Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

12054684 .. 12056168

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACAAATTGGTTAGCCTGCCATGCTCATCAGACCTGAAGATGGCTTTGTTCTCGTCCGGGCCTCGCAGGCCGCCGTCATACTCTTCCTCCACAGTTTCCCTCCCCATCCGCACCCTCGGATCCGCAAGGTCCTATGCTAAGCGCCGTGAAGTCAACTGCACAAAACCTTCTCCAGCATCCCCGAAACTGAGGGCCACACAGAATCTCATTAAAGGGCTCAAGTCTGAGATCACAACTGTTGAGGAGGATTTAGAAAGATTTCGTGCAGTAGAGGGTTCAGACGAGTTTCCTTTTGAAATAGTCACTCGTTTAGGATATGGCCTAAAAACCACGGAGACTGAACTCAAAAGAGAACTTGATGATGAAATCATCCGAGTGTCAGTTGAGTATGATGATGAGGAAGATGATGATGATGAGGAAGATGATGATGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGAAGAAGATGATGATGATGATGAAGAAGATGATGATGATGATGAAGATGATGATGATGATGATGATGAAGATCATGAAGAAGATGAAGATGAAGAAGATGATGATGATGATGATGAAGATGATGAAGAAGAAGATGAAGAAGAAGATTCTGGCATTCCAATGAAAGTGTGCATCTTCCAAAGAAGTACTGGACAGCAGCTGGAGTTGGATGTCACTGCTTTCCATGAGGAGATTTGCGTCGACCACTTTTCAATCAAGAAACCGGAGCATTCAGACCGTGATTTCACCAAAACTGGCGGCGAGTACTTGGCTAACTTACAGAAGGAATTAGTTAAATACCTTGAGGTTAAAGGGGTCACCCCCAACACAATTGAATTATGGAAGGCCAACTTGAAGAACAAAAAAGGCAAAGAGTCCCTGTTGAATATGAAAAACTTCAAGGCTTTTATGGAACAAAGCACCGTTTTCACCGGTGGTAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

327

Amino Acids

37.49

Weight (kDa)

