Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Forward (+)

37037194 .. 37039096

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGACAAATTGGTTAGCCTGCCAAGCTCATCAGACCTGAAGATGGCTTTGTTCACGTCCGGGCCTCGCAGGCCGCCGTCATACTCTTCCTCCACAGTTTCCCTCCCCATCCGCACCCTCGGATCCGCAAGGTCCTATGCTAAGCGCCGTGAAGTCAACCGCACAAAACCTTCTCCAGCATCCCCGAAACTGAGGGCCACACAGAATCTCATTAAAGGGCTCAAGTCTGAGATCACAACTGTTGAGGAGGATTTCGAAAGATTTCGTGCAGGAGAGGGTTCAGACGAGTTTCCTTTTGAAATAGTCACTCGTTTAGGATATGGCCTAAAAACCACGGAGACTGAACTCAAAAGAGAACTTGATGATGAAATCATCCGAGTGTCAGTTGAGTATGATACTGATGAAGAAGATGATGATGAGGAAGATGATGATGATGATGAGGATGATGATGATGATGATGAAGAAGATGATAAAGATGATGATGATGAAAAAGATGAAGATGACGAAGATGATGATGAAGATGACGAAGATGATGAAGATGATGATGAAGATGATGAAGAAGATGAAGAAGAAGATTCTGGCATTCCTATGAAAGTGAGCATCTTCCAAAGAACTACCGGACAGCAGCTGGAGTTGGATGTCACTGCTTTCCATGAGGAGATTTTCGTCGACCACTTTTCAATCAAGAAACCGGAGCATTCAGACCGTGATTTCACCAAAACTGGCGGCGAGTACTTGGCTAACTTACAGAAGGAATTAGTTAAATACCTTGAGGTTAAAGGCGTCACGCCCAACACAATTGAATTATGGAAGGCCAACTTGAAGAACAAAAAAGGCAGAGAGTCCCTGTTGCATATGAAAATCTTCAAGGCTTTTATGGAACAAAGCACCGTTTTCACCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.7

Weight (kDa)

