Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

8345567 .. 8346946

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAAAATGGTAGCGCAGCCATGCTCAACAGATCTGAAGATGGCTTTGTTCTCTTCCGGGTCTCGCAAGCTGCCGGCATACTCTTCCTCCATAGTTTTTCTCCCCGTGTGCTCCATCAGATCCGCAAGGGTGTGTGCTAAGCGCCGTGAAGTCAACAAAACAAATCCATCTCCGGCATCCCCGAAACTGAAGGCCACACAGGATCTCATTAATGGGCTCAAGTGTGAGATCGCAAATGTTCAAGAGGACTTGGAAAGATTTCATGCAGTGGAGGGTTCAGACGAGTTTCCTTTTGAAATAATCACTCGTTCAGGATATGGCCTAAAAACCAAGGAGACTTATCTCCAAAGAGAACTTGATGATGAAGTCATTCGAGTGTCAGCTGAGTACGAAACTGATGAAGATGAAGATGAAGACGAGGAAGATGATGATGAAGACGATGAAGTAGAAGAAGATGATGACGATGATGAATTCGATGATGAAGTAGAAGAAGACGATGAAGAAGAAGACTCTGGCATTGCAATGAAAGTGAACATTTTCCAAAAAAGTACTGGAAAACAACTGAAGTTGGATGTAACTTCTTTCCCTGATGAGATTCGCGTCGACCACTTTTCAATCAAGAAACCGGAGCAATATTACCTTGATGTCACCAAAACCGGCGGCAAGTACTTGGCTAACTTACAGAAGGAATTGGTCAAATATCTTGAGGTGAAAGGGGTCACGCCCAAGACAATTGAATTATGGAAGGCCAGTTTGAAGAACAAAATAGGAAGAGAGTCCGTGGTGAATATGAAGGGCTTTAGGGCTTTTATGGAAAAAAGCAATGTTTTCACCAGTGCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.11

Weight (kDa)

