Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Forward (+)

4721087 .. 4721935

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1059200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAACCAGCTAAGAATTATGAAACAAATATCTTCTTAGTAGCAGAAGCTCCTCCATGTCCAAACACTCCACTTCAAGATCCAAAAGAAACCAAACAGAAACTAAGAGTTGAAGAAGATGAAGAGGAGATGAAGGATCAAGAAAAAGAGAAGAAACCCAGCATCCGAATAATCGATCTAGAGGCTTCGGATAGCAATTCGAATCGTGGGTTCAGCTTCGATAATCCAGAGCTCAATCTACTCGAATGCCTCGAAACGGGCTCATCAGAAGGCACCACCACCACCACCACCACCACCCTTGTTTCTGATGCGGCAGAGCCTAGGGTTTTCTCATGCAACTACTGCCACAGAAAATTTTACAGCTCGCAGGCGCTCGGAGGGCACCAGAATGCCCACAAACGAGAAAGAACCCTAGCAAAGAGAGGGCAGAGGATGTTGGGGTCCCACATAATGGCCTCAGCTGCAGGTTTTGGGTACCCTTATTACTCAAGTTTGGCTTCTCTGCCTCTCCATGGTGGTGCTTTTAGGGCACTGGACATTCACGCTCACTCCACGATTCACAAACCTAGTTCCATGATGCCTTCGTCTGCGATCAGGTTTGGTGGTTCGTATGGACATCGGAGTTTTGGGTCAAGGTCGCTTTTTGATCAGCAACCGGCGGTCGGAAAGCTTGCGGCTGCGGCAACTAGAGGTGTTGGTGGTGCTGGGAGATTTGACATGGCAAAGAGCAACATGGTTTCACAAAGCAGTGAAGAAATTGGAAAATGTTGGTTGGGAAACGACAGTCGTTTCAAGAATAGTAGCGATCAGGAGAAAATGAAGAAGCTTGACTTGTCACTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.99

Weight (kDa)

