Rmu_co8406561.1_g000001
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8406561.1
OG0018510
Physical Location & Seq
Reverse (-)
2 .. 188
187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8406561.1_g000001.1.cds

Sequence Viewer

Length: 187 bp
atgacacacagcggtaacggcattaatggcggtggtgctgttctcagcggcgagggaaggcctttggagacaaacggcggaatggagggcaataagggcctaaagaaaggtccctggacggcgacggaggatcaaatattgatggactacgtgaggcaacacggcgaagggaactggaattcagtgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

62

Amino Acids

6.51

Weight (kDa)

5.48

Isoelectric Point (pI)

7.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018510)

Species Orthologous Gene IDs
malus_domestica MD17G1261200.v1.1
rosa_multiflora Rmu_co8406561.1_g000001 Rmu_sc0018109.1_g000006
rosa_roxburghii Rroxscaffold_1G00004500 Rroxscaffold_5G00359800
rosa_rugosa Rorug04G0450700
rosa_samantha Rh4BG196600 Rh4DG197200 Rh7CG141000 Rh7DG138700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 12, 30, 48, 78
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 178
AjnI CCWGG 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 138
AoxI GGCC 2 cut(s) 59, 97
ApoI RAATTY 1 cut(s) 178
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 97, 110
AvaII GGWCC 1 cut(s) 110
BccI CCATC 1 cut(s) 136
BceAI ACGGC 4 cut(s) 34, 91, 135, 178
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 97, 110
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 179
BshFI GGCC 2 cut(s) 61, 99
BslFI GGGAC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 61, 99
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 4 cut(s) 12, 30, 48, 78
BspANI GGCC 2 cut(s) 61, 99
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 44
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 18, 27, 96
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BsuRI GGCC 2 cut(s) 61, 99
Cfr13I GGNCC 2 cut(s) 97, 110
CviJI RGCY 2 cut(s) 61, 99
CviKI_1 RGCY 2 cut(s) 61, 99
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 2 cut(s) 97, 110
EcoRI GAATTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 113
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 2 cut(s) 61, 99
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 51, 161
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 27, 96
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 150
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 100, 127, 160
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MluCI AATT 1 cut(s) 178
MnlI CCTC 4 cut(s) 46, 79, 121, 147
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 2 cut(s) 12, 48
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 18, 27, 96
NdeII GATC 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 61
PkrI GCNGC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 97, 110
PspPPI RGGWCCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 97, 110
ScrFI CCNGG 1 cut(s) 115
SetI ASST 2 cut(s) 112, 153
SgeI CNNG 5 cut(s) 64, 126, 127, 163, 173
SinI GGWCC 1 cut(s) 110
Sse9I AATT 1 cut(s) 178
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 4 cut(s) 12, 30, 48, 78
SspI AATATT 1 cut(s) 138
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 113
TaiI ACGT 1 cut(s) 153
TasI AATT 1 cut(s) 178
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 24
XapI RAATTY 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.