Rroxscaffold_5G00359800
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018510
Physical Location & Seq
Forward (+)
40072281 .. 40075748
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359800.1

Sequence Viewer

Length: 612 bp
ATGGTCATTCATGAATGGCCTATTAGAGCTTTGGAGGTCACAAGACATAGAGGATTAACTGGAGAGGCTTCACAGGGAAGGCAGATGTATACCCGCAGCTTTCTTTCTCTGATGATAACTGCGCCAAATCTTGAAGCTTCCATCCTTAAGAGTGATATGGAGTTCAAGGGGCTTAAGTTGTGTATGCATGCTTCTGACTATCATATCAGTAATTCATTACTGAATACTGATATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAGTGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGCTCCGACGGCGGCGCGCCTCTTGCCGGACGGTGACTACATGCATCCCAAACTAGTTTGTAGTGAAGACAAAGGCCAAAGAGATCGAGGTCGGAGGTTTGGGCAGCGTGGTCGACTGCAAAGTGGTAGTCCGATCAAGGTCGACTGGAAAGTGGTTACCGGCGAGTCCACCCAACTGGAAAGTGGTCCAGGATGTTCACAGGGTTCGTCCGGCAACCGCAGCGAAGCCATCGCCGCTTTCTCGACGCCGGAGGAGGGACGTCCGCACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

203

Amino Acids

22.8

Weight (kDa)