4.21

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	160 - 284	6.6e-11	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	5 cut(s)	74, 112, 126, 160, 726
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	299, 681, 803, 823, 868
AjiI	CACGTC	1 cut(s)	57
AluBI	AGCT	2 cut(s)	27, 628
AluI	AGCT	2 cut(s)	27, 628
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	117, 130
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	5 cut(s)	62, 71, 195, 322, 813
ApeKI	GCWGC	1 cut(s)	625
Asp700I	GAANNNNTTC	2 cut(s)	261, 863
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	62, 132, 195
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	706, 889
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	2 cut(s)	37, 116
BceAI	ACGGC	2 cut(s)	61, 132
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	74, 626, 727
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	3 cut(s)	75, 627, 728
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	62, 132, 195
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	188, 609
BpmI	CTGGAG	2 cut(s)	159, 650
Bpu1102I	GCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	206, 791
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	2 cut(s)	118, 333
BsaWI	WCCGGW	2 cut(s)	617, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	727, 900
BseDI	CCNNGG	2 cut(s)	118, 333
BseGI	GGATG	5 cut(s)	108, 179, 372, 448, 643
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	182, 219
BseNI	ACTGG	2 cut(s)	727, 900
BseRI	GAGGAG	2 cut(s)	260, 671
BseXI	GCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	64, 73, 197, 324, 815
BsiSI	CCGG	3 cut(s)	60, 618, 692
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	2 cut(s)	582, 697
BsnI	GGCC	5 cut(s)	64, 73, 197, 324, 815
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	122, 231
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	5 cut(s)	74, 112, 126, 160, 726
BspANI	GGCC	5 cut(s)	64, 73, 197, 324, 815
BspCNI	CTCAG	2 cut(s)	183, 220
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	117, 130
BspT104I	TTCGAA	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	727, 900
BssECI	CCNNGG	2 cut(s)	118, 333
BssMI	GATC	2 cut(s)	122, 231
BssNI	GRCGYC	1 cut(s)	783
Bst4CI	ACNGT	4 cut(s)	97, 241, 707, 892
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	783
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	20, 71
BstDEI	CTNAG	3 cut(s)	141, 191, 228
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	108, 179, 372, 448, 643
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	125, 234
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	122, 231
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 70
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	5 cut(s)	64, 73, 197, 324, 815
BtgI	CCRYGG	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	5 cut(s)	108, 179, 372, 448, 643
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 907
Cac8I	GCNNGC	2 cut(s)	20, 71
CaiI	CAGNNNCTG	1 cut(s)	628
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	62, 132, 195
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	1 cut(s)	653
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	3 cut(s)	141, 191, 228
DpnI	GATC	2 cut(s)	124, 233
DpnII	GATC	2 cut(s)	122, 231
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	656
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	1 cut(s)	652
FauNDI	CATATG	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	3 cut(s)	74, 626, 727
FokI	GGATG	5 cut(s)	95, 166, 359, 455, 650
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	74, 626, 727
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	74, 626, 727
GsuI	CTGGAG	2 cut(s)	159, 650
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	5 cut(s)	64, 73, 197, 324, 815
HapII	CCGG	3 cut(s)	60, 618, 692
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	1 cut(s)	656
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	157, 670
HindII	GTYRAC	2 cut(s)	157, 670
HinfI	GANTC	3 cut(s)	205, 575, 842
HpaII	CCGG	3 cut(s)	60, 618, 692
HphI	GGTGA	2 cut(s)	706, 889
Hpy166II	GTNNAC	3 cut(s)	54, 157, 670
Hpy188I	TCNGA	6 cut(s)	34, 122, 229, 283, 377, 703
Hpy188III	TCNNGA	1 cut(s)	685
Hpy8I	GTNNAC	3 cut(s)	54, 157, 670
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	3 cut(s)	180, 745, 805
HpyCH4III	ACNGT	4 cut(s)	97, 241, 707, 892
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	269, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 70
HpyF3I	CTNAG	3 cut(s)	141, 191, 228
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	1 cut(s)	656
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	122, 231
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	2 cut(s)	188, 609
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	304, 640, 784
MalI	GATC	2 cut(s)	124, 233
MboI	GATC	2 cut(s)	122, 231
MfeI	CAATTG	1 cut(s)	798
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	8, 755, 798, 803
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	1 cut(s)	615
MroXI	GAANNNNTTC	2 cut(s)	261, 863
MseI	TTAA	3 cut(s)	213, 762, 777
MslI	CAYNNNNRTG	2 cut(s)	377, 587
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	3 cut(s)	60, 618, 692
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	2 cut(s)	582, 697
MwoI	GCNNNNNNNGC	2 cut(s)	24, 70
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	2 cut(s)	122, 231
NlaIII	CATG	1 cut(s)	656
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	304, 640, 784
NspV	TTCGAA	1 cut(s)	255
PctI	GAATGC	2 cut(s)	582, 697
PdmI	GAANNNNTTC	2 cut(s)	261, 863
PfeI	GAWTC	2 cut(s)	205, 575
PkrI	GCNGC	3 cut(s)	75, 627, 728
PleI	GAGTC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	850
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	62, 132, 195
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	2 cut(s)	377, 587
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	213, 762, 777
SatI	GCNGC	3 cut(s)	74, 626, 727
Sau3AI	GATC	2 cut(s)	122, 231
Sau96I	GGNCC	3 cut(s)	62, 132, 195
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	29, 39, 59, 134, 172, 630, 771, 777
SfaNI	GCATC	2 cut(s)	188, 609
SfiI	GGCCNNNNNGGCC	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	377, 587
SmlI	CTYRAG	2 cut(s)	221, 770
SmoI	CTYRAG	2 cut(s)	221, 770
Sse9I	AATT	4 cut(s)	8, 755, 798, 803
SsiI	CCGC	5 cut(s)	74, 112, 126, 160, 726
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	4 cut(s)	97, 241, 707, 892
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	255, 669
TasI	AATT	4 cut(s)	8, 755, 798, 803
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	76, 729
TfiI	GAWTC	2 cut(s)	205, 575
Tru1I	TTAA	3 cut(s)	213, 762, 777
Tru9I	TTAA	3 cut(s)	213, 762, 777
TscAI	CASTG	2 cut(s)	649, 907
TseFI	GTSAC	3 cut(s)	304, 640, 784
TseI	GCWGC	1 cut(s)	625
Tsp45I	GTSAC	3 cut(s)	304, 640, 784
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	649, 907
VpaK11BI	GGWCC	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	669
XmnI	GAANNNNTTC	2 cut(s)	261, 863
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.