Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

6431835 .. 6436142

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3204 bp

ATGGCTGATAATCGAAATGGAAATAGTAAGCCTACAAAGGCAGCTGGAGCAGGAAATAATCCCTATTCCATTGATTTGAATGTCTTCAGTCAGAGATTGAAGTCCCTCTATTCGCACTGGAATGAGCAGCCTGAGTTGTGGGATTCTAGTGACGTTATTGCGATTGCAACACCGCCACAATCAGATGAAATCCGGTACCTTAAGTCTTCAACATTGCAGATGTGGTTGGTTGGGTATGATGTTCCGGATACGATAATGGTGTTCATGAAGAAGCAGATTCATTTCTTGGGTAGCCAGAAGAAGGTGTCTTTTTTCCAAGGTGTGAAGAAGTCTGCCAAAGAGGCTGTGGGTGTTGATGTTGTGACGCATGTGAAGGCAAAGAGTGATGATGGCAGTGCTCTGATGGATACTATTTTGGGTGTAATTCGTGCCCAACCAAAGGCTGATGGCCGTGATACTGTTGTTGTAGGAAGGATAGCAAGGGAGGATCCTGAGGGGAATCTTTTGAAATTGTGGTTTGAGAAGCTGAAGAGTGCAACTGTTCAGCTTGGTGATGTAACAAATGGGTTGTCTGACTTGTTTGCTGTCAAGGAGAAAGAGGAACTTGGTAATGTCAAGAAGGCCGCTTACTTAAATACTCTTGTTATGCAGAAAATGGTGGCGAAGCTTGAGAGTGTTATTGATGATGAGAAGAAGGTCACTCACTCTTCTTTGATGGATGAGACAGAGAAACTTATACTGGAACCCTCTAAAGTTGGGCTGAAGCTCAATCCTCAGAATGTTGATATCTGTTACCCTCCAATCTTTCAGAGTGGAGGAAAGTATGATCTCAGACCTGGTGCTGCCAGCAATGATGAGCTTCTTTATTATGATTCTGCAAGTGTGATCATATGTGCTATTGGATCCCGTTATCACAATTACTGCTCGAATGCTGCCAGGACTTTTTTGATTGATGCTAATCCCCTTCAGAGTAAGGCATATGAGGTTCTTCTCAAGGCCCATGCTGCAGCCATTAGTGAGTTGAAGCCTGACAATAAAGCCAGTGCTGCATATCTAGCAGCACTGGCTGTTGTAGAGAAGGATGCTCCTGAACTATTACCTAATTTGACAAAATCTACGGGGACAGGCATTGGTATTGAGTTCCGTGAATCTGGGTTGAATCTTAATGCAAAAAATGATCGGGTGGTGAAAGCTGGCATGGTCTTTAATGTGTCACTCGGTTTTCATAACTTGCAGAGTGGTATCAGTGATCCAAAGCACCAGAACTTCTCTTTGTTGCTAGCTGACACTGTTGTTGTCAACAATGACAAACCAGAGGTCCTGACAGTAAAAGTTTCTAAAGCTGTTAAAGATGTGGCATACTCCTTTAATGAAGTTGAAGAAGAAAAGCCTGAGAAGGGAAAAGGTCCGGCTAATGGAACAGAGGCCTTGATATCTAAAACCAATCTGAGGTCAGACAATAATGAGAAATCAAAGGAGGAGCTACGAAGGCATCACCAGGCAGAACTTGCCCGCCAGAAAAATGAAGAAACAGCCCGTAGACTTGCTGGTGATGGACATGGATCAGGTAATAATCGTTCCACTGCAAAGTCTTCATCCGATTTAGTGGCCTACAAGAATGTAAATGATCTCAATCCTAAAAGAGATCTGATGATTCAAGTTGACCAGAATAATGAAGCTGTTCTTTTGCCTATATATGGGAGCATGGTCCCCTTTCATGTTGCCACCATAAGGACAGTTAGTGTCCACGCGGAGTCAGCCAACACTAATCAGGCTTGTTATATCAGAATCATCTTCAATGTTCCTGGGACTCCTTTTAGTCCTCATGATACAAACTCACTGAAAAACTTGGGTTCTATATATTTAAAGGAAGTTTCATTTCGCTCCAAGGACACAAGGCACATAAATGAAGTTACACAGGTGATCAAAAACCTTCGGAAGCGAGTTGTGTCCAGGGAGAGTGAGAGAGCTGAGAGGGCTACGCTTGTTACTCAGGAGAAACTCCAACTAGCTGGTAACAAATTTAAGCCGCTGAGATTGAATGACCTCTGGATTCGACCTGTGTTTGGTGGACGTGGCAGAAAGATTCCGGGTACTCTTGAAGCTCATGCAAATGGGTTTCGTTACTCTACCACCAGACAAGATGAGCGCGTGGATGTAATGTATGGAAATATTAAGCATGCTTTTTTCCAGCCAGCAGAGAATGAGATGATTACTCTCCTTCATTTTCATCTTCACAATCACATAATGGTGGGCAACAAGAAAACCAAAGACGTGCAATTCTATGTGGAGGTTATGGATGTAGTTCAGACCTTGGGAAGTAGTAAGAGATCTGCCTACGACCCAGATGAGATTGAAGAAGAGCAACGAGAGAGGGCTAGGAAGAACAAAGTCAACACTGAATTTCGGACCTTTGTGACTCGGGTACAGGATCTTTGGCAGCAGCCCCAGTTTGAAGGCCTTGAACTTATGTTTGATCAGCCTATGAGGGAGCTTGGTTTCCACGGTGTGCCTTATAAATCCTCAGCATATATCGTCCCTACTACAAATTGCCTGGTTGAACTGATTGAAACTCCTTTTCTTGTTGTCACTCTTGGCGAGATTGAAATTGTGAATCTGGAAAGGGTTGGGCTTGGACAGAAGAATTTTGACCTGGCAATTGTATTCAAGGATTTTAAAAAAGATGTTCTTCGGATTGATTCGATCCCATCCACATCACTTGAAGGTCTCAAGGAATGGCTTGACGACACAGAGATCAAGTACTATGAGAGCAGGATGAATCTGTCGTGGAAACCTATACTGAAGACAATTACTGAGGATCCGCAGAGCTTCCTTGATAATGGAGGTTGGGAATTTTTGAATTTGGAGGGAACGGATTCAGACTCTGAACAGTCTCAGGAGTCAGACCAGGGTTATGAACCATCTGATATGGAATCCGAATCAGAATCGGAGGAAGATTCTTCTGATAGTGCGTCACTTGTGGAGTCTGAGGATGATGAGGAGGAAGATTCAGAAGAAGTCTCGGAGGATGAGGAGGGGAAGACATGGGAAGAGTTGGAGAGGGAAGCAAGCAATGCAGACAGGGAGAAAGGCAACGAGTCGGACAGCGAGGAGGACAGGAAGAGAAGGAAGATGAAAGCTTTTGGCAAGGCTCGAGCTCCGCCTGCTGGTAGCATCCCAAAGCGGTCCAAGCTGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

1067

Amino Acids

119.62

Weight (kDa)

5.59

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FACT-Spt16_Nlob	PF14826	24 - 188	6.8e-41	FACT complex subunit SPT16 N-terminal lobe domain
Peptidase_M24	PF00557	205 - 434	6.2e-29	Metallopeptidase family M24
SPT16	PF08644	552 - 668	5.3e-35	FACT complex subunit (SPT16/CDC68)
PH_SPT16	PF24824	679 - 809	7.9e-55	FACT complex subunit SPT16 PH-like domain
Rttp106-like_middle	PF08512	836 - 923	1.9e-22	Histone chaperone Rttp106-like, middle domain
SPT16_C	PF21091	963 - 1044	1e-16	FACT complex subunit SPT16, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2517
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	1540
AccII	CGCG	2 cut(s)	1751, 2151
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	8 cut(s)	173, 624, 1513, 1751, 2030, 2822, 3161, 3184
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	5 cut(s)	2021, 2402, 2644, 2852, 2860
AcuI	CTGAAG	5 cut(s)	70, 548, 782, 950, 2822
AdeI	CACNNNGTG	1 cut(s)	2509
AfaI	GTAC	4 cut(s)	197, 2095, 2427, 2762
AflII	CTTAAG	1 cut(s)	200
AjiI	CACGTC	2 cut(s)	2075, 2275
AjnI	CCWGG	8 cut(s)	835, 935, 1497, 1804, 1952, 2553, 2652, 2907
Alw21I	GWGCWC	2 cut(s)	400, 3160
Alw26I	GTCTC	4 cut(s)	716, 2732, 2898, 3025
AlwNI	CAGNNNCTG	1 cut(s)	2885
Ama87I	CYCGRG	2 cut(s)	2421, 3153
