Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016877

Physical Location & Seq

Genomic Coordinates Forward (+)

36682006 .. 36683441

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTCATCAGACCTGAAGATGGCTTTGTTCTCGTCCGGGCCTCGCAGGCCGCCGTCATACTCTTCCTCCACAGTTTCCTCCCCATCCGCACGCTCGGATCCGCAAGGTCCTATGCTAAGCGCCGTGAAGTCAACCGCACAAAACCTTCTCCAGCATCCCCGAAACTGAGGGCCACACAGAATCTCATTAAAGGGCTCAAGTCTGAGATCACAACTGTTGAGGAGGATTTAGAAAGATTTCGTGCAGTAGAGGGTTCAGACGAGTTTCCTTTTGAAATAGTCACTCGTTTAGGATATGGCCTAAAAACCACGGAGACTGAACTCAAAAGAGAACTTGATGATGAAATCATCCGAGTGTCAGTTGAGTATGATACTGATGAAGAAGATGATGATGAGGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGATGATGAAGAAGATGATGAAGAAGATGATGAAGATGATGATGAAGAAGATGAAGATGAAGATGAAGAAGATGATGAAGAAGATGAAGATGAAGAAGATGAAGATGATGAAGAAGATGAAGAAGAAGATTCTGGCATTCCCATGAAAGTGAGCATCTTCCAAAGAAGTACTGGACAGCAGCTGGAGTTGGATGTCACTGCTTTCCATGAGGAGATTTGCGTCGACCACTTTTCAATCAAGAAACCGGAGCATTCAGACCGTGATTTCACCAAAACTGGCGGCGAGTACTTGGCTAACTTACAGAAGGAATTAGTTAAATACCTTGAGGTTAAAGGGGTCACGCCCAACACAATTGAATTATGGAAGGCCAACTTGAAGAACAAAAAAGACAGAGTGTCCCTGTTGAATATGAAAAACTTCAAGGCTTTTATGGAACAAAGCACCGTTTTCACCGGTGTTAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

310

Amino Acids

35.85

Weight (kDa)

