Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8039744.1

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 538

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8039744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 400 bp

atggctttgttctcgtccgggcctcgcaggccgccgtcatactcttcctccacagtttccctccccatccgcaccctcggatccgcaaggtcctatgctaagcgccgtgaagtcaaccgcacaaaaccttctccagcatccccgaaactgagggccacacagaatctcattaaagggctcaagtctgagatcacaactgttgaggaggatttagaaagatttcgtgcagtagagggttcagacgagtttccttttgaaatagtcactcgtttaggatatggcctaaaaaccacggagaccgaactcaaaagagaacttgatgatgaaatcatccgagtgtcagttgagtatgatgatgaggaagatgatgatgatgaggaagatgatgaagatgatgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

133

Amino Acids

15.12

Weight (kDa)

4.5

Isoelectric Point (pI)

68.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	32, 70, 84, 118
AclWI	GGATC	2 cut(s)	75, 88
AgsI	TTSAA	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	75, 88
AoxI	GGCC	4 cut(s)	20, 29, 153, 280
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	20, 90, 153
AsuC2I	CCSGG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	180
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	19, 90
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	32
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	20, 90, 153
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	76, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
BseDI	CCNNGG	2 cut(s)	76, 291
BseGI	GGATG	3 cut(s)	66, 137, 330
BseMII	CTCAG	2 cut(s)	140, 177
BseRI	GAGGAG	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	22, 31, 155, 282
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	4 cut(s)	22, 31, 155, 282
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	80, 189
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	4 cut(s)	32, 70, 84, 118
BspANI	GGCC	4 cut(s)	22, 31, 155, 282
BspCNI	CTCAG	2 cut(s)	141, 178
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	75, 88
BspTNI	GGTCTC	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	76, 291
BssMI	GATC	2 cut(s)	80, 189
Bst4CI	ACNGT	2 cut(s)	55, 199
Bst6I	CTCTTC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	99, 149, 186
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	66, 137, 330
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	83, 192
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	80, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	22, 31, 155, 282
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	66, 137, 330
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	20, 90, 153
CviJI	RGCY	6 cut(s)	5, 22, 31, 155, 178, 282
CviKI_1	RGCY	6 cut(s)	5, 22, 31, 155, 178, 282
DdeI	CTNAG	3 cut(s)	99, 149, 186
DpnI	GATC	2 cut(s)	82, 191
DpnII	GATC	2 cut(s)	80, 189
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	4 cut(s)	40, 96, 279, 351
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	53, 124, 317
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	4 cut(s)	22, 31, 155, 282
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	80, 187, 241, 335
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	55, 199
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	3 cut(s)	99, 149, 186
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	80, 189
LpnPI	CCDG	3 cut(s)	13, 31, 147
LweI	GCATC	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	82, 191
MboI	GATC	2 cut(s)	80, 189
MboII	GAAGA	3 cut(s)	36, 374, 392
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	80, 189
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	20, 90, 153
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	80, 189
Sau96I	GGNCC	3 cut(s)	20, 90, 153
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	2 cut(s)	92, 130
SfaNI	GCATC	1 cut(s)	146
SfiI	GGCCNNNNNGGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	4 cut(s)	32, 70, 84, 118
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	55, 199
TaqII	GACCGA	1 cut(s)	314
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.