Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Forward (+)

60103692 .. 60105311

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAACCAACTAGGAATGTTGTTTCTACACCAGAGGCTCCTCCGAGTCCAAACACCCCACTGCAGGATCCAAACGAAAGCAAGAAGAAACTAGTGATACTCGAAGATCAAGACGAAGAGGAAATTGAAGAGGTGAATCGCCCCAATACTGTCCTGTTATTAGATCTAGAGCTTTCTAATACTAGTAAGGATTCAACTTCAAACAGTAGTGGGTTCAACCCAGAACTCAATCTCATCGACAGTCTGCAAATGGGTGGTTCATCATCAGAAACAGATCAAAGCAGCCCTGGTGATCAAGGGGCAGCAGAGCCAAGAGTTTTCTCATGCAACTATTGTCAAAGAAAGTTCTACAGCTCACAAGCACTTGGAGGACACCAAAATGCACACAAAAGAGAGAGGACTCTGGCAAAGAGAGGACAAAGGCAGTTGATGGCGTCAACAGCAGCGGCCGCTGGTTTTGGTGGTTACCCTTACTTCCATCAGCACAACCACCCTTACTTTTCGAGCATGGCTTCTCTGCCTCTTCATGGTGCCTATAACAACAAGTCTTTGGATATTCAGGTCCACTCAATGATTCACAAGCCTGGTGGTAGTGGTAGTGGTAGTGGTATTGGGTTTGGAAGTTCGTATGGAAATCGTGGGCACAAGTCATCAAGACCCATTTTTGATCAACAACCAGCGATTGGAAAACTGGCACCACAGAATTTTCAAACCACATCATCATCAAGAGGTAGTAGTACTAGTAGTGTGGGAAGATTTGACATGGCAAATGTTGGTTGGTTGGAAAACGGCAGTCGTTTCAGGAGTGGTCAACACGAAGAAATGAAGAACCTAGACTTGTCCCTCAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

30.85

Weight (kDa)

