Rmu_sc0018109.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018109.1
OG0018510
Physical Location & Seq
Forward (+)
11403 .. 12757
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018109.1_g000006.1.cds

Sequence Viewer

Length: 573 bp
atgtgcggacgtccggcatttctccacgatcaagctccgacggcggcgcgcctctcgccggacggaggccaacggcgtcccagaccagtttgcagtgaagacgaaggccaaagagatcgagatcggaggtctaggcatcgtggtcgactgcaaagtgagggttcgtccggcgaccgcagcttagccatcgccaccttctcgacgccggaagagggatgtccgcactttttctggtatgatgcgtctgatgcgcaaagcagttctgagaaggagcaagacatagaggccaaaagagttgaggaatctgctactgccaagaagagaaggcacaagaagaaaagaaaggcacttgcaactgcaatcacatctgaagaaaaacctcataaaagtgagtctgagaaggagcaagacgtagagaccaaaagagttgaggaagctgcagctgccaagaagaaaacagagaaaaggaaaaggaagaagaaaagcaaggcagagaaacgtaatgaatgttgcctatcaattggagttctttctttggcattggtatgccttctgatttatagttttttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.46

Weight (kDa)

9.55

Isoelectric Point (pI)

88.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 13
Acc16I TGCGCA 1 cut(s) 252
AccI GTMKAC 1 cut(s) 145
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 6, 44, 175, 221
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 3 cut(s) 10, 76, 203
AfiI CCNNNNNNNGG 3 cut(s) 58, 65, 212
AluBI AGCT 4 cut(s) 35, 180, 437, 443
AluI AGCT 4 cut(s) 35, 180, 437, 443
Alw26I GTCTC 1 cut(s) 410
AoxI GGCC 3 cut(s) 67, 106, 285
ApeKI GCWGC 4 cut(s) 177, 437, 440, 443
AscI GGCGCGCC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 49, 51, 253
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 189, 424, 430, 452
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 57, 89
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 5 cut(s) 45, 178, 438, 441, 444
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 5 cut(s) 46, 179, 439, 442, 445
BmsI GCATC 3 cut(s) 145, 229, 238
BpiI GAAGAC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 3 cut(s) 10, 76, 203
BsaI GGTCTC 1 cut(s) 410
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 65, 212
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 120
BseGI GGATG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 3 cut(s) 58, 65, 212
BseMII CTCAG 2 cut(s) 255, 387
BseNI ACTGG 1 cut(s) 86
BsePI GCGCGC 1 cut(s) 47
BseXI GCAGC 4 cut(s) 189, 424, 430, 452
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 69, 108, 287
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 4 cut(s) 14, 59, 168, 206
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 58, 65, 212
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 3 cut(s) 69, 108, 287
Bso31I GGTCTC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 28, 115, 121
Bsp1720I GCTNAGC 1 cut(s) 181
BspACI CCGC 4 cut(s) 6, 44, 175, 221
BspANI GGCC 3 cut(s) 69, 108, 287
BspCNI CTCAG 2 cut(s) 256, 388
BspFNI CGCG 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 86
BssHII GCGCGC 1 cut(s) 47
BssMI GATC 3 cut(s) 28, 115, 121
BssNI GRCGYC 3 cut(s) 10, 76, 203
Bst6I CTCTTC 2 cut(s) 204, 314
BstACI GRCGYC 3 cut(s) 10, 76, 203
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 181, 264, 396
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 3 cut(s) 49, 51, 253
BstKTI GATC 3 cut(s) 31, 118, 124
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 28, 115, 121
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 5 cut(s) 41, 55, 177, 248, 443
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 4 cut(s) 189, 424, 430, 452
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 3 cut(s) 69, 108, 287
