Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Forward (+)

3469268 .. 3470086

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATTCTTCCAGCGGAAAACCAAGATCATCTGATTCCTCATGCATCATTTCTGCATCCACCAGTCTTCAATTTTCAGATTCCCCAAAGCTGAGCCTAGAAAATTACAACATAGACACAGTAGCAGCACAAGAAGAAGATGATCATGACCAAAAAGAAGGAGTGGAAGGTATAAAGCTTGACCTTATGCTAGCAGGATATGATTCTAGTCAACCACAGCTCAATCAAGAACTCAATCTCCTCGACTGCTTAGAGACAGGTGTAGTCACTCCGAGTTTTAACGGGTCAACTTCCACTGAACAGAAGCTCTTCTCATGCAACTACTGTCAAAGAACATTCTACAGCTCACAGGCGCTTGGTGGTCACCAAAACGCCCACAAAAGAGAAAGGACTTTGGCAAAGCGAGGGCAACGGATGGCATCTGCCGCAGCTTTCGGGCATCCATATGGTTTTGCTCCGGTCCCGTTCCATGGACAGTACAGCAACAGAACCTTGGGTATTCAGGCACACTCAATGAGTCATAAGCCAAGTTCATATAACGTTTACGGTGGTGAGTATGGTCAGATCAACTGGTCAAGGATACCACTAGTTCAGCAACCAGCAATAGCAAAACTAACTTCAACAGAGAATCATTATAATCATCATCAGATGATGATTGCTCCACCGTTGACTTCCACATGTGAAAACATCGGTAGGTTCGATGTAGGAAGGATTCCAGTAGAGTTTCCAACTTCTGAACTATGGCAGAGAGGCGAGGAATTGTTGAAGCCAGCTGAAGAAGAGAAGCAGAAGAACCTTGACTTGTCCCTTAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.19

Weight (kDa)

