Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

12811212 .. 12812409

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACAAATTGGTTAGCCTGCCATGCTCATCAGACCTGAAGATGGCTTTGTTCTCGTCCGGGCCTCGCAGGCCGCCGTCATACTCTTCCTCCACAGTTTCCCTCCCCATCCGCACCCTCGGATCCGCAAGGTCCTATGCCAAGCGCCGTGAAGTCAACCGCACAAAACCTTCTCCAGCATCCCCGAAACTGAGGGCCACACAGAATCTCATTAAAGGGCTCAAGTCTGAGATCACAACTGTTGAGGAGGATTTAGAAAGATTTCGTGCAGTAGAGGGTTCAGACGAGTTTCCTTTTGAAATAGTCACTCGTTTAGGATATGGCCTAAAAACCACGGAGACTGAACTCAAAAGAGAACTTGATGATGAAATCATCCGAGTTACTGGACAGCAGCTGGAGTTGGATGTCACTGCTTTCCATGAGGAGATTTGCGTCGACCACTTTTCAATCAAGAAACCGGAGCATTCAGACCGTGATTTCACCAAAACTGGCGGCGAGTACTTGGCTAACTTACAGAAGGAATTAGTTAAATACCTTGAGGTTAAAGGGGTCACCCCCAACACAATTGAATTATGGAAGGCCAACTTGAAGAACAAAAAAGGCAAAGAGTCCCTGTTGAATATGAAAAACTTCAAGGCTTTTATGGAACAAAGCACCGTTTTCACCGGTGGTAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.55

Weight (kDa)

9.18

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	5 cut(s)	74, 112, 126, 160, 492
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	665
AgsI	TTSAA	6 cut(s)	299, 447, 569, 589, 619, 634
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	117, 130
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	62, 71, 195, 322, 579
ApeKI	GCWGC	1 cut(s)	391
AsiGI	ACCGGT	1 cut(s)	665
Asp700I	GAANNNNTTC	2 cut(s)	261, 629
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	62, 132, 195
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	472, 544, 655
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	2 cut(s)	37, 116
BceAI	ACGGC	2 cut(s)	61, 132
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	74, 392, 493
BlsI	GCNGC	3 cut(s)	75, 393, 494
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	62, 132, 195
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	159, 416
BpuEI	CTTGAG	2 cut(s)	206, 557
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	118, 333
BsaWI	WCCGGW	2 cut(s)	457, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	2 cut(s)	388, 493
BseDI	CCNNGG	2 cut(s)	118, 333
BseGI	GGATG	4 cut(s)	108, 179, 372, 409
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	182, 219
BseNI	ACTGG	2 cut(s)	388, 493
BseRI	GAGGAG	2 cut(s)	260, 437
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	64, 73, 197, 324, 581
BshTI	ACCGGT	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	60, 458, 666
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	5 cut(s)	64, 73, 197, 324, 581
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	122, 231
BspACI	CCGC	5 cut(s)	74, 112, 126, 160, 492
BspANI	GGCC	5 cut(s)	64, 73, 197, 324, 581
BspCNI	CTCAG	2 cut(s)	183, 220
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	117, 130
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	388, 493
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	2 cut(s)	118, 333
BssMI	GATC	2 cut(s)	122, 231
Bst4CI	ACNGT	4 cut(s)	97, 241, 473, 658
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	20, 71
BstDEI	CTNAG	2 cut(s)	191, 228
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	108, 179, 372, 409
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	125, 234
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	122, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 70
BstPI	GGTNACC	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	5 cut(s)	64, 73, 197, 324, 581
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	108, 179, 372, 409
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	20, 71
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	3 cut(s)	62, 132, 195
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	499
CspAI	ACCGGT	1 cut(s)	665
CviAII	CATG	2 cut(s)	24, 419
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	2 cut(s)	191, 228
DpnI	GATC	2 cut(s)	124, 233
DpnII	GATC	2 cut(s)	122, 231
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	27, 422
FaiI	YATR	8 cut(s)	25, 82, 138, 321, 420, 574, 623, 644
FalI	AAGNNNNNCTT	2 cut(s)	569, 601
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	2 cut(s)	23, 418
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	74, 392, 493
FokI	GGATG	4 cut(s)	95, 166, 359, 416
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	74, 392, 493
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	74, 392, 493
GsuI	CTGGAG	2 cut(s)	159, 416
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	5 cut(s)	64, 73, 197, 324, 581
HapII	CCGG	3 cut(s)	60, 458, 666
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	27, 422
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	157, 436
HindII	GTYRAC	2 cut(s)	157, 436
HinfI	GANTC	2 cut(s)	205, 608
HpaII	CCGG	3 cut(s)	60, 458, 666
HphI	GGTGA	3 cut(s)	472, 544, 655
Hpy166II	GTNNAC	2 cut(s)	157, 436
Hpy188I	TCNGA	6 cut(s)	34, 122, 229, 283, 377, 469
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	2 cut(s)	157, 436
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	180, 511, 571
HpyCH4III	ACNGT	4 cut(s)	97, 241, 473, 658
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 70
HpyF3I	CTNAG	2 cut(s)	191, 228
Hsp92II	CATG	2 cut(s)	27, 422
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	122, 231
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	188
MaeIII	GTNAC	4 cut(s)	304, 379, 406, 550
MalI	GATC	2 cut(s)	124, 233
MboI	GATC	2 cut(s)	122, 231
MboII	GAAGA	3 cut(s)	52, 78, 601
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	8, 521, 564, 569
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	261, 629
MseI	TTAA	3 cut(s)	213, 528, 543
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	3 cut(s)	60, 458, 666
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	24, 70
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	122, 231
NlaIII	CATG	2 cut(s)	27, 422
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	304, 406, 550
PctI	GAATGC	1 cut(s)	463
PdmI	GAANNNNTTC	2 cut(s)	261, 629
PfeI	GAWTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	75, 393, 494
PleI	GAGTC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	616
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspEI	GGTNACC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	62, 132, 195
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	3 cut(s)	213, 528, 543
SatI	GCNGC	3 cut(s)	74, 392, 493
Sau3AI	GATC	2 cut(s)	122, 231
Sau96I	GGNCC	3 cut(s)	62, 132, 195
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	39, 134, 172, 396, 537, 543
SfaNI	GCATC	1 cut(s)	188
SfiI	GGCCNNNNNGGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	665
SinI	GGWCC	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	221, 536
SmoI	CTYRAG	2 cut(s)	221, 536
Sse9I	AATT	4 cut(s)	8, 521, 564, 569
SsiI	CCGC	5 cut(s)	74, 112, 126, 160, 492
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	4 cut(s)	97, 241, 473, 658
TaqI	TCGA	1 cut(s)	435
TasI	AATT	4 cut(s)	8, 521, 564, 569
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	76, 495
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	3 cut(s)	213, 528, 543
Tru9I	TTAA	3 cut(s)	213, 528, 543
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	304, 406, 550
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	3 cut(s)	304, 406, 550
TspDTI	ATGAA	2 cut(s)	381, 638
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	2 cut(s)	261, 629
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.