8.93

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 82 - 110 5.7e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 598
AccI GTMKAC 3 cut(s) 89, 448, 477
AccII CGCG 1 cut(s) 352
AciI CCGC 5 cut(s) 94, 347, 553, 570, 599
AcyI GRCGYC 2 cut(s) 581, 595
AfiI CCNNNNNNNGG 2 cut(s) 361, 590
AflII CTTAAG 2 cut(s) 146, 173
AgsI TTSAA 3 cut(s) 134, 166, 293
AhlI ACTAGT 1 cut(s) 388
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 4 cut(s) 29, 99, 137, 338
AluI AGCT 4 cut(s) 29, 99, 137, 338
AoxI GGCC 2 cut(s) 17, 409
ApeKI GCWGC 4 cut(s) 96, 335, 439, 555
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AscI GGCGCGCC 1 cut(s) 350
AspLEI GCGC 3 cut(s) 124, 352, 354
AspS9I GGNCC 2 cut(s) 255, 521
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 2 cut(s) 255, 521
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 4 cut(s) 108, 347, 451, 567
BccI CCATC 3 cut(s) 149, 306, 572
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 525
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 1 cut(s) 389
BfrI CTTAAG 2 cut(s) 146, 173
BisI GCNGC 6 cut(s) 97, 336, 348, 440, 556, 570
BlsI GCNGC 6 cut(s) 98, 337, 349, 441, 557, 571
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 2 cut(s) 255, 521
BmgT120I GGNCC 2 cut(s) 255, 521
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 81
BsaHI GRCGYC 2 cut(s) 581, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 590
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 3 cut(s) 64, 485, 516
BseBI CCWGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 141, 379, 533
BseLI CCNNNNNNNGG 2 cut(s) 361, 590
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 3 cut(s) 64, 485, 516
BsePI GCGCGC 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 4 cut(s) 108, 347, 451, 567
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 2 cut(s) 19, 411
BsiSI CCGG 4 cut(s) 362, 495, 546, 584
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 2 cut(s) 361, 590
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 2 cut(s) 19, 411
Bsp143I GATC 3 cut(s) 268, 418, 468
BspACI CCGC 5 cut(s) 94, 347, 553, 570, 599
BspANI GGCC 2 cut(s) 19, 411
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 10
BspTI CTTAAG 2 cut(s) 146, 173
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 3 cut(s) 64, 485, 516
BssAI RCCGGY 1 cut(s) 494
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 3 cut(s) 268, 418, 468
BssNAI GTATAC 1 cut(s) 90
BssNI GRCGYC 2 cut(s) 581, 595
Bst1107I GTATAC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 368
BstACI GRCGYC 2 cut(s) 581, 595
BstAFI CTTAAG 2 cut(s) 146, 173
BstC8I GCNNGC 2 cut(s) 189, 352
BstDEI CTNAG 1 cut(s) 278
BstEII GGTNACC 1 cut(s) 490
BstF5I GGATG 3 cut(s) 141, 379, 533
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 3 cut(s) 124, 352, 354
BstKTI GATC 3 cut(s) 271, 421, 471
BstMBI GATC 3 cut(s) 268, 418, 468
BstMWI GCNNNNNNNGC 4 cut(s) 344, 358, 555, 569
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 2 cut(s) 191, 379
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 523
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 4 cut(s) 108, 347, 451, 567
BstV2I GAAGAC 1 cut(s) 408
BstXI CCANNNNNNTGG 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 90
BsuRI GGCC 2 cut(s) 19, 411
BtgZI GCGATG 1 cut(s) 550
BtsCI GGATG 3 cut(s) 141, 379, 533
Cac8I GCNNGC 2 cut(s) 189, 352
CciI TCATGA 1 cut(s) 10
CfoI GCGC 3 cut(s) 124, 352, 354
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 2 cut(s) 255, 521
CseI GACGC 1 cut(s) 589
CviAII CATG 5 cut(s) 11, 188, 252, 299, 376
CviJI RGCY 9 cut(s) 19, 29, 68, 99, 137, 172, 338, 411, 563
CviKI_1 RGCY 9 cut(s) 19, 29, 68, 99, 137, 172, 338, 411, 563
DdeI CTNAG 1 cut(s) 278
DpnI GATC 3 cut(s) 270, 420, 470
DpnII GATC 3 cut(s) 268, 418, 468
Eco47I GGWCC 2 cut(s) 255, 521
Eco91I GGTNACC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 189, 381
FaeI CATG 5 cut(s) 14, 191, 255, 302, 379
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 606
FatI CATG 5 cut(s) 10, 187, 251, 298, 375
FauI CCCGC 1 cut(s) 101
FblI GTMKAC 3 cut(s) 89, 448, 477
Fnu4HI GCNGC 6 cut(s) 97, 336, 348, 440, 556, 570
FokI GGATG 3 cut(s) 128, 366, 540
Fsp4HI GCNGC 6 cut(s) 97, 336, 348, 440, 556, 570
FspBI CTAG 1 cut(s) 389
GlaI GCGC 3 cut(s) 123, 351, 353
GluI GCNGC 6 cut(s) 97, 336, 348, 440, 556, 570
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 19, 411
HapII CCGG 4 cut(s) 362, 495, 546, 584
HgaI GACGC 1 cut(s) 589
HhaI GCGC 3 cut(s) 124, 352, 354
Hin1I GRCGYC 2 cut(s) 581, 595
Hin1II CATG 5 cut(s) 14, 191, 255, 302, 379
Hin6I GCGC 3 cut(s) 122, 350, 352
HinP1I GCGC 3 cut(s) 122, 350, 352
HincII GTYRAC 2 cut(s) 449, 478
HindII GTYRAC 2 cut(s) 449, 478
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 2 cut(s) 322, 500
HpaII CCGG 4 cut(s) 362, 495, 546, 584
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 5 cut(s) 90, 449, 478, 504, 533
Hpy188I TCNGA 6 cut(s) 111, 196, 342, 429, 468, 611
Hpy188III TCNNGA 4 cut(s) 11, 131, 280, 577
Hpy8I GTNNAC 5 cut(s) 90, 449, 478, 504, 533
Hpy99I CGWCG 2 cut(s) 346, 583
HpyAV CCTTC 2 cut(s) 72, 299
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 5 cut(s) 187, 251, 288, 379, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 358, 555, 569
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 595
Hsp92I GRCGYC 2 cut(s) 581, 595
Hsp92II CATG 5 cut(s) 14, 191, 255, 302, 379
HspAI GCGC 3 cut(s) 122, 350, 352
Kzo9I GATC 3 cut(s) 268, 418, 468
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 108, 347, 451, 567
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 3 cut(s) 37, 368, 490
MalI GATC 3 cut(s) 270, 420, 470
MboI GATC 3 cut(s) 268, 418, 468
MboII GAAGA 4 cut(s) 266, 278, 321, 413
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 365, 407
Mph1103I ATGCAT 2 cut(s) 189, 381
MseI TTAA 3 cut(s) 56, 147, 174
MspCI CTTAAG 2 cut(s) 146, 173
MspI CCGG 4 cut(s) 362, 495, 546, 584
MspR9I CCNGG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 4 cut(s) 344, 358, 555, 569
NdeII GATC 3 cut(s) 268, 418, 468
NlaIII CATG 5 cut(s) 14, 191, 255, 302, 379
NmuCI GTSAC 2 cut(s) 37, 368
NsiI ATGCAT 2 cut(s) 189, 381
NspI RCATGY 2 cut(s) 191, 379
PaeI GCATGC 1 cut(s) 191
PagI TCATGA 1 cut(s) 10
PalAI GGCGCGCC 1 cut(s) 350
PauI GCGCGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 6 cut(s) 98, 337, 349, 441, 557, 571
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 523
PspEI GGTNACC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 523
PspPI GGNCC 2 cut(s) 255, 521
PteI GCGCGC 1 cut(s) 350
SalI GTCGAC 2 cut(s) 447, 476
SaqAI TTAA 3 cut(s) 56, 147, 174
SatI GCNGC 6 cut(s) 97, 336, 348, 440, 556, 570
Sau3AI GATC 3 cut(s) 268, 418, 468
Sau96I GGNCC 2 cut(s) 255, 521
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 1 cut(s) 388
SgsI GGCGCGCC 1 cut(s) 350
SinI GGWCC 2 cut(s) 255, 521
SmlI CTYRAG 2 cut(s) 146, 173
SmoI CTYRAG 2 cut(s) 146, 173
SpeI ACTAGT 1 cut(s) 388
SphI GCATGC 1 cut(s) 191
Sse9I AATT 1 cut(s) 211
SsiI CCGC 5 cut(s) 94, 347, 553, 570, 599
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 598
TaqI TCGA 4 cut(s) 421, 448, 477, 578
TasI AATT 1 cut(s) 211
TauI GCSGC 2 cut(s) 350, 572
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 3 cut(s) 56, 147, 174
Tru9I TTAA 3 cut(s) 56, 147, 174
TseFI GTSAC 2 cut(s) 37, 368
TseI GCWGC 4 cut(s) 96, 335, 439, 555
Tsp45I GTSAC 2 cut(s) 37, 368
TspDTI ATGAA 2 cut(s) 27, 204
Vha464I CTTAAG 2 cut(s) 146, 173
VpaK11BI GGWCC 2 cut(s) 255, 521
XceI RCATGY 2 cut(s) 191, 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XmiI GTMKAC 3 cut(s) 89, 448, 477
XspI CTAG 1 cut(s) 389
ZraI GACGTC 1 cut(s) 596
Zsp2I ATGCAT 2 cut(s) 189, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.