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	6 cut(s)	448, 621, 996, 1425, 1608, 2458
ApoI	RAATTY	5 cut(s)	2021, 2402, 2644, 2852, 2860
ArsI	GACNNNNNNTTYG	4 cut(s)	554, 586, 1302, 1334
Asp700I	GAANNNNTTC	3 cut(s)	83, 1680, 2875
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	2151
AspS9I	GGNCC	6 cut(s)	997, 1318, 1406, 1708, 2409, 3186
AsuC2I	CCSGG	1 cut(s)	2091
AsuHPI	GGTGA	5 cut(s)	563, 1198, 1487, 1562, 1933
AsuNHI	GCTAGC	1 cut(s)	1279
AvaI	CYCGRG	2 cut(s)	2421, 3153
AvaII	GGWCC	5 cut(s)	1318, 1406, 1708, 2409, 3186
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	433
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BamHI	GGATCC	3 cut(s)	487, 902, 2818
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	3160
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BbsI	GAAGAC	5 cut(s)	76, 198, 1584, 2810, 3047
Bbv12I	GWGCWC	2 cut(s)	400, 3160
BbvCI	CCTCAGC	2 cut(s)	2524, 3194
BccI	CCATC	7 cut(s)	383, 397, 440, 709, 1547, 2716, 2929
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	8 cut(s)	837, 937, 1499, 1806, 1954, 2555, 2654, 2909
BciVI	GTATCC	2 cut(s)	241, 400
BclI	TGATCA	3 cut(s)	885, 1923, 2476
BcnI	CCSGG	1 cut(s)	2091
BcoDI	GTCTC	4 cut(s)	716, 2732, 2898, 3025
BfaI	CTAG	5 cut(s)	147, 1055, 1280, 2009, 2379
BfmI	CTRYAG	1 cut(s)	1005
BfrI	CTTAAG	1 cut(s)	200
BfuI	GTATCC	2 cut(s)	241, 400
BglI	GCCNNNNNGGC	1 cut(s)	341
BglII	AGATCT	2 cut(s)	1645, 2330
BmcAI	AGTACT	1 cut(s)	2762
Bme1390I	CCNGG	9 cut(s)	837, 937, 1499, 1806, 1954, 2091, 2555, 2654, 2909
Bme18I	GGWCC	5 cut(s)	1318, 1406, 1708, 2409, 3186
BmeT110I	CYCGRG	2 cut(s)	2421, 3153
BmgBI	CACGTC	2 cut(s)	2075, 2275
BmgT120I	GGNCC	6 cut(s)	997, 1318, 1406, 1708, 2409, 3186
BmiI	GGNNCC	6 cut(s)	197, 489, 744, 904, 1710, 2820
BmrFI	CCNGG	9 cut(s)	837, 937, 1499, 1806, 1954, 2091, 2555, 2654, 2909
BmrI	ACTGGG	1 cut(s)	2443
BmsI	GCATC	4 cut(s)	943, 1072, 1501, 3183
BmtI	GCTAGC	1 cut(s)	1283
BmuI	ACTGGG	1 cut(s)	2443
BpiI	GAAGAC	5 cut(s)	76, 198, 1584, 2810, 3047
BpmI	CTGGAG	1 cut(s)	66
Bpu10I	CCTNAGC	2 cut(s)	2524, 3194
BpuEI	CTTGAG	3 cut(s)	689, 977, 2714
BpuMI	CCSGG	1 cut(s)	2091
BsaBI	GATNNNNATC	2 cut(s)	957, 1632
BsaI	GGTCTC	1 cut(s)	2732
BsaJI	CCNNGG	7 cut(s)	316, 1805, 1887, 1953, 2313, 2503, 2908
BsaWI	WCCGGW	2 cut(s)	192, 244
Bse1I	ACTGG	5 cut(s)	122, 744, 1041, 1068, 2449
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	3 cut(s)	212, 856, 3079
