Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383613.1

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

588 .. 1180

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

gatgatgatgatgatgatgatgatgaagaagatgatgatgatgaagaagatgatgatgatgatgatgaagatgatgatgaagaagaagatgatgatgatgaagatcatgaagaagatgaagatgaagaagatgatgatgatgaagatgatgaagaagaagatgaagaagaagattctggcattccaatgaaagtgtgcatcttccaaagaagtactggacagcagttggagttggatgtcactgctttccatgaggagatttgcgtcgaccacttttcaatcaagaaaccggagcattcagaccgtgatttcaccaaaactggcggcgagtacttggctaacttacagaaggaattagttaaataccttgaggttaaaggggtcacccccaacacaattgaattatggaaggccaacttgaagaacaaaaaaggcaaagagtccctgttgaatatgaaaaacttcaaggcttttatggaacaaagcaccgttttcaccggtggtaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.76

Weight (kDa)

4.05

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	214, 332
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	279, 401, 421, 451, 466
AoxI	GGCC	1 cut(s)	411
AsiGI	ACCGGT	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	304, 376, 487
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BmcAI	AGTACT	2 cut(s)	214, 332
BmsI	GCATC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	102
BsaWI	WCCGGW	2 cut(s)	289, 497
Bse118I	RCCGGY	1 cut(s)	497
Bse1I	ACTGG	2 cut(s)	220, 325
Bse8I	GATNNNNATC	1 cut(s)	102
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	102
BseNI	ACTGG	2 cut(s)	220, 325
BseRI	GAGGAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	290, 498
BslFI	GGGAC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	2 cut(s)	180, 295
BsnI	GGCC	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	220, 325
BssAI	RCCGGY	1 cut(s)	497
BssMI	GATC	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	305, 490
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
CciI	TCATGA	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	497
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	213, 331
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	2 cut(s)	107, 251
CviJI	RGCY	3 cut(s)	338, 413, 470
CviKI_1	RGCY	3 cut(s)	338, 413, 470
CviQI	GTAC	2 cut(s)	213, 331
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
FaeI	CATG	2 cut(s)	110, 254
FaiI	YATR	5 cut(s)	108, 252, 406, 455, 476
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	2 cut(s)	106, 250
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	290, 498
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	110, 254
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	173, 440
HpaII	CCGG	2 cut(s)	290, 498
HphI	GGTGA	3 cut(s)	304, 376, 487
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	107, 283
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	343, 403
HpyCH4III	ACNGT	2 cut(s)	305, 490
HpyCH4V	TGCA	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	110, 254
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	162, 201, 303, 306, 458
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	238, 382
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	396
MluCI	AATT	3 cut(s)	353, 396, 401
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	207, 213
MnlI	CCTC	2 cut(s)	247, 364
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	2 cut(s)	360, 375
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	2 cut(s)	290, 498
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	2 cut(s)	180, 295
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	110, 254
NmuCI	GTSAC	2 cut(s)	238, 382
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	2 cut(s)	180, 295
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	382
RsaI	GTAC	2 cut(s)	214, 332
RsaNI	GTAC	2 cut(s)	213, 331
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	360, 375
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	1 cut(s)	103
ScaI	AGTACT	2 cut(s)	214, 332
SchI	GAGTC	1 cut(s)	449
SetI	ASST	2 cut(s)	369, 375
SfaNI	GCATC	1 cut(s)	207
SgrAI	CRCCGGYG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	353, 396, 401
SsiI	CCGC	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	305, 490
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	353, 396, 401
TatI	WGTACW	2 cut(s)	212, 330
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	360, 375
Tru9I	TTAA	2 cut(s)	360, 375
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	238, 382
Tsp45I	GTSAC	2 cut(s)	238, 382
TspRI	CASTG	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	461
ZrmI	AGTACT	2 cut(s)	214, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.