8.2

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	474
AccB1I	GGYRCC	3 cut(s)	272, 381, 474
AccB7I	CCANNNNNTGG	1 cut(s)	451
AciI	CCGC	4 cut(s)	311, 659, 674, 680
AclWI	GGATC	2 cut(s)	74, 144
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	4 cut(s)	256, 451, 512, 662
AgsI	TTSAA	3 cut(s)	77, 113, 793
AluBI	AGCT	9 cut(s)	11, 50, 216, 232, 363, 461, 670, 826, 844
AluI	AGCT	9 cut(s)	11, 50, 216, 232, 363, 461, 670, 826, 844
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	74, 144
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	461, 677
ApoI	RAATTY	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	474
AspA2I	CCTAGG	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	441
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	441
AvrII	CCTAGG	1 cut(s)	320
BaeGI	GKGCMC	2 cut(s)	384, 532
BanI	GGYRCC	3 cut(s)	272, 381, 474
BanII	GRGCYC	2 cut(s)	234, 263
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	448, 664
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	5 cut(s)	179, 321, 413, 567, 687
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	5 cut(s)	312, 462, 675, 678, 681
BlnI	CCTAGG	1 cut(s)	320
BlsI	GCNGC	5 cut(s)	313, 463, 676, 679, 682
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	6 cut(s)	6, 274, 383, 442, 443, 476
BmsI	GCATC	3 cut(s)	171, 298, 567
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	472, 824
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	320, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 451, 512, 662
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	320, 511
BseGI	GGATG	2 cut(s)	162, 438
BseLI	CCNNNNNNNGG	4 cut(s)	256, 451, 512, 662
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	42, 140
BseSI	GKGCMC	2 cut(s)	384, 532
BseXI	GCAGC	2 cut(s)	448, 664
BseYI	CCCAGC	2 cut(s)	158, 704
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	455
BshNI	GGYRCC	3 cut(s)	272, 381, 474
BshVI	ATCGAT	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	656
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	4 cut(s)	256, 451, 512, 662
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	2 cut(s)	251, 394
BsnI	GGCC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	234, 263, 384, 532
Bsp143I	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	4 cut(s)	311, 659, 674, 680
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	470
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	6 cut(s)	6, 274, 383, 442, 443, 476
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	74, 144
BspT104I	TTCGAA	1 cut(s)	200
BspT107I	GGYRCC	3 cut(s)	272, 381, 474
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	2 cut(s)	320, 511
BssMI	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
BssT1I	CCWWGG	2 cut(s)	320, 511
Bst4CI	ACNGT	1 cut(s)	785
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	365, 369, 672
BstDEI	CTNAG	4 cut(s)	12, 37, 104, 457
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	162, 438
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	6 cut(s)	82, 139, 178, 594, 649, 808
BstMBI	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 379, 461, 527, 680
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	384, 532
BstV1I	GCAGC	2 cut(s)	448, 664
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	162, 438
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	2 cut(s)	530, 754
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	3 cut(s)	365, 369, 672
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	441
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	475
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	6 cut(s)	57, 333, 512, 574, 718, 733
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	12, 37, 104, 457
DpnI	GATC	6 cut(s)	81, 138, 177, 593, 648, 807
DpnII	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	320, 511
Eco24I	GRGCYC	2 cut(s)	234, 263
Eco47I	GGWCC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	320, 511
EcoT38I	GRGCYC	2 cut(s)	234, 263
ErhI	CCWWGG	2 cut(s)	320, 511
FaeI	CATG	6 cut(s)	60, 336, 515, 577, 721, 736
FaiI	YATR	9 cut(s)	21, 58, 334, 449, 513, 575, 612, 719, 734
FalI	AAGNNNNNCTT	4 cut(s)	481, 513, 815, 847
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	6 cut(s)	56, 332, 511, 573, 717, 732
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	312, 462, 675, 678, 681
FokI	GGATG	2 cut(s)	149, 445
FriOI	GRGCYC	2 cut(s)	234, 263
Fsp4HI	GCNGC	5 cut(s)	312, 462, 675, 678, 681
FspBI	CTAG	5 cut(s)	179, 321, 413, 567, 687
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	5 cut(s)	312, 462, 675, 678, 681
GsaI	CCCAGC	2 cut(s)	162, 708
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	6 cut(s)	60, 336, 515, 577, 721, 736
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	2 cut(s)	668, 824
HinfI	GANTC	2 cut(s)	202, 556
HpaII	CCGG	1 cut(s)	656
Hpy188I	TCNGA	7 cut(s)	167, 190, 268, 307, 377, 621, 665
Hpy188III	TCNNGA	6 cut(s)	77, 140, 179, 227, 793, 809
HpyAV	CCTTC	3 cut(s)	127, 263, 591
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4V	TGCA	2 cut(s)	336, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 379, 461, 527, 680
HpyF3I	CTNAG	4 cut(s)	12, 37, 104, 457
Hsp92II	CATG	6 cut(s)	60, 336, 515, 577, 721, 736
HspAI	GCGC	1 cut(s)	371
KflI	GGGWCCC	1 cut(s)	441
KpnI	GGTACC	1 cut(s)	478
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	448, 664
LweI	GCATC	3 cut(s)	171, 298, 567
MaeI	CTAG	5 cut(s)	179, 321, 413, 567, 687
MaeIII	GTNAC	1 cut(s)	834
MalI	GATC	6 cut(s)	81, 138, 177, 593, 648, 807
MboI	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
MboII	GAAGA	7 cut(s)	25, 125, 128, 134, 163, 764, 832
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	4 cut(s)	234, 263, 384, 532
MluCI	AATT	4 cut(s)	16, 196, 353, 756
MmeI	TCCRAC	1 cut(s)	643
MslI	CAYNNNNRTG	2 cut(s)	387, 516
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	1 cut(s)	656
Mva1269I	GAATGC	2 cut(s)	251, 394
MwoI	GCNNNNNNNGC	5 cut(s)	342, 379, 461, 527, 680
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
NlaIII	CATG	6 cut(s)	60, 336, 515, 577, 721, 736
NlaIV	GGNNCC	6 cut(s)	6, 274, 383, 442, 443, 476
NmuCI	GTSAC	1 cut(s)	834
NspV	TTCGAA	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	2 cut(s)	251, 394
PfeI	GAWTC	2 cut(s)	202, 556
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	5 cut(s)	313, 463, 676, 679, 682
PpuMI	RGGWCCY	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	441
PspFI	CCCAGC	2 cut(s)	158, 704
PspN4I	GGNNCC	6 cut(s)	6, 274, 383, 442, 443, 476
PspPI	GGNCC	1 cut(s)	441
PspPPI	RGGWCCY	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	387, 516
SacI	GAGCTC	1 cut(s)	234
SatI	GCNGC	5 cut(s)	312, 462, 675, 678, 681
Sau3AI	GATC	6 cut(s)	79, 136, 175, 591, 646, 805
Sau96I	GGNCC	1 cut(s)	441
SduI	GDGCHC	4 cut(s)	234, 263, 384, 532
SfaNI	GCATC	3 cut(s)	171, 298, 567
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	2 cut(s)	387, 516
SmlI	CTYRAG	2 cut(s)	487, 839
SmoI	CTYRAG	2 cut(s)	487, 839
Sse9I	AATT	4 cut(s)	16, 196, 353, 756
SsiI	CCGC	4 cut(s)	311, 659, 674, 680
SspMI	CTAG	5 cut(s)	179, 321, 413, 567, 687
SstI	GAGCTC	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	320, 511
TaaI	ACNGT	1 cut(s)	785
TaqI	TCGA	5 cut(s)	174, 200, 219, 243, 252
TasI	AATT	4 cut(s)	16, 196, 353, 756
TauI	GCSGC	3 cut(s)	314, 677, 683
TfiI	GAWTC	2 cut(s)	202, 556
TscAI	CASTG	2 cut(s)	537, 754
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	2 cut(s)	461, 677
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	4 cut(s)	36, 135, 146, 833
TspRI	CASTG	2 cut(s)	537, 754
Van91I	CCANNNNNTGG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	353
XbaI	TCTAGA	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	5 cut(s)	179, 321, 413, 567, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.