Bse8I	GATNNNNATC	2 cut(s)	957, 1632
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	8 cut(s)	837, 937, 1499, 1806, 1954, 2555, 2654, 2909
BseDI	CCNNGG	7 cut(s)	316, 1805, 1887, 1953, 2313, 2503, 2908
BseJI	GATNNNNATC	2 cut(s)	957, 1632
BseMI	GCAATG	3 cut(s)	212, 856, 3079
BseNI	ACTGG	5 cut(s)	122, 744, 1041, 1068, 2449
BseRI	GAGGAG	4 cut(s)	1493, 3014, 3047, 3125
BseSI	GKGCMC	1 cut(s)	433
Bsh1236I	CGCG	2 cut(s)	1751, 2151
BshFI	GGCC	6 cut(s)	450, 623, 998, 1427, 1610, 2460
BshNI	GGYRCC	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	400, 3160
BsiHKCI	CYCGRG	2 cut(s)	2421, 3153
BsiSI	CCGG	4 cut(s)	193, 245, 1409, 2090
BslFI	GGGAC	5 cut(s)	88, 1135, 1694, 1822, 2522
BsmAI	GTCTC	4 cut(s)	716, 2732, 2898, 3025
BsmFI	GGGAC	5 cut(s)	88, 1135, 1694, 1822, 2522
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	6 cut(s)	450, 623, 998, 1427, 1610, 2460
Bso31I	GGTCTC	1 cut(s)	2732
BsoBI	CYCGRG	2 cut(s)	2421, 3153
Bsp1286I	GDGCHC	3 cut(s)	400, 433, 3160
Bsp13I	TCCGGA	1 cut(s)	244
BspACI	CCGC	8 cut(s)	173, 624, 1513, 1751, 2030, 2822, 3161, 3184
BspANI	GGCC	6 cut(s)	450, 623, 998, 1427, 1610, 2460
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	1751, 2151
BspHI	TCATGA	2 cut(s)	264, 1825
BspLI	GGNNCC	6 cut(s)	197, 489, 744, 904, 1710, 2820
BspMAI	CTGCAG	1 cut(s)	1009
BspOI	GCTAGC	1 cut(s)	1283
BspQI	GCTCTTC	1 cut(s)	2355
BspT107I	GGYRCC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	2732
BsrDI	GCAATG	3 cut(s)	212, 856, 3079
BsrI	ACTGG	5 cut(s)	122, 744, 1041, 1068, 2449
BssECI	CCNNGG	7 cut(s)	316, 1805, 1887, 1953, 2313, 2503, 2908
BssT1I	CCWWGG	3 cut(s)	316, 1887, 2313
Bst2UI	CCWGG	8 cut(s)	837, 937, 1499, 1806, 1954, 2555, 2654, 2909
Bst4CI	ACNGT	7 cut(s)	460, 541, 1291, 1327, 1738, 2507, 2892
Bst6I	CTCTTC	5 cut(s)	524, 712, 2355, 3045, 3116
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	2 cut(s)	1508, 3074
BstC8I	GCNNGC	8 cut(s)	847, 1195, 1281, 1513, 2181, 2196, 3070, 3165
BstDSI	CCRYGG	1 cut(s)	2503
BstFNI	CGCG	2 cut(s)	1751, 2151
BstHHI	GCGC	1 cut(s)	2151
BstMAI	GTCTC	4 cut(s)	716, 2732, 2898, 3025
BstNI	CCWGG	8 cut(s)	837, 937, 1499, 1806, 1954, 2555, 2654, 2909
BstNSI	RCATGY	2 cut(s)	371, 2183
BstSCI	CCNGG	9 cut(s)	835, 935, 1497, 1804, 1952, 2089, 2553, 2652, 2907
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	2 cut(s)	1751, 2151
BstV2I	GAAGAC	5 cut(s)	76, 198, 1584, 2810, 3047
