Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019645.1

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Forward (+)

7075 .. 8137

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019645.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggctttgttctcgtccgggcctcgcaggccgccgtcatactcttcctccacagtttccctccccatccgcaccctcggatccgcaaggtcctatgctaagcgccgtgaagtcaaccgcacaaaaccttctccagcatccccgaaactgagggccacacagaatctcattaaagggctcaagtctgagatcacaactgttgaggaggatttagaaagatttcgtgcagtagagggttcagacgagtttccttttgaaatagtcactcgtttaggatatggcctaaaaaccacggagaccgaactcaaaagagaacttgatgatgaaatcatccgagtgtcagttgagtatgatgatgaggaagatgatgatgatgaggaagatgatgaagatgatgatgatgatgatgatgaagaagaagatgatgatgatgaagatcatgaagaagatgaagatgaagaagatgatgatgatgaagatgatgaagaagaagatgaagaagaagattctggcattccaatgaaagtgtgcatcttccaaagaagtactggacagcagttggagttggatgtcactgctttccatgaggagatttgcgtcgaccacttttcaatcaagaaaccggagcattcagaccgtgatttcaccaaaactggcggcgagtacttggctaacttacagaaggaattagttaaataccttgaggttaaaggggtcacccccaacacaattgaattatggaaggccaacttgaagaacaaaaaaggcaaagagtccctgttgaatatgaaaaacttcaaggcttttatggaacaaagcaccgttttcaccggtggtaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

281

Amino Acids

32.26

Weight (kDa)

