pycom08g04930

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013967
Physical Location & Seq
Forward (+)
3768687 .. 3769535
849 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04930.1

Sequence Viewer

Length: 849 bp
ATGGAACCAGCTAAGAATTATGAAACAAATATCTTCTCATTAGCAGAAGCTCCTCCATGTCCAAACACTCCACTTCAAGACCCAAAGGAAACCAAACAGAAACTAAGAGTTGAAGAAGATGAAGAGGAGATGAAAGATCAAGAAAAAGAGAAGAAACCTAGCATCCGAATAATCGATCTAGACGCTTCGGATAGCAATTCGAATCGCGGGTTCTGCTTCGATAATCCGGAGCTCAATCTACTTGAAAGCCTCGAAACGGGCTCATTAGAAGGCACCACCACCACCACAACCCCCCTTGTTTCTGATGCGGCAGAGCCTAGGGTTTTCTCATGCAACTACTGCCAAAGAAAATTTTACAGCTCGCAGGCGCTCGGAGGGCACCAGAATGCCCACAAACGAGAGAGAACCCTAGCAAAGAGAGGGCAGAGGATGGTGGGGTCCCACATAATGGCCTCAGCTGCAGGTTTTGGGTACCCTTATTACTCAAGTTTGGCTTCTCTGCCTCTCCATGGTGGCGGTGCTTTTAGGGCACTGGACATTCAGGCTCACTCCAAGATTCACAAGCCTAGTTCCATGATGTCTTCGTCTGCGATCAGGTTTGGTGGTTCGTATGGACATCGGACTTTTGGGTCAAGGTCGCTTTTTGATCAGCAACCGGCGGTCGGAAAGCTTGCGGCTGCAGCAGCTAAAGGTGTTGGTGGTGCTGGGAGATTTGACATGGCAAAGAGCAACATGGTTTCACAAAGCAGTGAAGAAATTGGAAAATGTTGGTTGGGAAACGACAGTCGTTTCAAGAGTGGTAGTGATCAGGAGGAAATGAAGAAGCTTGACTTGTCACTCAAGCTCTAA

Protein Analysis

283

Amino Acids

30.83

Weight (kDa)