5.8

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AciI	CCGC	2 cut(s)	15, 426
AclI	AACGTT	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	71, 621, 766
AhlI	ACTAGT	1 cut(s)	586
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	7 cut(s)	91, 178, 220, 307, 345, 431, 773
AluI	AGCT	7 cut(s)	91, 178, 220, 307, 345, 431, 773
Alw26I	GTCTC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	125, 428
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	356, 563
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	137, 440
BccI	CCATC	1 cut(s)	409
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	4 cut(s)	98, 191, 207, 587
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	3 cut(s)	126, 426, 429
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	3 cut(s)	127, 427, 430
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	4 cut(s)	54, 65, 428, 448
BmtI	GCTAGC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	469, 492
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	63, 575, 716
BseDI	CCNNGG	2 cut(s)	469, 492
BseGI	GGATG	3 cut(s)	56, 420, 439
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	63, 575, 716
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	137, 440
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	446, 790
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	446, 790
Bsp143I	GATC	3 cut(s)	26, 142, 564
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	2 cut(s)	15, 426
BspCNI	CTCAG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	462
BspOI	GCTAGC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	63, 575, 716
BssECI	CCNNGG	2 cut(s)	469, 492
BssMI	GATC	3 cut(s)	26, 142, 564
BssT1I	CCWWGG	2 cut(s)	469, 492
Bst4CI	ACNGT	5 cut(s)	121, 326, 477, 548, 666
Bst6I	CTCTTC	2 cut(s)	314, 774
BstC8I	GCNNGC	2 cut(s)	192, 771
BstDEI	CTNAG	2 cut(s)	92, 250
BstDSI	CCRYGG	1 cut(s)	469
BstEII	GGTNACC	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	56, 420, 439
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	29, 145, 567
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	26, 142, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	137, 440
BstV2I	GAAGAC	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	56, 420, 439
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	192, 771
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	5 cut(s)	42, 146, 315, 470, 678
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	92, 250
DpnI	GATC	3 cut(s)	28, 144, 566
DpnII	GATC	3 cut(s)	26, 142, 564
Eam1104I	CTCTTC	2 cut(s)	314, 774
EarI	CTCTTC	2 cut(s)	314, 774
Eco130I	CCWWGG	2 cut(s)	469, 492
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	795
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	469, 492
EcoT22I	ATGCAT	1 cut(s)	47
ErhI	CCWWGG	2 cut(s)	469, 492
FaeI	CATG	5 cut(s)	45, 149, 318, 473, 681
FaqI	GGGAC	2 cut(s)	446, 790
FatI	CATG	5 cut(s)	41, 145, 314, 469, 677
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	126, 426, 429
FokI	GGATG	3 cut(s)	43, 426, 427
Fsp4HI	GCNGC	3 cut(s)	126, 426, 429
FspBI	CTAG	4 cut(s)	98, 191, 207, 587
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	3 cut(s)	126, 426, 429
HaeII	RGCGCY	1 cut(s)	356
HapII	CCGG	1 cut(s)	458
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	45, 149, 318, 473, 681
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	3 cut(s)	212, 288, 669
HindII	GTYRAC	3 cut(s)	212, 288, 669
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	7 cut(s)	5, 35, 80, 203, 517, 628, 712
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	356, 563
Hpy166II	GTNNAC	4 cut(s)	212, 288, 544, 669
Hpy188I	TCNGA	6 cut(s)	34, 79, 273, 564, 648, 736
Hpy188III	TCNNGA	2 cut(s)	146, 227
Hpy8I	GTNNAC	4 cut(s)	212, 288, 544, 669
HpyAV	CCTTC	3 cut(s)	152, 161, 702
HpyCH4III	ACNGT	5 cut(s)	121, 326, 477, 548, 666
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	45, 56, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	92, 250
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	45, 149, 318, 473, 681
HspAI	GCGC	1 cut(s)	353
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	26, 142, 564
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	2 cut(s)	460, 664
Lsp1109I	GCAGC	2 cut(s)	137, 440
LweI	GCATC	4 cut(s)	54, 65, 428, 448
MaeI	CTAG	4 cut(s)	98, 191, 207, 587
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	2 cut(s)	265, 362
MalI	GATC	3 cut(s)	28, 144, 566
MboI	GATC	3 cut(s)	26, 142, 564
MboII	GAAGA	7 cut(s)	59, 146, 149, 301, 788, 791, 802
MluCI	AATT	3 cut(s)	71, 103, 758
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	5 cut(s)	49, 251, 398, 743, 748
Mph1103I	ATGCAT	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	2 cut(s)	279, 810
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	15, 773
MspI	CCGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	26, 142, 564
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	5 cut(s)	45, 149, 318, 473, 681
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	265, 362
NsiI	ATGCAT	1 cut(s)	47
NspI	RCATGY	1 cut(s)	681
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	677
PciSI	GCTCTTC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	6 cut(s)	5, 35, 80, 203, 628, 712
PkrI	GCNGC	3 cut(s)	127, 427, 430
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PscI	ACATGT	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	540
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	279, 810
SatI	GCNGC	3 cut(s)	126, 426, 429
Sau3AI	GATC	3 cut(s)	26, 142, 564
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	526
SfaNI	GCATC	4 cut(s)	54, 65, 428, 448
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	444
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	3 cut(s)	71, 103, 758
SsiI	CCGC	2 cut(s)	15, 426
SspMI	CTAG	4 cut(s)	98, 191, 207, 587
StyI	CCWWGG	2 cut(s)	469, 492
TaaI	ACNGT	5 cut(s)	121, 326, 477, 548, 666
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	243, 699
TasI	AATT	3 cut(s)	71, 103, 758
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	6 cut(s)	5, 35, 80, 203, 628, 712
Tru1I	TTAA	2 cut(s)	279, 810
Tru9I	TTAA	2 cut(s)	279, 810
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	265, 362
TseI	GCWGC	2 cut(s)	125, 428
Tsp45I	GTSAC	2 cut(s)	265, 362
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	460
XceI	RCATGY	1 cut(s)	681
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	4 cut(s)	98, 191, 207, 587
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.