Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Forward (+)

2580 .. 3591

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003332.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgctcatcagacctgaacgcaccctcggatccgcaaggtcctatgctaagcgccgtgaagtcaaccgcacaaaaccttctccagcatccccgaaactgagggccacacagaatctcattaaagggctcaagtctgagatcacaactgttgaggaggatttagaaagatttcgtgcagtagagggttcagacgagtttccttttgaaatagtcactcgtttaggatatggcctaaaaaccacggagaccgaactcaaaagagaacttgatgatgaaatcatccgagtgtcagttgagtatgatgatgaggaagatgatgatgatgaggaagatgatgaagatgatgatgatgatgatgatgaagaagaagatgatgatgatgaagatcatgaagaagatgaagatgaagaagatgatgatgatgaagatgatgaagaagaagatgaagaagaagattctggcattccaatgaaagtgtgcatcttccaaagaagtactggacagcagttggagttggatgtcactgctttccatgaggagatttgcgtcgaccacttttcaatcaagaaaccggagcattcagaccgtgatttcaccaaaactggcggcgagtacttggctaacttacagaaggaattagttaaataccttgaggttaaaggggtcacccccaacacaattgaattatggaaggccaacttgaagaacaaaaaaggcaaagagtccctgttgaatatgaaaaacttcaaggcttttatggaacaaagcaccgttttcaccggtggtaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

264

Amino Acids

30.58

Weight (kDa)