4.29

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	5 cut(s)	32, 70, 84, 118, 657
AclWI	GGATC	2 cut(s)	75, 88
AfaI	GTAC	2 cut(s)	547, 665
AgeI	ACCGGT	1 cut(s)	830
AgsI	TTSAA	6 cut(s)	257, 612, 734, 754, 784, 799
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	75, 88
AoxI	GGCC	5 cut(s)	20, 29, 153, 280, 744
AsiGI	ACCGGT	1 cut(s)	830
Asp700I	GAANNNNTTC	2 cut(s)	219, 794
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	20, 90, 153
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	3 cut(s)	637, 709, 820
AvaII	GGWCC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	180
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	19, 90
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	32, 658
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	2 cut(s)	33, 659
BmcAI	AGTACT	2 cut(s)	547, 665
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	20, 90, 153
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	146, 540
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	164, 722
BpuMI	CCSGG	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	76, 291
BsaWI	WCCGGW	2 cut(s)	622, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	830
Bse1I	ACTGG	2 cut(s)	553, 658
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	76, 291
BseGI	GGATG	4 cut(s)	66, 137, 330, 574
BseJI	GATNNNNATC	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	140, 177
BseNI	ACTGG	2 cut(s)	553, 658
BseRI	GAGGAG	2 cut(s)	218, 602
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	5 cut(s)	22, 31, 155, 282, 746
BshTI	ACCGGT	1 cut(s)	830
BsiSI	CCGG	3 cut(s)	18, 623, 831
BslFI	GGGAC	1 cut(s)	760
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	760
BsmI	GAATGC	2 cut(s)	513, 628
BsnI	GGCC	5 cut(s)	22, 31, 155, 282, 746
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	80, 189, 436
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	5 cut(s)	32, 70, 84, 118, 657
BspANI	GGCC	5 cut(s)	22, 31, 155, 282, 746
BspCNI	CTCAG	2 cut(s)	141, 178
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	75, 88
BspTNI	GGTCTC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	553, 658
BssAI	RCCGGY	1 cut(s)	830
BssECI	CCNNGG	2 cut(s)	76, 291
BssMI	GATC	3 cut(s)	80, 189, 436
Bst4CI	ACNGT	4 cut(s)	55, 199, 638, 823
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	99, 149, 186
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	4 cut(s)	66, 137, 330, 574
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	83, 192, 439
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	80, 189, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	5 cut(s)	22, 31, 155, 282, 746
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	66, 137, 330, 574
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	830
Cfr13I	GGNCC	3 cut(s)	20, 90, 153
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	546, 664
CspAI	ACCGGT	1 cut(s)	830
CviAII	CATG	2 cut(s)	440, 584
CviJI	RGCY	9 cut(s)	5, 22, 31, 155, 178, 282, 671, 746, 803
CviKI_1	RGCY	9 cut(s)	5, 22, 31, 155, 178, 282, 671, 746, 803
CviQI	GTAC	2 cut(s)	546, 664
DdeI	CTNAG	3 cut(s)	99, 149, 186
DpnI	GATC	3 cut(s)	82, 191, 438
DpnII	GATC	3 cut(s)	80, 189, 436
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	715
EcoO109I	RGGNCCY	1 cut(s)	90
EcoO65I	GGTNACC	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	443, 587
FaiI	YATR	9 cut(s)	40, 96, 279, 351, 441, 585, 739, 788, 809
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	2 cut(s)	439, 583
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	2 cut(s)	32, 658
FokI	GGATG	4 cut(s)	53, 124, 317, 581
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	32, 658
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	32, 658
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	5 cut(s)	22, 31, 155, 282, 746
HapII	CCGG	3 cut(s)	18, 623, 831
HgaI	GACGC	1 cut(s)	586
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	443, 587
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	2 cut(s)	115, 601
HindII	GTYRAC	2 cut(s)	115, 601
HinfI	GANTC	3 cut(s)	163, 506, 773
HpaII	CCGG	3 cut(s)	18, 623, 831
HphI	GGTGA	3 cut(s)	637, 709, 820
Hpy166II	GTNNAC	2 cut(s)	115, 601
Hpy188I	TCNGA	5 cut(s)	80, 187, 241, 335, 634
Hpy188III	TCNNGA	2 cut(s)	440, 616
Hpy8I	GTNNAC	2 cut(s)	115, 601
Hpy99I	CGWCG	1 cut(s)	602
HpyAV	CCTTC	3 cut(s)	138, 676, 736
HpyCH4III	ACNGT	4 cut(s)	55, 199, 638, 823
HpyCH4V	TGCA	2 cut(s)	227, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	99, 149, 186
Hsp92II	CATG	2 cut(s)	443, 587
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	80, 189, 436
LmnI	GCTCC	1 cut(s)	625
LpnPI	CCDG	8 cut(s)	13, 31, 147, 495, 534, 636, 639, 791
LweI	GCATC	2 cut(s)	146, 540
MaeIII	GTNAC	3 cut(s)	262, 571, 715
MalI	GATC	3 cut(s)	82, 191, 438
MboI	GATC	3 cut(s)	80, 189, 436
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	686, 729, 734
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	540, 546
MroXI	GAANNNNTTC	2 cut(s)	219, 794
MseI	TTAA	3 cut(s)	171, 693, 708
MslI	CAYNNNNRTG	2 cut(s)	335, 518
MspI	CCGG	3 cut(s)	18, 623, 831
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	729
Mva1269I	GAATGC	2 cut(s)	513, 628
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	80, 189, 436
NlaIII	CATG	2 cut(s)	443, 587
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	3 cut(s)	262, 571, 715
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	2 cut(s)	513, 628
PdmI	GAANNNNTTC	2 cut(s)	219, 794
PfeI	GAWTC	2 cut(s)	163, 506
PinAI	ACCGGT	1 cut(s)	830
PkrI	GCNGC	2 cut(s)	33, 659
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	20, 90, 153
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	547, 665
RsaNI	GTAC	2 cut(s)	546, 664
RseI	CAYNNNNRTG	2 cut(s)	335, 518
SalI	GTCGAC	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	171, 693, 708
SatI	GCNGC	2 cut(s)	32, 658
Sau3AI	GATC	3 cut(s)	80, 189, 436
Sau96I	GGNCC	3 cut(s)	20, 90, 153
ScaI	AGTACT	2 cut(s)	547, 665
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	92, 130, 702, 708
SfaNI	GCATC	2 cut(s)	146, 540
SfiI	GGCCNNNNNGGCC	1 cut(s)	28
SgrAI	CRCCGGYG	1 cut(s)	830
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	335, 518
SmlI	CTYRAG	2 cut(s)	179, 701
SmoI	CTYRAG	2 cut(s)	179, 701
Sse9I	AATT	3 cut(s)	686, 729, 734
SsiI	CCGC	5 cut(s)	32, 70, 84, 118, 657
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	55, 199, 638, 823
TaqI	TCGA	1 cut(s)	600
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	686, 729, 734
TatI	WGTACW	2 cut(s)	545, 663
TauI	GCSGC	2 cut(s)	34, 660
TfiI	GAWTC	2 cut(s)	163, 506
Tru1I	TTAA	3 cut(s)	171, 693, 708
Tru9I	TTAA	3 cut(s)	171, 693, 708
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	3 cut(s)	262, 571, 715
Tsp45I	GTSAC	3 cut(s)	262, 571, 715
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	2 cut(s)	219, 794
ZrmI	AGTACT	2 cut(s)	547, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.