4.05

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	74 - 315	1.3e-06	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	738
AciI	CCGC	4 cut(s)	74, 112, 126, 795
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	685, 803
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	968
AgsI	TTSAA	6 cut(s)	299, 750, 872, 892, 922, 937
AluBI	AGCT	1 cut(s)	697
AluI	AGCT	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	117, 130
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	5 cut(s)	62, 71, 195, 322, 882
ApeKI	GCWGC	1 cut(s)	694
AsiGI	ACCGGT	1 cut(s)	968
Asp700I	GAANNNNTTC	2 cut(s)	261, 932
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	62, 132, 195
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	775, 847, 958
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	37, 116
BceAI	ACGGC	2 cut(s)	61, 132
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	74, 695, 796
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	75, 696, 797
BmcAI	AGTACT	2 cut(s)	685, 803
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	62, 132, 195
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	188, 678
BpmI	CTGGAG	2 cut(s)	159, 719
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	206, 860
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	118, 333
BsaWI	WCCGGW	2 cut(s)	760, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	968
Bse1I	ACTGG	2 cut(s)	691, 796
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	118, 333
BseGI	GGATG	4 cut(s)	108, 179, 372, 712
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	182, 219
BseNI	ACTGG	2 cut(s)	691, 796
BseRI	GAGGAG	2 cut(s)	260, 740
BseXI	GCAGC	1 cut(s)	706
BsgI	GTGCAG	2 cut(s)	145, 288
BshFI	GGCC	5 cut(s)	64, 73, 197, 324, 884
BshTI	ACCGGT	1 cut(s)	968
BsiSI	CCGG	3 cut(s)	60, 761, 969
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	898
BsmI	GAATGC	2 cut(s)	651, 766
BsnI	GGCC	5 cut(s)	64, 73, 197, 324, 884
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	122, 231, 568
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	74, 112, 126, 795
BspANI	GGCC	5 cut(s)	64, 73, 197, 324, 884
BspCNI	CTCAG	2 cut(s)	183, 220
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	117, 130
BsrFI	RCCGGY	1 cut(s)	968
BsrI	ACTGG	2 cut(s)	691, 796
BssAI	RCCGGY	1 cut(s)	968
BssECI	CCNNGG	2 cut(s)	118, 333
BssMI	GATC	3 cut(s)	122, 231, 568
Bst4CI	ACNGT	4 cut(s)	97, 241, 776, 961
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	20, 71
BstDEI	CTNAG	3 cut(s)	141, 191, 228
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	853
BstF5I	GGATG	4 cut(s)	108, 179, 372, 712
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	125, 234, 571
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	3 cut(s)	122, 231, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 70
BstPI	GGTNACC	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	5 cut(s)	64, 73, 197, 324, 884
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	108, 179, 372, 712
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	2 cut(s)	20, 71
CaiI	CAGNNNCTG	1 cut(s)	697
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	968
Cfr13I	GGNCC	3 cut(s)	62, 132, 195
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	684, 802
CspAI	ACCGGT	1 cut(s)	968
CviAII	CATG	3 cut(s)	24, 572, 722
CviQI	GTAC	2 cut(s)	684, 802
DdeI	CTNAG	3 cut(s)	141, 191, 228
DpnI	GATC	3 cut(s)	124, 233, 570
DpnII	GATC	3 cut(s)	122, 231, 568
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	853
EcoO109I	RGGNCCY	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	3 cut(s)	27, 575, 725
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	3 cut(s)	23, 571, 721
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	74, 695, 796
FokI	GGATG	4 cut(s)	95, 166, 359, 719
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	74, 695, 796
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	74, 695, 796
GsuI	CTGGAG	2 cut(s)	159, 719
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	5 cut(s)	64, 73, 197, 324, 884
HapII	CCGG	3 cut(s)	60, 761, 969
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	27, 575, 725
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	157, 739
HindII	GTYRAC	2 cut(s)	157, 739
HinfI	GANTC	3 cut(s)	205, 644, 911
HpaII	CCGG	3 cut(s)	60, 761, 969
HphI	GGTGA	3 cut(s)	775, 847, 958
Hpy166II	GTNNAC	2 cut(s)	157, 739
Hpy188I	TCNGA	6 cut(s)	34, 122, 229, 283, 377, 772
Hpy188III	TCNNGA	2 cut(s)	572, 754
Hpy8I	GTNNAC	2 cut(s)	157, 739
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	3 cut(s)	180, 814, 874
HpyCH4III	ACNGT	4 cut(s)	97, 241, 776, 961
HpyCH4V	TGCA	3 cut(s)	162, 269, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 70
HpyF3I	CTNAG	3 cut(s)	141, 191, 228
Hsp92II	CATG	3 cut(s)	27, 575, 725
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	122, 231, 568
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	2 cut(s)	188, 678
MaeIII	GTNAC	3 cut(s)	304, 709, 853
MalI	GATC	3 cut(s)	124, 233, 570
MboI	GATC	3 cut(s)	122, 231, 568
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	8, 824, 867, 872
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	684
MroXI	GAANNNNTTC	2 cut(s)	261, 932
MseI	TTAA	3 cut(s)	213, 831, 846
MslI	CAYNNNNRTG	2 cut(s)	377, 656
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	3 cut(s)	60, 761, 969
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	2 cut(s)	651, 766
MwoI	GCNNNNNNNGC	2 cut(s)	24, 70
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	122, 231, 568
NlaIII	CATG	3 cut(s)	27, 575, 725
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	304, 709, 853
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	2 cut(s)	651, 766
PdmI	GAANNNNTTC	2 cut(s)	261, 932
PfeI	GAWTC	2 cut(s)	205, 644
PinAI	ACCGGT	1 cut(s)	968
PkrI	GCNGC	3 cut(s)	75, 696, 797
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	62, 132, 195
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	2 cut(s)	685, 803
RsaNI	GTAC	2 cut(s)	684, 802
RseI	CAYNNNNRTG	2 cut(s)	377, 656
SalI	GTCGAC	1 cut(s)	737
SaqAI	TTAA	3 cut(s)	213, 831, 846
SatI	GCNGC	3 cut(s)	74, 695, 796
Sau3AI	GATC	3 cut(s)	122, 231, 568
Sau96I	GGNCC	3 cut(s)	62, 132, 195
ScaI	AGTACT	2 cut(s)	685, 803
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	39, 134, 172, 699, 840, 846
SfaNI	GCATC	2 cut(s)	188, 678
SfiI	GGCCNNNNNGGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	968
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	377, 656
SmlI	CTYRAG	2 cut(s)	221, 839
SmoI	CTYRAG	2 cut(s)	221, 839
Sse9I	AATT	4 cut(s)	8, 824, 867, 872
SsiI	CCGC	4 cut(s)	74, 112, 126, 795
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	4 cut(s)	97, 241, 776, 961
TaqI	TCGA	1 cut(s)	738
TasI	AATT	4 cut(s)	8, 824, 867, 872
TatI	WGTACW	2 cut(s)	683, 801
TauI	GCSGC	2 cut(s)	76, 798
TfiI	GAWTC	2 cut(s)	205, 644
Tru1I	TTAA	3 cut(s)	213, 831, 846
Tru9I	TTAA	3 cut(s)	213, 831, 846
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	3 cut(s)	304, 709, 853
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	3 cut(s)	304, 709, 853
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	738
XmnI	GAANNNNTTC	2 cut(s)	261, 932
ZrmI	AGTACT	2 cut(s)	685, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.