6.55

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	530, 694
AccB7I	CCANNNNNTGG	1 cut(s)	683
AciI	CCGC	2 cut(s)	446, 450
AclWI	GGATC	2 cut(s)	62, 75
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	703
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	3 cut(s)	64, 527, 683
AgsI	TTSAA	5 cut(s)	128, 195, 201, 217, 710
AhlI	ACTAGT	3 cut(s)	91, 182, 740
AjnI	CCWGG	2 cut(s)	286, 583
AluBI	AGCT	3 cut(s)	172, 354, 850
AluI	AGCT	3 cut(s)	172, 354, 850
AlwI	GGATC	2 cut(s)	62, 75
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	3 cut(s)	282, 302, 443
ApoI	RAATTY	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	145, 302
AvaII	GGWCC	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	2 cut(s)	530, 694
BbvI	GCAGC	3 cut(s)	294, 314, 455
BccI	CCATC	2 cut(s)	424, 486
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	2 cut(s)	288, 585
BclI	TGATCA	2 cut(s)	292, 667
BcuI	ACTAGT	3 cut(s)	91, 182, 740
BfaI	CTAG	7 cut(s)	12, 92, 167, 183, 741, 833, 853
BfmI	CTRYAG	2 cut(s)	62, 349
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
BlsI	GCNGC	5 cut(s)	284, 304, 445, 448, 451
BmcAI	AGTACT	1 cut(s)	739
Bme1390I	CCNGG	2 cut(s)	288, 585
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	5 cut(s)	6, 39, 69, 532, 696
BmrFI	CCNGG	2 cut(s)	288, 585
BpuEI	CTTGAG	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 527, 683
Bse1I	ACTGG	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	288, 585
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	64, 527, 683
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	645
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	294, 314, 455
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	2 cut(s)	530, 694
BsiEI	CGRYCG	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	3 cut(s)	64, 527, 683
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
BspACI	CCGC	2 cut(s)	446, 450
BspANI	GGCC	1 cut(s)	449
BspLI	GGNNCC	5 cut(s)	6, 39, 69, 532, 696
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	2 cut(s)	62, 75
BspT107I	GGYRCC	2 cut(s)	530, 694
BsrI	ACTGG	1 cut(s)	696
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	288, 585
Bst4CI	ACNGT	3 cut(s)	151, 206, 242
Bst6I	CTCTTC	3 cut(s)	111, 123, 528
BstACI	GRCGYC	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	464
BstKTI	GATC	6 cut(s)	70, 109, 166, 277, 295, 670
BstMBI	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 449
BstNI	CCWGG	2 cut(s)	288, 585
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	286, 583
BstSFI	CTRYAG	2 cut(s)	62, 349
BstSLI	GKGCMC	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	294, 314, 455
BstX2I	RGATCY	2 cut(s)	67, 163
BstYI	RGATCY	2 cut(s)	67, 163
BstZI	CGGCCG	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
CciNI	GCGGCCGC	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	738
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	4 cut(s)	324, 508, 527, 763
CviJI	RGCY	9 cut(s)	38, 172, 285, 310, 354, 449, 512, 583, 850
CviKI_1	RGCY	9 cut(s)	38, 172, 285, 310, 354, 449, 512, 583, 850
CviQI	GTAC	1 cut(s)	738
DpnI	GATC	6 cut(s)	69, 108, 165, 276, 294, 669
DpnII	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
EaeI	YGGCCR	1 cut(s)	447
EagI	CGGCCG	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	111, 123, 528
EarI	CTCTTC	3 cut(s)	111, 123, 528
EclXI	CGGCCG	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	286, 583
FaeI	CATG	4 cut(s)	327, 511, 530, 766
FaiI	YATR	6 cut(s)	325, 509, 528, 537, 630, 764
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	4 cut(s)	323, 507, 526, 762
FbaI	TGATCA	2 cut(s)	292, 667
Fnu4HI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
Fsp4HI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
FspBI	CTAG	7 cut(s)	12, 92, 167, 183, 741, 833, 853
GluI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
HaeIII	GGCC	1 cut(s)	449
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	327, 511, 530, 766
HincII	GTYRAC	2 cut(s)	438, 812
HindII	GTYRAC	2 cut(s)	438, 812
HinfI	GANTC	5 cut(s)	46, 136, 191, 400, 574
HphI	GGTGA	2 cut(s)	145, 302
Hpy166II	GTNNAC	3 cut(s)	438, 565, 812
Hpy188I	TCNGA	2 cut(s)	45, 268
Hpy188III	TCNNGA	5 cut(s)	110, 167, 654, 726, 802
Hpy8I	GTNNAC	3 cut(s)	438, 565, 812
HpyCH4III	ACNGT	3 cut(s)	151, 206, 242
HpyCH4V	TGCA	4 cut(s)	64, 247, 327, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 449
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	327, 511, 530, 766
Ksp22I	TGATCA	2 cut(s)	292, 667
Kzo9I	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	3 cut(s)	294, 314, 455
MaeI	CTAG	7 cut(s)	12, 92, 167, 183, 741, 833, 853
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	6 cut(s)	69, 108, 165, 276, 294, 669
MboI	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
MboII	GAAGA	8 cut(s)	97, 116, 128, 140, 515, 765, 830, 838
MflI	RGATCY	2 cut(s)	67, 163
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	2 cut(s)	123, 703
MlyI	GAGTC	2 cut(s)	55, 394
MmeI	TCCRAC	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	2 cut(s)	446, 452
MspR9I	CCNGG	2 cut(s)	288, 585
MvaI	CCWGG	2 cut(s)	288, 585
MwoI	GCNNNNNNNGC	2 cut(s)	440, 449
NdeII	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
NlaIII	CATG	4 cut(s)	327, 511, 530, 766
NlaIV	GGNNCC	5 cut(s)	6, 39, 69, 532, 696
NotI	GCGGCCGC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	136, 191, 574
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	5 cut(s)	284, 304, 445, 448, 451
PleI	GAGTC	2 cut(s)	54, 394
PpsI	GAGTC	2 cut(s)	54, 394
Psp6I	CCWGG	2 cut(s)	286, 583
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	286, 583
PspN4I	GGNNCC	5 cut(s)	6, 39, 69, 532, 696
PspPI	GGNCC	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	67, 163
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	378
SatI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
Sau3AI	GATC	6 cut(s)	67, 106, 163, 274, 292, 667
Sau96I	GGNCC	1 cut(s)	562
ScaI	AGTACT	1 cut(s)	739
SchI	GAGTC	2 cut(s)	55, 394
ScrFI	CCNGG	2 cut(s)	288, 585
SduI	GDGCHC	1 cut(s)	645
SetI	ASST	7 cut(s)	135, 174, 356, 564, 733, 834, 852
SfcI	CTRYAG	2 cut(s)	62, 349
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SpeI	ACTAGT	3 cut(s)	91, 182, 740
Sse9I	AATT	2 cut(s)	123, 703
SsiI	CCGC	2 cut(s)	446, 450
SspMI	CTAG	7 cut(s)	12, 92, 167, 183, 741, 833, 853
StyD4I	CCNGG	2 cut(s)	286, 583
TaaI	ACNGT	3 cut(s)	151, 206, 242
TaqI	TCGA	3 cut(s)	102, 237, 503
TasI	AATT	2 cut(s)	123, 703
TatI	WGTACW	1 cut(s)	737
TauI	GCSGC	2 cut(s)	449, 452
TfiI	GAWTC	3 cut(s)	136, 191, 574
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	3 cut(s)	282, 302, 443
TspDTI	ATGAA	3 cut(s)	249, 515, 839
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	7 cut(s)	12, 92, 167, 183, 741, 833, 853
ZrmI	AGTACT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.