4.05

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	66 - 283	2.6e-08	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016877)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13680
rosa_laevigata	RLG00000024563
rosa_multiflora	Rmu_co8039744.1_g000001 Rmu_co8383613.1_g000001 Rmu_sc0003332.1_g000002 Rmu_sc0019645.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414380
rosa_rugosa	Rorug03G0082500 Rorug03G0082600
rosa_samantha	Rh3AG129500 Rh3BG150900 Rh3CG150600 Rh3DG151500
rosa_wichuraiana	Rw3G012240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	5 cut(s)	51, 88, 102, 136, 744
AclWI	GGATC	2 cut(s)	93, 106
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	634, 752
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	6 cut(s)	275, 699, 821, 841, 871, 886
AhdI	GACNNNNNGTC	1 cut(s)	859
AluBI	AGCT	1 cut(s)	646
AluI	AGCT	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	93, 106
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	5 cut(s)	39, 48, 171, 298, 831
ApeKI	GCWGC	1 cut(s)	643
AsiGI	ACCGGT	1 cut(s)	917
Asp700I	GAANNNNTTC	2 cut(s)	237, 881
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	39, 108, 171
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	724, 907
AvaII	GGWCC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	2 cut(s)	14, 92
BceAI	ACGGC	2 cut(s)	38, 108
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	51, 644, 745
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	52, 645, 746
BmcAI	AGTACT	2 cut(s)	634, 752
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmgT120I	GGNCC	3 cut(s)	39, 108, 171
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	164, 627
BpmI	CTGGAG	2 cut(s)	135, 668
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	182, 809
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	709, 917
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	640, 745
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	84, 155, 348, 661
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	158, 195
BseNI	ACTGG	2 cut(s)	640, 745
BseRI	GAGGAG	2 cut(s)	236, 689
BseXI	GCAGC	1 cut(s)	655
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	5 cut(s)	41, 50, 173, 300, 833
BshTI	ACCGGT	1 cut(s)	917
BsiSI	CCGG	3 cut(s)	37, 710, 918
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	2 cut(s)	600, 715
BsnI	GGCC	5 cut(s)	41, 50, 173, 300, 833
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	98, 207
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	5 cut(s)	51, 88, 102, 136, 744
BspANI	GGCC	5 cut(s)	41, 50, 173, 300, 833
BspCNI	CTCAG	2 cut(s)	159, 196
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	93, 106
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	640, 745
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	98, 207
Bst4CI	ACNGT	4 cut(s)	74, 217, 725, 910
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	48, 92
BstDEI	CTNAG	3 cut(s)	117, 167, 204
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	84, 155, 348, 661
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	101, 210
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	98, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	41, 50, 173, 300, 833
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	84, 155, 348, 661
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	48, 92
CaiI	CAGNNNCTG	1 cut(s)	646
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	3 cut(s)	39, 108, 171
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	2 cut(s)	633, 751
CspAI	ACCGGT	1 cut(s)	917
CviAII	CATG	2 cut(s)	607, 671
CviQI	GTAC	2 cut(s)	633, 751
DdeI	CTNAG	3 cut(s)	117, 167, 204
DpnI	GATC	2 cut(s)	100, 209
DpnII	GATC	2 cut(s)	98, 207
DriI	GACNNNNNGTC	1 cut(s)	859
Eam1104I	CTCTTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	2 cut(s)	610, 674
FaiI	YATR	9 cut(s)	59, 114, 297, 369, 608, 672, 826, 875, 896
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	2 cut(s)	606, 670
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	51, 644, 745
FokI	GGATG	4 cut(s)	71, 142, 335, 668
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	51, 644, 745
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	51, 644, 745
GsuI	CTGGAG	2 cut(s)	135, 668
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	5 cut(s)	41, 50, 173, 300, 833
HapII	CCGG	3 cut(s)	37, 710, 918
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	610, 674
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	133, 688
HindII	GTYRAC	2 cut(s)	133, 688
HinfI	GANTC	2 cut(s)	181, 593
HpaII	CCGG	3 cut(s)	37, 710, 918
HphI	GGTGA	2 cut(s)	724, 907
Hpy166II	GTNNAC	2 cut(s)	133, 688
Hpy188I	TCNGA	6 cut(s)	11, 98, 205, 259, 353, 721
Hpy188III	TCNNGA	1 cut(s)	703
Hpy8I	GTNNAC	2 cut(s)	133, 688
Hpy99I	CGWCG	1 cut(s)	689
HpyAV	CCTTC	3 cut(s)	156, 763, 823
HpyCH4III	ACNGT	4 cut(s)	74, 217, 725, 910
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	117, 167, 204
Hsp92II	CATG	2 cut(s)	610, 674
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	98, 207
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	2 cut(s)	164, 627
MaeIII	GTNAC	3 cut(s)	280, 658, 802
MalI	GATC	2 cut(s)	100, 209
MboI	GATC	2 cut(s)	98, 207
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	773, 816, 821
MmeI	TCCRAC	1 cut(s)	633
MroXI	GAANNNNTTC	2 cut(s)	237, 881
MseI	TTAA	4 cut(s)	189, 780, 795, 924
MslI	CAYNNNNRTG	3 cut(s)	353, 605, 611
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	3 cut(s)	37, 710, 918
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	816
Mva1269I	GAATGC	2 cut(s)	600, 715
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	98, 207
NlaIII	CATG	2 cut(s)	610, 674
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	3 cut(s)	280, 658, 802
PctI	GAATGC	2 cut(s)	600, 715
PdmI	GAANNNNTTC	2 cut(s)	237, 881
PfeI	GAWTC	2 cut(s)	181, 593
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	3 cut(s)	52, 645, 746
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	39, 108, 171
PspPPI	RGGWCCY	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	646
RsaI	GTAC	2 cut(s)	634, 752
RsaNI	GTAC	2 cut(s)	633, 751
RseI	CAYNNNNRTG	3 cut(s)	353, 605, 611
SalI	GTCGAC	1 cut(s)	686
SaqAI	TTAA	4 cut(s)	189, 780, 795, 924
SatI	GCNGC	3 cut(s)	51, 644, 745
Sau3AI	GATC	2 cut(s)	98, 207
Sau96I	GGNCC	3 cut(s)	39, 108, 171
ScaI	AGTACT	2 cut(s)	634, 752
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	6 cut(s)	16, 110, 148, 648, 789, 795
SfaNI	GCATC	2 cut(s)	164, 627
SfiI	GGCCNNNNNGGCC	1 cut(s)	47
SgrAI	CRCCGGYG	1 cut(s)	917
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	3 cut(s)	353, 605, 611
SmlI	CTYRAG	2 cut(s)	197, 788
SmoI	CTYRAG	2 cut(s)	197, 788
Sse9I	AATT	3 cut(s)	773, 816, 821
SsiI	CCGC	5 cut(s)	51, 88, 102, 136, 744
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	74, 217, 725, 910
TaqI	TCGA	1 cut(s)	687
TasI	AATT	3 cut(s)	773, 816, 821
TatI	WGTACW	2 cut(s)	632, 750
TauI	GCSGC	2 cut(s)	53, 747
TfiI	GAWTC	2 cut(s)	181, 593
Tru1I	TTAA	4 cut(s)	189, 780, 795, 924
Tru9I	TTAA	4 cut(s)	189, 780, 795, 924
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	3 cut(s)	280, 658, 802
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	3 cut(s)	280, 658, 802
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	2 cut(s)	237, 881
ZrmI	AGTACT	2 cut(s)	634, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.