(s)	9, 214, 814, 859, 886
Hpy188III	TCNNGA	3 cut(s)	56, 607, 735
Hpy8I	GTNNAC	2 cut(s)	51, 137
HpyAV	CCTTC	2 cut(s)	19, 191
HpyCH4III	ACNGT	3 cut(s)	48, 98, 569
HpyCH4IV	ACGT	2 cut(s)	432, 644
HpyCH4V	TGCA	8 cut(s)	281, 410, 446, 631, 708, 724, 750, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
HpyF3I	CTNAG	3 cut(s)	211, 813, 856
HpySE526I	ACGT	2 cut(s)	432, 644
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	18, 400, 750, 782
Kzo9I	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	246, 486, 677
Lsp1109I	GCAGC	3 cut(s)	150, 265, 464
LweI	GCATC	1 cut(s)	873
MaeII	ACGT	2 cut(s)	432, 644
MaeIII	GTNAC	3 cut(s)	370, 645, 701
MalI	GATC	6 cut(s)	366, 506, 605, 669, 841, 891
MboI	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	3 cut(s)	364, 667, 839
MluCI	AATT	3 cut(s)	106, 273, 798
MlyI	GAGTC	2 cut(s)	46, 818
MmeI	TCCRAC	3 cut(s)	149, 544, 867
MnlI	CCTC	7 cut(s)	203, 208, 404, 497, 500, 799, 808
MseI	TTAA	2 cut(s)	272, 468
MslI	CAYNNNNRTG	1 cut(s)	777
MspI	CCGG	3 cut(s)	132, 540, 675
MspR9I	CCNGG	3 cut(s)	291, 540, 541
MunI	CAATTG	1 cut(s)	106
Mva1269I	GAATGC	2 cut(s)	133, 724
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	407, 443, 452, 686
NciI	CCSGG	2 cut(s)	540, 541
NdeII	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
NlaIII	CATG	4 cut(s)	18, 400, 750, 782
NlaIV	GGNNCC	4 cut(s)	423, 545, 669, 841
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	133, 724
PfeI	GAWTC	2 cut(s)	10, 898
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	165, 280, 454
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	2 cut(s)	46, 817
PpsI	GAGTC	2 cut(s)	46, 817
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	423, 545, 669, 841
PspPI	GGNCC	2 cut(s)	171, 267
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	3 cut(s)	364, 667, 839
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	272, 468
SatI	GCNGC	3 cut(s)	164, 279, 453
Sau3AI	GATC	6 cut(s)	364, 504, 603, 667, 839, 889
Sau96I	GGNCC	2 cut(s)	171, 267
SchI	GAGTC	2 cut(s)	46, 818
ScrFI	CCNGG	3 cut(s)	291, 540, 541
SfaNI	GCATC	1 cut(s)	873
SfcI	CTRYAG	1 cut(s)	706
SinI	GGWCC	2 cut(s)	171, 267
SmaI	CCCGGG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	106, 273, 798
SsiI	CCGC	2 cut(s)	218, 547
StyD4I	CCNGG	3 cut(s)	289, 538, 539
TaaI	ACNGT	3 cut(s)	48, 98, 569
TaiI	ACGT	2 cut(s)	435, 647
TaqI	TCGA	2 cut(s)	184, 507
TasI	AATT	3 cut(s)	106, 273, 798
TfiI	GAWTC	2 cut(s)	10, 898
Tru1I	TTAA	2 cut(s)	272, 468
Tru9I	TTAA	2 cut(s)	272, 468
TscAI	CASTG	5 cut(s)	53, 304, 326, 423, 715
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	163, 278, 452
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	489, 807, 911
TspGWI	ACGGA	1 cut(s)	852
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	5 cut(s)	53, 304, 326, 423, 715
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	2 cut(s)	171, 267
XceI	RCATGY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.