BstX2I	RGATCY	6 cut(s)	487, 902, 1645, 2330, 2431, 2818
BstXI	CCANNNNNNTGG	1 cut(s)	2012
BstYI	RGATCY	6 cut(s)	487, 902, 1645, 2330, 2431, 2818
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	2 cut(s)	241, 400
BsuRI	GGCC	6 cut(s)	450, 623, 998, 1427, 1610, 2460
BtgI	CCRYGG	1 cut(s)	2503
BtrI	CACGTC	2 cut(s)	2075, 2275
BtsI	GCAGTG	2 cut(s)	400, 1581
BtsIMutI	CAGTG	9 cut(s)	115, 400, 1048, 1061, 1252, 1287, 1581, 1838, 2397
Cac8I	GCNNGC	8 cut(s)	847, 1195, 1281, 1513, 2181, 2196, 3070, 3165
CaiI	CAGNNNCTG	1 cut(s)	2885
CciI	TCATGA	2 cut(s)	264, 1825
CfoI	GCGC	1 cut(s)	2151
Cfr13I	GGNCC	6 cut(s)	997, 1318, 1406, 1708, 2409, 3186
CseI	GACGC	2 cut(s)	373, 2961
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	4 cut(s)	196, 2094, 2426, 2761
CspCI	CAANNNNNGTGG	2 cut(s)	2701, 2736
CviQI	GTAC	4 cut(s)	196, 2094, 2426, 2761
DraI	TTTAAA	2 cut(s)	1866, 2677
DraIII	CACNNNGTG	1 cut(s)	2509
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	5 cut(s)	524, 712, 2355, 3045, 3116
EarI	CTCTTC	5 cut(s)	524, 712, 2355, 3045, 3116
EciI	GGCGGA	1 cut(s)	3150
Ecl136II	GAGCTC	1 cut(s)	3158
Eco130I	CCWWGG	3 cut(s)	316, 1887, 2313
Eco147I	AGGCCT	2 cut(s)	1427, 2460
Eco24I	GRGCYC	1 cut(s)	3160
Eco31I	GGTCTC	1 cut(s)	2732
Eco32I	GATATC	2 cut(s)	787, 1434
Eco47I	GGWCC	5 cut(s)	1318, 1406, 1708, 2409, 3186
Eco53kI	GAGCTC	1 cut(s)	3158
Eco57I	CTGAAG	5 cut(s)	70, 548, 782, 950, 2822
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	2421, 3153
EcoICRI	GAGCTC	1 cut(s)	3158
EcoO109I	RGGNCCY	1 cut(s)	1318
EcoRII	CCWGG	8 cut(s)	835, 935, 1497, 1804, 1952, 2553, 2652, 2907
EcoRV	GATATC	2 cut(s)	787, 1434
EcoT14I	CCWWGG	3 cut(s)	316, 1887, 2313
EcoT38I	GRGCYC	1 cut(s)	3160
ErhI	CCWWGG	3 cut(s)	316, 1887, 2313
FalI	AAGNNNNNCTT	6 cut(s)	588, 620, 1668, 1700, 2673, 2705
FaqI	GGGAC	5 cut(s)	88, 1135, 1694, 1822, 2522
FauI	CCCGC	1 cut(s)	1520
FauNDI	CATATG	2 cut(s)	890, 979
FbaI	TGATCA	3 cut(s)	885, 1923, 2476
FblI	GTMKAC	1 cut(s)	1540
FriOI	GRGCYC	1 cut(s)	3160
FspBI	CTAG	5 cut(s)	147, 1055, 1280, 2009, 2379
GlaI	GCGC	1 cut(s)	2150
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	6 cut(s)	450, 623, 998, 1427, 1610, 2460
HapII	CCGG	4 cut(s)	193, 245, 1409, 2090
HgaI	GACGC	2 cut(s)	373, 2961
HhaI	GCGC	1 cut(s)	2151
Hin6I	GCGC	1 cut(s)	2149
HinP1I	GCGC	1 cut(s)	2149
HincII	GTYRAC	3 cut(s)	1300, 1663, 2395
