Rh7DG138700
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018510
Physical Location & Seq
Reverse (-)
11773370 .. 11775257
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG138700.1

Sequence Viewer

Length: 315 bp
ATGGAAGGTAGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCGGAGGAAGACAGAATTCTAACCGAGTATATCAGAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGGTAATAACTTACTGCTAACTCTTGCTAATATTTACAACTACTTTCATTTGTTCTCCCTTCTCCTATATATATTTACAGTAAGTATTCTGCAATGTGATGTATGTAGGATTGAAGAGGTGTGGGAAAAGCTGCAGATTGAGGTGGATGAACTATCTGAGCCCCACCGTGAAGCGTGGCGACTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

104

Amino Acids

12.32

Weight (kDa)

6.41

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 58 2.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 63
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 106
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 205, 293
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 1 cut(s) 277
CviAII CATG 2 cut(s) 23, 89
CviJI RGCY 2 cut(s) 256, 286
CviKI_1 RGCY 2 cut(s) 256, 286
DdeI CTNAG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 26, 92
FaiI YATR 9 cut(s) 24, 30, 43, 78, 90, 193, 195, 197, 229
FatI CATG 2 cut(s) 22, 88
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
Hin1II CATG 2 cut(s) 26, 92
HinfI GANTC 4 cut(s) 19, 84, 106, 111
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 83, 283, 314
HpyAV CCTTC 2 cut(s) 9, 194
HpyCH4III ACNGT 2 cut(s) 205, 293
HpyCH4V TGCA 2 cut(s) 217, 259
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 26, 92
LpnPI CCDG 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 112, 121
MboII GAAGA 2 cut(s) 68, 251
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 63
MlyI GAGTC 2 cut(s) 93, 120
MnlI CCTC 3 cut(s) 46, 235, 259
MspA1I CMGCKG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 88
NlaIII CATG 2 cut(s) 26, 92
NmuCI GTSAC 2 cut(s) 112, 121
PfeI GAWTC 2 cut(s) 19, 106
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 2 cut(s) 92, 119
PpsI GAGTC 2 cut(s) 92, 119
PstI CTGCAG 1 cut(s) 261
SatI GCNGC 1 cut(s) 257
SchI GAGTC 2 cut(s) 93, 120
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 10, 40, 130, 246, 258, 270
SfcI CTRYAG 1 cut(s) 257
SgeI CNNG 8 cut(s) 35, 85, 101, 112, 122, 138, 161, 305
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 50
SspI AATATT 1 cut(s) 157
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 205, 293
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 19, 106
TseFI GTSAC 2 cut(s) 112, 121
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 2 cut(s) 112, 121
TspDTI ATGAA 2 cut(s) 161, 288
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.