Rh7CG141000
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018510
Physical Location & Seq
Reverse (-)
11466670 .. 11467190
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG141000.1

Sequence Viewer

Length: 156 bp
ATGGAAGGTAGTGGAAGGAATCATGGATATAAGAAAGGTCTATGGACAGCGGAGGAAGACAGAATTCTAACCGAGTATATCAAAGTCCATGGAAAAGGCAAGTGGAATCGAGTCACCAAAGTCACAGATCCGGGTACAGCTAGCTGTGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

51

Amino Acids

5.73

Weight (kDa)

8.89

Isoelectric Point (pI)

15.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 40 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 2 cut(s) 140, 144
AluI AGCT 2 cut(s) 140, 144
AlwI GGATC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 88
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 23, 89
CviJI RGCY 2 cut(s) 140, 144
CviKI_1 RGCY 2 cut(s) 140, 144
CviQI GTAC 1 cut(s) 135
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 26, 92
FaiI YATR 5 cut(s) 24, 30, 43, 78, 90
FatI CATG 2 cut(s) 22, 88
FspBI CTAG 1 cut(s) 141
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 26, 92
HinfI GANTC 3 cut(s) 19, 106, 111
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 26, 92
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 1 cut(s) 144
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 112, 121
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 127
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 88
NdeII GATC 1 cut(s) 127
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 26, 92
NmuCI GTSAC 2 cut(s) 112, 121
PfeI GAWTC 2 cut(s) 19, 106
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 132
SetI ASST 4 cut(s) 10, 40, 142, 146
SgeI CNNG 7 cut(s) 35, 85, 101, 112, 122, 143, 144
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 50
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 19, 106
TseFI GTSAC 2 cut(s) 112, 121
Tsp45I GTSAC 2 cut(s) 112, 121
XapI RAATTY 1 cut(s) 63
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.