HindII	GTYRAC	3 cut(s)	1300, 1663, 2395
HindIII	AAGCTT	2 cut(s)	665, 3138
HpaII	CCGG	4 cut(s)	193, 245, 1409, 2090
HphI	GGTGA	5 cut(s)	563, 1198, 1487, 1562, 1933
Hpy166II	GTNNAC	6 cut(s)	1300, 1541, 1663, 1747, 2072, 2395
Hpy8I	GTNNAC	6 cut(s)	1300, 1541, 1663, 1747, 2072, 2395
HpyCH4III	ACNGT	7 cut(s)	460, 541, 1291, 1327, 1738, 2507, 2892
HpyCH4IV	ACGT	3 cut(s)	153, 2074, 2274
HpySE526I	ACGT	3 cut(s)	153, 2074, 2274
HspAI	GCGC	1 cut(s)	2149
Kpn2I	TCCGGA	1 cut(s)	244
KpnI	GGTACC	1 cut(s)	199
Ksp22I	TGATCA	3 cut(s)	885, 1923, 2476
LguI	GCTCTTC	1 cut(s)	2355
LmnI	GCTCC	7 cut(s)	47, 1090, 1480, 1701, 1889, 2491, 3163
LweI	GCATC	4 cut(s)	943, 1072, 1501, 3183
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	5 cut(s)	147, 1055, 1280, 2009, 2379
MaeII	ACGT	3 cut(s)	153, 2074, 2274
MfeI	CAATTG	1 cut(s)	2658
MflI	RGATCY	6 cut(s)	487, 902, 1645, 2330, 2431, 2818
MhlI	GDGCHC	3 cut(s)	400, 433, 3160
MlyI	GAGTC	7 cut(s)	1763, 1804, 2413, 2876, 2909, 2993, 3107
MmeI	TCCRAC	3 cut(s)	2029, 3036, 3081
MroI	TCCGGA	1 cut(s)	244
MroXI	GAANNNNTTC	3 cut(s)	83, 1680, 2875
MslI	CAYNNNNRTG	4 cut(s)	120, 1905, 2112, 2249
MspA1I	CMGCKG	2 cut(s)	44, 2032
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	4 cut(s)	193, 245, 1409, 2090
MspR9I	CCNGG	9 cut(s)	837, 937, 1499, 1806, 1954, 2091, 2555, 2654, 2909
MunI	CAATTG	1 cut(s)	2658
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	8 cut(s)	837, 937, 1499, 1806, 1954, 2555, 2654, 2909
MvnI	CGCG	2 cut(s)	1751, 2151
NciI	CCSGG	1 cut(s)	2091
NdeI	CATATG	2 cut(s)	890, 979
NheI	GCTAGC	1 cut(s)	1279
NlaIV	GGNNCC	6 cut(s)	197, 489, 744, 904, 1710, 2820
NmuCI	GTSAC	7 cut(s)	149, 361, 697, 1212, 2416, 2587, 2973
NspI	RCATGY	2 cut(s)	371, 2183
PaeI	GCATGC	1 cut(s)	2183
PaeR7I	CTCGAG	1 cut(s)	3153
PagI	TCATGA	2 cut(s)	264, 1825
PceI	AGGCCT	2 cut(s)	1427, 2460
PciSI	GCTCTTC	1 cut(s)	2355
PctI	GAATGC	1 cut(s)	934
PdmI	GAANNNNTTC	3 cut(s)	83, 1680, 2875
PleI	GAGTC	7 cut(s)	1762, 1804, 2413, 2876, 2908, 2992, 3106
PpsI	GAGTC	7 cut(s)	1762, 1804, 2413, 2876, 2908, 2992, 3106
PpuMI	RGGWCCY	1 cut(s)	1318
PsiI	TTATAA	1 cut(s)	2517
Psp124BI	GAGCTC	1 cut(s)	3160
Psp5II	RGGWCCY	1 cut(s)	1318
Psp6I	CCWGG	8 cut(s)	835, 935, 1497, 1804, 1952, 2553, 2652, 2907
PspGI	CCWGG	8 cut(s)	835, 935, 1497, 1804, 1952, 2553, 2652, 2907
PspN4I	GGNNCC	6 cut(s)	197, 489, 744, 904, 1710, 2820
