Rroxscaffold_1G00004500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018510
Physical Location & Seq
Forward (+)
6205047 .. 6205265
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004500.1

Sequence Viewer

Length: 219 bp
ATGCATCCCGGACCAATTTTCGGTGAAGACGAAGGCCAAAGAGATCGAGCTCGGAGGTCCGGGCAGCGTGGTGGACCGCAAAGTGGTAGTCCGATCAAGGTTGACCGGAAAGTGGTTACCGGCGAGTCCACCCGACCGGAAAGTGGTCCAAGATATTCAGAGGGTTCGTCCAGCAACCGCAGCGTAGCCATCGCCGCCTTCTTGACGCCGGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.71

Weight (kDa)

8.27

Isoelectric Point (pI)

66.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 178, 195
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 20, 83, 112, 143
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw21I GWGCWC 1 cut(s) 52
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 2 cut(s) 64, 180
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AspS9I GGNCC 4 cut(s) 11, 57, 74, 146
AsuC2I CCSGG 2 cut(s) 9, 61
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 4 cut(s) 11, 57, 74, 146
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 76, 192
BccI CCATC 1 cut(s) 197
BcnI CCSGG 2 cut(s) 9, 61
BisI GCNGC 3 cut(s) 65, 181, 195
BlsI GCNGC 3 cut(s) 66, 182, 196
Bme1390I CCNGG 2 cut(s) 9, 61
Bme18I GGWCC 4 cut(s) 11, 57, 74, 146
BmgT120I GGNCC 4 cut(s) 11, 57, 74, 146
BmrFI CCNGG 2 cut(s) 9, 61
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 33
BpuMI CCSGG 2 cut(s) 9, 61
BsaHI GRCGYC 1 cut(s) 206
BsaWI WCCGGW 2 cut(s) 105, 136
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 83, 112, 143
Bse118I RCCGGY 1 cut(s) 119
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 4 cut(s) 20, 83, 112, 143
BseXI GCAGC 2 cut(s) 76, 192
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 6 cut(s) 9, 60, 106, 120, 137, 209
BslI CCNNNNNNNGG 4 cut(s) 20, 83, 112, 143
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 43, 93
BspACI CCGC 3 cut(s) 77, 178, 195
BspANI GGCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 43, 93
BssNI GRCGYC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 4
BstKTI GATC 2 cut(s) 46, 96
BstMBI GATC 2 cut(s) 43, 93
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 180, 194
BstPI GGTNACC 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 7, 59
BstV1I GCAGC 2 cut(s) 76, 192
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 4
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 11, 57, 74, 146
CseI GACGC 1 cut(s) 214
CviJI RGCY 3 cut(s) 36, 50, 188
CviKI_1 RGCY 3 cut(s) 36, 50, 188
DpnI GATC 2 cut(s) 45, 95
DpnII GATC 2 cut(s) 43, 93
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 4 cut(s) 11, 57, 74, 146
Eco53kI GAGCTC 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 65, 181, 195
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 65, 181, 195
GluI GCNGC 3 cut(s) 65, 181, 195
HaeIII GGCC 1 cut(s) 36
HapII CCGG 6 cut(s) 9, 60, 106, 120, 137, 209
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 125
HpaII CCGG 6 cut(s) 9, 60, 106, 120, 137, 209
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 3 cut(s) 74, 103, 129
Hpy188I TCNGA 3 cut(s) 54, 93, 160
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 74, 103, 129
HpyAV CCTTC 2 cut(s) 26, 208
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 194
Hsp92I GRCGYC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 43, 93
LpnPI CCDG 6 cut(s) 22, 73, 119, 133, 150, 184
Lsp1109I GCAGC 2 cut(s) 76, 192
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 45, 95
MboI GATC 2 cut(s) 43, 93
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 3 cut(s) 48, 154, 205
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 6 cut(s) 9, 60, 106, 120, 137, 209
MspR9I CCNGG 2 cut(s) 9, 61
MwoI GCNNNNNNNGC 2 cut(s) 180, 194
NciI CCSGG 2 cut(s) 9, 61
NdeII GATC 2 cut(s) 43, 93
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 3 cut(s) 66, 182, 196
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp124BI GAGCTC 1 cut(s) 52
PspEI GGTNACC 1 cut(s) 115
PspPI GGNCC 4 cut(s) 11, 57, 74, 146
SacI GAGCTC 1 cut(s) 52
SatI GCNGC 3 cut(s) 65, 181, 195
Sau3AI GATC 2 cut(s) 43, 93
Sau96I GGNCC 4 cut(s) 11, 57, 74, 146
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 9, 61
SduI GDGCHC 1 cut(s) 52
SetI ASST 3 cut(s) 52, 59, 102
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 4 cut(s) 11, 57, 74, 146
Sse9I AATT 1 cut(s) 15
SsiI CCGC 3 cut(s) 77, 178, 195
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 7, 59
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 15
TauI GCSGC 1 cut(s) 197
TseI GCWGC 2 cut(s) 64, 180
VpaK11BI GGWCC 4 cut(s) 11, 57, 74, 146
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.