7.65

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013967)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10970 AT5G25160
fragaria_vesca FvH4_2g40850
malus_domestica MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica Prupe.1G391200_v2.0.a1
pyrus_communis pycom08g04930
rosa_chinensis RchiOBHm_Chr6g0299711
rosa_laevigata RLG00000011394
rosa_multiflora Rmu_sc0002895.1_g000012
rosa_roxburghii Rroxscaffold_7G00168420
rosa_rugosa Rorug06G0291700
rosa_samantha Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana Rw6G035240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 452
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 3 cut(s) 272, 378, 471
AccB7I CCANNNNNTGG 1 cut(s) 448
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 5 cut(s) 207, 308, 516, 659, 674
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 256, 448, 509, 662
AgsI TTSAA 4 cut(s) 77, 113, 245, 793
AluBI AGCT 9 cut(s) 11, 50, 232, 360, 458, 670, 686, 826, 844
AluI AGCT 9 cut(s) 11, 50, 232, 360, 458, 670, 686, 826, 844
Alw21I GWGCWC 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 4 cut(s) 458, 677, 680, 683
ApoI RAATTY 1 cut(s) 350
Asp718I GGTACC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 438
AsuII TTCGAA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 438
AvrII CCTAGG 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 381, 532
BanI GGYRCC 3 cut(s) 272, 378, 471
BanII GRGCYC 2 cut(s) 234, 263
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 454
BbvI GCAGC 4 cut(s) 445, 664, 692, 695
BccI CCATC 1 cut(s) 424
BclI TGATCA 2 cut(s) 646, 805
BfaI CTAG 5 cut(s) 159, 179, 318, 410, 567
BfmI CTRYAG 2 cut(s) 459, 678
BfoI RGCGCY 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 6 cut(s) 309, 459, 675, 678, 681, 684
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 6 cut(s) 310, 460, 676, 679, 682, 685
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 6 cut(s) 6, 274, 380, 439, 440, 473
BmsI GCATC 2 cut(s) 171, 295
BpiI GAAGAC 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 454
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 469, 824
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 317, 508
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 448, 509, 662
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 226
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 317, 508
BseGI GGATG 2 cut(s) 162, 435
BseLI CCNNNNNNNGG 4 cut(s) 256, 448, 509, 662
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 42, 140
BseSI GKGCMC 2 cut(s) 381, 532
BseXI GCAGC 4 cut(s) 445, 664, 692, 695
BseYI CCCAGC 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 1 cut(s) 452
BshNI GGYRCC 3 cut(s) 272, 378, 471
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 227, 656
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 4 cut(s) 256, 448, 509, 662
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 4 cut(s) 234, 263, 381, 532
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 5 cut(s) 136, 175, 591, 646, 805
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 5 cut(s) 207, 308, 516, 659, 674
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 467
BspDI ATCGAT 1 cut(s) 174
BspEI TCCGGA 1 cut(s) 226
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 6 cut(s) 6, 274, 380, 439, 440, 473
BspMAI CTGCAG 2 cut(s) 463, 682
BspMI ACCTGC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 3 cut(s) 272, 378, 471
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 2 cut(s) 317, 508
BssMI GATC 5 cut(s) 136, 175, 591, 646, 805
BssT1I CCWWGG 2 cut(s) 317, 508
Bst4CI ACNGT 1 cut(s) 785
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 362, 366, 672
BstDEI CTNAG 3 cut(s) 12, 104, 454
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 162, 435
BstFNI CGCG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 5 cut(s) 139, 178, 594, 649, 808
BstMBI GATC 5 cut(s) 136, 175, 591, 646, 805
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 7 cut(s) 213, 339, 376, 458, 527, 680, 683
BstSFI CTRYAG 2 cut(s) 459, 678
BstSLI GKGCMC 2 cut(s) 381, 532
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 445, 664, 692, 695
BstV2I GAAGAC 1 cut(s) 573
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 452
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 162, 435
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 530, 754
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 3 cut(s) 362, 366, 672
CfoI GCGC 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 438
ClaI ATCGAT 1 cut(s) 174