PspPI	GGNCC	6 cut(s)	997, 1318, 1406, 1708, 2409, 3186
PspPPI	RGGWCCY	1 cut(s)	1318
PspXI	VCTCGAGB	1 cut(s)	3153
PsrI	GAACNNNNNNTAC	2 cut(s)	1561, 1593
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	2885
PsuI	RGATCY	6 cut(s)	487, 902, 1645, 2330, 2431, 2818
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	197, 2095, 2427, 2762
RsaNI	GTAC	4 cut(s)	196, 2094, 2426, 2761
RseI	CAYNNNNRTG	4 cut(s)	120, 1905, 2112, 2249
SacI	GAGCTC	1 cut(s)	3160
SapI	GCTCTTC	1 cut(s)	2355
Sau96I	GGNCC	6 cut(s)	997, 1318, 1406, 1708, 2409, 3186
ScaI	AGTACT	1 cut(s)	2762
SchI	GAGTC	7 cut(s)	1763, 1804, 2413, 2876, 2909, 2993, 3107
ScrFI	CCNGG	9 cut(s)	837, 937, 1499, 1806, 1954, 2091, 2555, 2654, 2909
SduI	GDGCHC	3 cut(s)	400, 433, 3160
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	4 cut(s)	943, 1072, 1501, 3183
SfcI	CTRYAG	1 cut(s)	1005
Sfr274I	CTCGAG	1 cut(s)	3153
SinI	GGWCC	5 cut(s)	1318, 1406, 1708, 2409, 3186
SlaI	CTCGAG	1 cut(s)	3153
SmiMI	CAYNNNNRTG	4 cut(s)	120, 1905, 2112, 2249
SmlI	CTYRAG	5 cut(s)	200, 668, 992, 2729, 3153
SmoI	CTYRAG	5 cut(s)	200, 668, 992, 2729, 3153
SphI	GCATGC	1 cut(s)	2183
SseBI	AGGCCT	2 cut(s)	1427, 2460
SsiI	CCGC	8 cut(s)	173, 624, 1513, 1751, 2030, 2822, 3161, 3184
SspI	AATATT	1 cut(s)	2173
SspMI	CTAG	5 cut(s)	147, 1055, 1280, 2009, 2379
SstI	GAGCTC	1 cut(s)	3160
StuI	AGGCCT	2 cut(s)	1427, 2460
StyD4I	CCNGG	9 cut(s)	835, 935, 1497, 1804, 1952, 2089, 2553, 2652, 2907
StyI	CCWWGG	3 cut(s)	316, 1887, 2313
TaaI	ACNGT	7 cut(s)	460, 541, 1291, 1327, 1738, 2507, 2892
TaiI	ACGT	3 cut(s)	156, 2077, 2277
TaqI	TCGA	5 cut(s)	13, 926, 2056, 2702, 3154
TatI	WGTACW	1 cut(s)	2760
TauI	GCSGC	2 cut(s)	626, 2032
TscAI	CASTG	9 cut(s)	122, 400, 1048, 1068, 1252, 1294, 1588, 1845, 2404
TseFI	GTSAC	7 cut(s)	149, 361, 697, 1212, 2416, 2587, 2973
Tsp45I	GTSAC	7 cut(s)	149, 361, 697, 1212, 2416, 2587, 2973
TspGWI	ACGGA	2 cut(s)	1133, 2888
TspRI	CASTG	9 cut(s)	122, 400, 1048, 1068, 1252, 1294, 1588, 1845, 2404
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	5 cut(s)	1318, 1406, 1708, 2409, 3186
XapI	RAATTY	5 cut(s)	2021, 2402, 2644, 2852, 2860
XceI	RCATGY	2 cut(s)	371, 2183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	3153
XmiI	GTMKAC	1 cut(s)	1540
XmnI	GAANNNNTTC	3 cut(s)	83, 1680, 2875
XspI	CTAG	5 cut(s)	147, 1055, 1280, 2009, 2379
ZrmI	AGTACT	1 cut(s)	2762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.