4.52

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	86 - 246	2.3e-14	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	603
AciI	CCGC	2 cut(s)	126, 663
AclWI	GGATC	2 cut(s)	117, 213
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	3 cut(s)	59, 212, 587
AfaI	GTAC	3 cut(s)	392, 553, 671
AgsI	TTSAA	5 cut(s)	245, 299, 618, 740, 760
AluBI	AGCT	2 cut(s)	73, 386
AluI	AGCT	2 cut(s)	73, 386
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	69, 332
AlwI	GGATC	2 cut(s)	117, 213
AoxI	GGCC	3 cut(s)	195, 322, 750
ApeKI	GCWGC	2 cut(s)	19, 73
ApoI	RAATTY	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	3 cut(s)	261, 372, 539
AspLEI	GCGC	2 cut(s)	19, 147
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	643, 724, 799, 826
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	4 cut(s)	423, 444, 501, 516
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	31, 60
BccI	CCATC	3 cut(s)	37, 125, 178
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	69, 332
BfaI	CTAG	1 cut(s)	847
BfoI	RGCGCY	1 cut(s)	148
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	3 cut(s)	20, 74, 664
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	21, 75, 665
BmcAI	AGTACT	2 cut(s)	553, 671
Bme1390I	CCNGG	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	4 cut(s)	423, 444, 501, 516
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	206, 728
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	333, 783
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	2 cut(s)	76, 659
Bse1I	ACTGG	3 cut(s)	559, 753, 837
Bse3DI	GCAATG	3 cut(s)	519, 531, 832
BseDI	CCNNGG	2 cut(s)	333, 783
BseGI	GGATG	2 cut(s)	179, 580
BseMI	GCAATG	3 cut(s)	519, 531, 832
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	559, 753, 837
BseXI	GCAGC	2 cut(s)	31, 60
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	197, 324, 752
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	5 cut(s)	60, 77, 176, 629, 660
BsmAI	GTCTC	2 cut(s)	69, 332
BsnI	GGCC	3 cut(s)	197, 324, 752
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	116, 222
Bsp143I	GATC	4 cut(s)	34, 122, 205, 231
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	126, 663
BspANI	GGCC	3 cut(s)	197, 324, 752
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	603
BspPI	GGATC	2 cut(s)	117, 213
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	3 cut(s)	519, 531, 832
BsrFI	RCCGGY	2 cut(s)	76, 659
BsrI	ACTGG	3 cut(s)	559, 753, 837
BssAI	RCCGGY	2 cut(s)	76, 659
BssECI	CCNNGG	2 cut(s)	333, 783
BssMI	GATC	4 cut(s)	34, 122, 205, 231
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	3 cut(s)	61, 91, 769
BstC8I	GCNNGC	2 cut(s)	71, 78
BstDEI	CTNAG	2 cut(s)	141, 387
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	179, 580
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	2 cut(s)	19, 147
BstKTI	GATC	4 cut(s)	37, 125, 208, 234
BstMAI	GTCTC	2 cut(s)	69, 332
BstMBI	GATC	4 cut(s)	34, 122, 205, 231
BstSCI	CCNGG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	31, 60
BstV2I	GAAGAC	4 cut(s)	423, 444, 501, 516
BstX2I	RGATCY	3 cut(s)	34, 122, 205
BstYI	RGATCY	3 cut(s)	34, 122, 205
BsuRI	GGCC	3 cut(s)	197, 324, 752
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	179, 580
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 844
Cac8I	GCNNGC	2 cut(s)	71, 78
CfoI	GCGC	2 cut(s)	19, 147
Cfr10I	RCCGGY	2 cut(s)	76, 659
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	391, 552, 670
CviAII	CATG	2 cut(s)	24, 266
CviQI	GTAC	3 cut(s)	391, 552, 670
DdeI	CTNAG	2 cut(s)	141, 387
DpnI	GATC	4 cut(s)	36, 124, 207, 233
DpnII	GATC	4 cut(s)	34, 122, 205, 231
Eam1104I	CTCTTC	3 cut(s)	61, 91, 769
EarI	CTCTTC	3 cut(s)	61, 91, 769
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	69
Eco57I	CTGAAG	3 cut(s)	59, 212, 587
EcoRI	GAATTC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	27, 269
FaiI	YATR	8 cut(s)	25, 82, 95, 267, 321, 745, 794, 815
FatI	CATG	2 cut(s)	23, 265
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	20, 74, 664
FokI	GGATG	2 cut(s)	166, 587
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	20, 74, 664
FspBI	CTAG	1 cut(s)	847
GlaI	GCGC	2 cut(s)	18, 146
GluI	GCNGC	3 cut(s)	20, 74, 664
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	197, 324, 752
HapII	CCGG	5 cut(s)	60, 77, 176, 629, 660
HgaI	GACGC	1 cut(s)	592
HhaI	GCGC	2 cut(s)	19, 147
Hin1II	CATG	2 cut(s)	27, 269
Hin6I	GCGC	2 cut(s)	17, 145
HinP1I	GCGC	2 cut(s)	17, 145
HincII	GTYRAC	2 cut(s)	157, 607
HindII	GTYRAC	2 cut(s)	157, 607
HinfI	GANTC	3 cut(s)	512, 598, 779
HpaII	CCGG	5 cut(s)	60, 77, 176, 629, 660
HphI	GGTGA	4 cut(s)	643, 724, 799, 826
Hpy166II	GTNNAC	3 cut(s)	157, 535, 607
Hpy188I	TCNGA	3 cut(s)	39, 122, 283
Hpy188III	TCNNGA	4 cut(s)	245, 315, 622, 707
Hpy8I	GTNNAC	3 cut(s)	157, 535, 607
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	4 cut(s)	187, 682, 742, 790
HpyCH4V	TGCA	2 cut(s)	269, 524
HpyF3I	CTNAG	2 cut(s)	141, 387
Hsp92II	CATG	2 cut(s)	27, 269
HspAI	GCGC	2 cut(s)	17, 145
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	4 cut(s)	34, 122, 205, 231
LmnI	GCTCC	2 cut(s)	119, 631
Lsp1109I	GCAGC	2 cut(s)	31, 60
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	577, 649, 721
MalI	GATC	4 cut(s)	36, 124, 207, 233
MboI	GATC	4 cut(s)	34, 122, 205, 231
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	3 cut(s)	34, 122, 205
MhlI	GDGCHC	2 cut(s)	116, 222
MluCI	AATT	4 cut(s)	473, 692, 735, 740
MlyI	GAGTC	2 cut(s)	506, 788
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	5 cut(s)	100, 241, 268, 415, 703
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	3 cut(s)	261, 372, 539
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	377, 524
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	5 cut(s)	60, 77, 176, 629, 660
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	603
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	34, 122, 205, 231
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	27, 269
NmuCI	GTSAC	2 cut(s)	649, 721
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	3 cut(s)	261, 372, 539
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	21, 75, 665
PleI	GAGTC	2 cut(s)	506, 787
PpsI	GAGTC	2 cut(s)	506, 787
PshBI	ATTAAT	1 cut(s)	213
PsuI	RGATCY	3 cut(s)	34, 122, 205
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	392, 553, 671
RsaNI	GTAC	3 cut(s)	391, 552, 670
RseI	CAYNNNNRTG	2 cut(s)	377, 524
SalI	GTCGAC	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	20, 74, 664
Sau3AI	GATC	4 cut(s)	34, 122, 205, 231
ScaI	AGTACT	2 cut(s)	553, 671
SchI	GAGTC	2 cut(s)	506, 788
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	116, 222
SetI	ASST	4 cut(s)	75, 388, 645, 714
SfaNI	GCATC	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	377, 524
SmlI	CTYRAG	2 cut(s)	221, 707
SmoI	CTYRAG	2 cut(s)	221, 707
Sse9I	AATT	4 cut(s)	473, 692, 735, 740
SsiI	CCGC	2 cut(s)	126, 663
SspI	AATATT	1 cut(s)	638
SspMI	CTAG	1 cut(s)	847
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	333
TaqI	TCGA	3 cut(s)	376, 477, 606
TasI	AATT	4 cut(s)	473, 692, 735, 740
TatI	WGTACW	2 cut(s)	551, 669
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	276, 844
TseFI	GTSAC	2 cut(s)	649, 721
TseI	GCWGC	2 cut(s)	19, 73
Tsp45I	GTSAC	2 cut(s)	649, 721
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	2 cut(s)	276, 844
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	3 cut(s)	261, 372, 539
XspI	CTAG	1 cut(s)	847
ZrmI	AGTACT	2 cut(s)	553, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.