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 472
CviAII CATG 6 cut(s) 57, 330, 509, 574, 718, 733
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 3 cut(s) 12, 104, 454
DpnI GATC 5 cut(s) 138, 177, 593, 648, 807
DpnII GATC 5 cut(s) 136, 175, 591, 646, 805
DrdI GACNNNNNNGTC 1 cut(s) 628
DseDI GACNNNNNNGTC 1 cut(s) 628
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 317, 508
Eco24I GRGCYC 2 cut(s) 234, 263
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 438
EcoT14I CCWWGG 2 cut(s) 317, 508
EcoT38I GRGCYC 2 cut(s) 234, 263
ErhI CCWWGG 2 cut(s) 317, 508
FaeI CATG 6 cut(s) 60, 333, 512, 577, 721, 736
FaiI YATR 9 cut(s) 21, 58, 331, 446, 510, 575, 612, 719, 734
FalI AAGNNNNNCTT 4 cut(s) 478, 510, 815, 847
FaqI GGGAC 1 cut(s) 424
FatI CATG 6 cut(s) 56, 329, 508, 573, 717, 732
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 2 cut(s) 646, 805
Fnu4HI GCNGC 6 cut(s) 309, 459, 675, 678, 681, 684
FokI GGATG 2 cut(s) 149, 442
FriOI GRGCYC 2 cut(s) 234, 263
Fsp4HI GCNGC 6 cut(s) 309, 459, 675, 678, 681, 684
FspBI CTAG 5 cut(s) 159, 179, 318, 410, 567
GlaI GCGC 1 cut(s) 369
GluI GCNGC 6 cut(s) 309, 459, 675, 678, 681, 684
GsaI CCCAGC 1 cut(s) 708
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 1 cut(s) 452
HapII CCGG 2 cut(s) 227, 656
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 370
Hin1II CATG 6 cut(s) 60, 333, 512, 577, 721, 736
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 2 cut(s) 668, 824
HinfI GANTC 2 cut(s) 202, 556
HpaII CCGG 2 cut(s) 227, 656
Hpy188I TCNGA 6 cut(s) 167, 190, 304, 374, 621, 665
Hpy188III TCNNGA 6 cut(s) 77, 140, 179, 227, 793, 809
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 785
HpyCH4V TGCA 3 cut(s) 333, 461, 680
HpyF10VI GCNNNNNNNGC 7 cut(s) 213, 339, 376, 458, 527, 680, 683
HpyF3I CTNAG 3 cut(s) 12, 104, 454
Hsp92II CATG 6 cut(s) 60, 333, 512, 577, 721, 736
HspAI GCGC 1 cut(s) 368
KflI GGGWCCC 1 cut(s) 438
Kpn2I TCCGGA 1 cut(s) 226
KpnI GGTACC 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 646, 805
Kzo9I GATC 5 cut(s) 136, 175, 591, 646, 805
LmnI GCTCC 2 cut(s) 55, 229
Lsp1109I GCAGC 4 cut(s) 445, 664, 692, 695
LweI GCATC 2 cut(s) 171, 295
MaeI CTAG 5 cut(s) 159, 179, 318, 410, 567
MaeIII GTNAC 1 cut(s) 834
MalI GATC 5 cut(s) 138, 177, 593, 648, 807
MboI GATC 5 cut(s) 136, 175, 591, 646, 805
MboII GAAGA 8 cut(s) 25, 125, 128, 134, 163, 573, 764, 832
MhlI GDGCHC 4 cut(s) 234, 263, 381, 532
MluCI AATT 4 cut(s) 16, 196, 350, 756
MmeI TCCRAC 1 cut(s) 643
MnlI CCTC 9 cut(s) 63, 118, 260, 368, 413, 420, 463, 513, 805
MroI TCCGGA 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 227, 656
Mva1269I GAATGC 1 cut(s) 391
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 7 cut(s) 213, 339, 376, 458, 527, 680, 683
NcoI CCATGG 1 cut(s) 508
NdeII GATC 5 cut(s) 136, 175, 591, 646, 805
NlaIII CATG 6 cut(s) 60, 333, 512, 577, 721, 736
NlaIV GGNNCC 6 cut(s) 6, 274, 380, 439, 440, 473
NmuCI GTSAC 1 cut(s) 834
NspV TTCGAA 1 cut(s) 200
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 202, 556
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 6 cut(s) 310, 460, 676, 679, 682, 685
PpuMI RGGWCCY 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 704
PspN4I GGNNCC 6 cut(s) 6, 274, 380, 439, 440, 473
PspPI GGNCC 1 cut(s) 438
PspPPI RGGWCCY 1 cut(s) 438
PstI CTGCAG 2 cut(s) 463, 682
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 1 cut(s) 384
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 6 cut(s) 309, 459, 675, 678, 681, 684
Sau3AI GATC 5 cut(s) 136, 175, 591, 646, 805
Sau96I GGNCC 1 cut(s) 438
SduI GDGCHC 4 cut(s) 234, 263, 381, 532
SfaNI GCATC 2 cut(s) 171, 295
SfcI CTRYAG 2 cut(s) 459, 678
SfuI TTCGAA 1 cut(s) 200
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 2 cut(s) 484, 839
SmoI CTYRAG 2 cut(s) 484, 839
Sse9I AATT 4 cut(s) 16, 196, 350, 756
SsiI CCGC 5 cut(s) 207, 308, 516, 659, 674
SspMI CTAG 5 cut(s) 159, 179, 318, 410, 567
SstI GAGCTC 1 cut(s) 234
StyI CCWWGG 2 cut(s) 317, 508
TaaI ACNGT 1 cut(s) 785
TaqI TCGA 4 cut(s) 174, 200, 219, 252
TasI AATT 4 cut(s) 16, 196, 350, 756
TauI GCSGC 2 cut(s) 311, 677
TfiI GAWTC 2 cut(s) 202, 556
TscAI CASTG 2 cut(s) 537, 754
TseFI GTSAC 1 cut(s) 834
TseI GCWGC 4 cut(s) 458, 677, 680, 683
Tsp45I GTSAC 1 cut(s) 834
TspDTI ATGAA 4 cut(s) 36, 135, 146, 833
TspRI CASTG 2 cut(s) 537, 754
Van91I CCANNNNNTGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 1 cut(s) 350
XbaI TCTAGA 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 5 cut(s) 159, 179, 318, 410, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.