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 3 cut(s) 49, 51, 253
CseI GACGC 3 cut(s) 65, 211, 231
CviJI RGCY 8 cut(s) 35, 69, 108, 180, 185, 287, 437, 443
CviKI_1 RGCY 8 cut(s) 35, 69, 108, 180, 185, 287, 437, 443
DdeI CTNAG 3 cut(s) 181, 264, 396
DpnI GATC 3 cut(s) 30, 117, 123
DpnII GATC 3 cut(s) 28, 115, 121
Eam1104I CTCTTC 2 cut(s) 204, 314
EarI CTCTTC 2 cut(s) 204, 314
Eco31I GGTCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 390
FaiI YATR 6 cut(s) 237, 281, 384, 547, 561, 571
FaqI GGGAC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 45, 178, 438, 441, 444
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 45, 178, 438, 441, 444
FspBI CTAG 1 cut(s) 132
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 3 cut(s) 48, 50, 252
GluI GCNGC 5 cut(s) 45, 178, 438, 441, 444
HaeIII GGCC 3 cut(s) 69, 108, 287
HapII CCGG 4 cut(s) 14, 59, 168, 206
HgaI GACGC 3 cut(s) 65, 211, 231
HhaI GCGC 3 cut(s) 49, 51, 253
Hin1I GRCGYC 3 cut(s) 10, 76, 203
Hin6I GCGC 3 cut(s) 47, 49, 251
HinP1I GCGC 3 cut(s) 47, 49, 251
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HinfI GANTC 2 cut(s) 302, 392
HpaII CCGG 4 cut(s) 14, 59, 168, 206
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 7 cut(s) 39, 126, 247, 265, 370, 397, 555
Hpy188III TCNNGA 2 cut(s) 119, 199
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 2 cut(s) 43, 205
HpyAV CCTTC 6 cut(s) 98, 205, 262, 318, 394, 560
HpyCH4IV ACGT 3 cut(s) 10, 411, 499
HpyCH4V TGCA 5 cut(s) 93, 151, 353, 359, 440
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 55, 177, 248, 443
HpyF3I CTNAG 3 cut(s) 181, 264, 396
HpySE526I ACGT 3 cut(s) 10, 411, 499
Hsp92I GRCGYC 3 cut(s) 10, 76, 203
HspAI GCGC 3 cut(s) 47, 49, 251
Kzo9I GATC 3 cut(s) 28, 115, 121
LmnI GCTCC 3 cut(s) 40, 271, 403
LpnPI CCDG 7 cut(s) 27, 72, 94, 99, 181, 217, 219
Lsp1109I GCAGC 4 cut(s) 189, 424, 430, 452
LweI GCATC 3 cut(s) 145, 229, 238
MaeI CTAG 1 cut(s) 132
MaeII ACGT 3 cut(s) 10, 411, 499
MalI GATC 3 cut(s) 30, 117, 123
MboI GATC 3 cut(s) 28, 115, 121
MboII GAAGA 8 cut(s) 110, 221, 331, 346, 383, 463, 487, 490
MfeI CAATTG 1 cut(s) 519
MluCI AATT 1 cut(s) 519
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 9 cut(s) 59, 62, 120, 151, 205, 277, 292, 390, 424
MslI CAYNNNNRTG 2 cut(s) 387, 544
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 4 cut(s) 14, 59, 168, 206
MunI CAATTG 1 cut(s) 519
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 41, 55, 177, 248, 443
NdeII GATC 3 cut(s) 28, 115, 121
NsbI TGCGCA 1 cut(s) 252
PalAI GGCGCGCC 1 cut(s) 47
PauI GCGCGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 5 cut(s) 46, 179, 439, 442, 445
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PstI CTGCAG 1 cut(s) 442
PteI GCGCGC 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 387, 544
SalI GTCGAC 1 cut(s) 144
SatI GCNGC 5 cut(s) 45, 178, 438, 441, 444
Sau3AI GATC 3 cut(s) 28, 115, 121
SchI GAGTC 1 cut(s) 401
SfaNI GCATC 3 cut(s) 145, 229, 238
SfcI CTRYAG 1 cut(s) 438
SgsI GGCGCGCC 1 cut(s) 47
SmiMI CAYNNNNRTG 2 cut(s) 387, 544
Sse9I AATT 1 cut(s) 519
SsiI CCGC 4 cut(s) 6, 44, 175, 221
SspMI CTAG 1 cut(s) 132
TaiI ACGT 3 cut(s) 13, 414, 502
TaqI TCGA 3 cut(s) 118, 145, 200
TasI AATT 1 cut(s) 519
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 302
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 177, 437, 440, 443
TspDTI ATGAA 1 cut(s) 519
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 132
ZraI GACGTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.