4.26

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	3 cut(s)	33, 67, 606
AclWI	GGATC	2 cut(s)	24, 37
AfaI	GTAC	2 cut(s)	496, 614
AgeI	ACCGGT	1 cut(s)	779
AgsI	TTSAA	6 cut(s)	206, 561, 683, 703, 733, 748
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	24, 37
AoxI	GGCC	3 cut(s)	102, 229, 693
AsiGI	ACCGGT	1 cut(s)	779
Asp700I	GAANNNNTTC	2 cut(s)	168, 743
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	39, 102
AsuHPI	GGTGA	3 cut(s)	586, 658, 769
AvaII	GGWCC	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	607
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	608
BmcAI	AGTACT	2 cut(s)	496, 614
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	39, 102
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	95, 489
BpmI	CTGGAG	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	113, 671
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	25, 240
BsaWI	WCCGGW	2 cut(s)	571, 779
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	2 cut(s)	502, 607
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	25, 240
BseGI	GGATG	3 cut(s)	86, 279, 523
BseJI	GATNNNNATC	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	89, 126
BseNI	ACTGG	2 cut(s)	502, 607
BseRI	GAGGAG	2 cut(s)	167, 551
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	104, 231, 695
BshTI	ACCGGT	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	572, 780
BslFI	GGGAC	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	2 cut(s)	462, 577
BsnI	GGCC	3 cut(s)	104, 231, 695
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	29, 138, 385
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	33, 67, 606
BspANI	GGCC	3 cut(s)	104, 231, 695
BspCNI	CTCAG	2 cut(s)	90, 127
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	24, 37
BspTNI	GGTCTC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	2 cut(s)	502, 607
BssAI	RCCGGY	1 cut(s)	779
BssECI	CCNNGG	2 cut(s)	25, 240
BssMI	GATC	3 cut(s)	29, 138, 385
Bst4CI	ACNGT	3 cut(s)	148, 587, 772
BstDEI	CTNAG	3 cut(s)	48, 98, 135
BstDSI	CCRYGG	1 cut(s)	240
BstEII	GGTNACC	1 cut(s)	664
BstF5I	GGATG	3 cut(s)	86, 279, 523
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	32, 141, 388
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	29, 138, 385
BstPI	GGTNACC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	104, 231, 695
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	86, 279, 523
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	522
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	2 cut(s)	39, 102
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	495, 613
CspAI	ACCGGT	1 cut(s)	779
CviAII	CATG	2 cut(s)	389, 533
CviJI	RGCY	6 cut(s)	104, 127, 231, 620, 695, 752
CviKI_1	RGCY	6 cut(s)	104, 127, 231, 620, 695, 752
CviQI	GTAC	2 cut(s)	495, 613
DdeI	CTNAG	3 cut(s)	48, 98, 135
DpnI	GATC	3 cut(s)	31, 140, 387
DpnII	GATC	3 cut(s)	29, 138, 385
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	39
EcoO65I	GGTNACC	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	2 cut(s)	392, 536
FaiI	YATR	8 cut(s)	45, 228, 300, 390, 534, 688, 737, 758
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	2 cut(s)	388, 532
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	607
FokI	GGATG	3 cut(s)	73, 266, 530
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	607
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	104, 231, 695
HapII	CCGG	2 cut(s)	572, 780
HgaI	GACGC	1 cut(s)	535
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	392, 536
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	2 cut(s)	64, 550
HindII	GTYRAC	2 cut(s)	64, 550
HinfI	GANTC	3 cut(s)	112, 455, 722
HpaII	CCGG	2 cut(s)	572, 780
HphI	GGTGA	3 cut(s)	586, 658, 769
Hpy166II	GTNNAC	2 cut(s)	64, 550
Hpy188I	TCNGA	6 cut(s)	11, 29, 136, 190, 284, 583
Hpy188III	TCNNGA	2 cut(s)	389, 565
Hpy8I	GTNNAC	2 cut(s)	64, 550
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	87, 625, 685
HpyCH4III	ACNGT	3 cut(s)	148, 587, 772
HpyCH4V	TGCA	2 cut(s)	176, 480
HpyF3I	CTNAG	3 cut(s)	48, 98, 135
Hsp92II	CATG	2 cut(s)	392, 536
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	29, 138, 385
LmnI	GCTCC	1 cut(s)	574
LpnPI	CCDG	7 cut(s)	27, 96, 444, 483, 585, 588, 740
LweI	GCATC	2 cut(s)	95, 489
MaeIII	GTNAC	3 cut(s)	211, 520, 664
MalI	GATC	3 cut(s)	31, 140, 387
MboI	GATC	3 cut(s)	29, 138, 385
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	635, 678, 683
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	489, 495
MnlI	CCTC	9 cut(s)	35, 93, 145, 148, 175, 301, 319, 529, 646
MroXI	GAANNNNTTC	2 cut(s)	168, 743
MseI	TTAA	3 cut(s)	120, 642, 657
MslI	CAYNNNNRTG	2 cut(s)	284, 467
MspI	CCGG	2 cut(s)	572, 780
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	2 cut(s)	462, 577
NdeII	GATC	3 cut(s)	29, 138, 385
NlaIII	CATG	2 cut(s)	392, 536
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	211, 520, 664
PagI	TCATGA	1 cut(s)	388
PctI	GAATGC	2 cut(s)	462, 577
PdmI	GAANNNNTTC	2 cut(s)	168, 743
PfeI	GAWTC	2 cut(s)	112, 455
PinAI	ACCGGT	1 cut(s)	779
PkrI	GCNGC	1 cut(s)	608
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	39, 102
PspPPI	RGGWCCY	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	496, 614
RsaNI	GTAC	2 cut(s)	495, 613
RseI	CAYNNNNRTG	2 cut(s)	284, 467
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	120, 642, 657
SatI	GCNGC	1 cut(s)	607
Sau3AI	GATC	3 cut(s)	29, 138, 385
Sau96I	GGNCC	2 cut(s)	39, 102
ScaI	AGTACT	2 cut(s)	496, 614
SchI	GAGTC	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	5 cut(s)	16, 41, 79, 651, 657
SfaNI	GCATC	2 cut(s)	95, 489
SgrAI	CRCCGGYG	1 cut(s)	779
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	284, 467
SmlI	CTYRAG	2 cut(s)	128, 650
SmoI	CTYRAG	2 cut(s)	128, 650
Sse9I	AATT	3 cut(s)	635, 678, 683
SsiI	CCGC	3 cut(s)	33, 67, 606
TaaI	ACNGT	3 cut(s)	148, 587, 772
TaqI	TCGA	1 cut(s)	549
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	3 cut(s)	635, 678, 683
TatI	WGTACW	2 cut(s)	494, 612
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	112, 455
Tru1I	TTAA	3 cut(s)	120, 642, 657
Tru9I	TTAA	3 cut(s)	120, 642, 657
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	211, 520, 664
Tsp45I	GTSAC	3 cut(s)	211, 520, 664
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	2 cut(s)	168, 743
ZrmI	AGTACT	2 cut(s)	496, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.