Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Reverse (-)

29026582 .. 29027430

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAACCAACTAGGAATGTTGTTTCTGTAGCAGATGTTCCTCCAAGTCCAAACACCCCGCTGCAGGATCCAAACGAAAGCAAGAAGAAGCTAGTGATACTCGATGATCAAGACGGAGAGGAAGTTGAAGAGGTGAATCCTCCCAATACTGTCCTCTTATTAGATCTAGAGCTTTCTAGTACTAGTAAGGATTCAACTTCAAACAATAGTGGGCTCAACCCAGAACTCAATCTCATCGACTCTCTGCAAATGGGTGGTTCATCATCTGAAACAGATCAAAGCAGCCCTGGTGATCAGGGCGCAGCAGAGCCAAGAGTTTTCTCATGCAACTATTGTCAAAGAAAGTTCTACAGCTCACAAGCACTTGGAGGACACCAAAATGCACACAAAAGAGAGAGGACTCTAGCAAAGAGAGGACAAAGGCAGTTGATGGCGTCAGCGGCGGCGGCCGCTGGTTTAGGTGGTTACCCTTATTTCCATCATCATCAGAACCACCCTTACTTTTCGAGCTTGGCTTCTCTGCCTCTTCATGGTGCCTATAACAACAAGTCTTTGGATATTCAGGTTCACTCAATGATTCATAAGCCTAGTGGTAGTGGTAGTGGTATCGGGTTCGGAAGTTCGTATGGAAGTCGTGGCCACAGGTCCTCAAGACCCCTTTTTGATCAACAACCAGCGATTGGGAAACTGGCAGCACAGAATTTCCAAACCACAACATCATTGAGAGGTAGTGGTACTACCGTGGGAAGATTTGACATGACAAATGTTGCTTGGTTGGAAAGCGGCAGTCGTTTTAGGAGTGGCCAACAAGAAGAAATGAAGAAGCTGGACTTGTCCCTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

30.51

Weight (kDa)

6.8

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	680
AciI	CCGC	6 cut(s)	59, 440, 443, 446, 450, 783
AclWI	GGATC	2 cut(s)	62, 75
AcoI	YGGCCR	3 cut(s)	447, 637, 802
AcsI	RAATTY	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	2 cut(s)	181, 736
AfiI	CCNNNNNNNGG	3 cut(s)	64, 530, 680
AgsI	TTSAA	3 cut(s)	128, 195, 201
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	6 cut(s)	91, 172, 354, 510, 826, 844
AluI	AGCT	6 cut(s)	91, 172, 354, 510, 826, 844
AlwI	GGATC	2 cut(s)	62, 75
AoxI	GGCC	3 cut(s)	447, 637, 802
ApeKI	GCWGC	4 cut(s)	61, 282, 302, 692
ApoI	RAATTY	1 cut(s)	700
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	145, 302
AvaII	GGWCC	1 cut(s)	645
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BalI	TGGCCA	2 cut(s)	639, 804
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	48, 294, 314, 704
BccI	CCATC	2 cut(s)	424, 486
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	3 cut(s)	106, 292, 664
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	7 cut(s)	12, 92, 167, 177, 183, 404, 588
BfmI	CTRYAG	3 cut(s)	27, 62, 349
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	9 cut(s)	62, 283, 303, 441, 444, 447, 450, 693, 784
BlsI	GCNGC	9 cut(s)	63, 284, 304, 442, 445, 448, 451, 694, 785
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	3 cut(s)	6, 69, 535
BmrFI	CCNGG	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	634, 824
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	286, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 530, 680
Bse1I	ACTGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	286, 741
BseLI	CCNNNNNNNGG	3 cut(s)	64, 530, 680
BseNI	ACTGG	1 cut(s)	693
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	4 cut(s)	48, 294, 314, 704
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	449, 639, 804
BshNI	GGYRCC	1 cut(s)	533
BsiEI	CGRYCG	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	3 cut(s)	64, 530, 680
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	3 cut(s)	449, 639, 804
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
BspACI	CCGC	6 cut(s)	59, 440, 443, 446, 450, 783
BspANI	GGCC	3 cut(s)	449, 639, 804
BspLI	GGNNCC	3 cut(s)	6, 69, 535
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	2 cut(s)	62, 75
BspT107I	GGYRCC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	693
BssECI	CCNNGG	2 cut(s)	286, 741
BssMI	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	151, 742
Bst6I	CTCTTC	2 cut(s)	123, 531
BstACI	GRCGYC	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	741
BstEII	GGTNACC	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	6 cut(s)	70, 109, 166, 277, 295, 667
BstMBI	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 446, 449
BstNI	CCWGG	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	3 cut(s)	27, 62, 349
BstV1I	GCAGC	4 cut(s)	48, 294, 314, 704
BstX2I	RGATCY	2 cut(s)	67, 163
BstYI	RGATCY	2 cut(s)	67, 163
BstZI	CGGCCG	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	449, 639, 804
BtgI	CCRYGG	1 cut(s)	741
CciNI	GCGGCCGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	645
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	180, 735
CviAII	CATG	3 cut(s)	324, 530, 757
CviQI	GTAC	2 cut(s)	180, 735
DpnI	GATC	6 cut(s)	69, 108, 165, 276, 294, 666
DpnII	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
EaeI	YGGCCR	3 cut(s)	447, 637, 802
EagI	CGGCCG	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	123, 531
EarI	CTCTTC	2 cut(s)	123, 531
EclXI	CGGCCG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	645
Eco52I	CGGCCG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	645
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	327, 533, 760
FaiI	YATR	6 cut(s)	325, 531, 540, 582, 627, 758
FalI	AAGNNNNNCTT	2 cut(s)	815, 847
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	3 cut(s)	323, 529, 756
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	3 cut(s)	106, 292, 664
Fnu4HI	GCNGC	9 cut(s)	62, 283, 303, 441, 444, 447, 450, 693, 784
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	9 cut(s)	62, 283, 303, 441, 444, 447, 450, 693, 784
FspBI	CTAG	7 cut(s)	12, 92, 167, 177, 183, 404, 588
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	9 cut(s)	62, 283, 303, 441, 444, 447, 450, 693, 784
HaeIII	GGCC	3 cut(s)	449, 639, 804
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	3 cut(s)	327, 533, 760
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	136, 191, 239, 400, 577
HphI	GGTGA	2 cut(s)	145, 302
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	3 cut(s)	268, 489, 617
Hpy188III	TCNNGA	3 cut(s)	110, 167, 651
Hpy8I	GTNNAC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	151, 742
HpyCH4V	TGCA	4 cut(s)	64, 247, 327, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 446, 449
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	327, 533, 760
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	3 cut(s)	106, 292, 664
Kzo9I	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
Lsp1109I	GCAGC	4 cut(s)	48, 294, 314, 704
MaeI	CTAG	7 cut(s)	12, 92, 167, 177, 183, 404, 588
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	6 cut(s)	69, 108, 165, 276, 294, 666
MboI	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
MboII	GAAGA	6 cut(s)	97, 140, 518, 759, 824, 832
MflI	RGATCY	2 cut(s)	67, 163
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	2 cut(s)	639, 804
MluCI	AATT	1 cut(s)	700
MluNI	TGGCCA	2 cut(s)	639, 804
MlyI	GAGTC	2 cut(s)	233, 394
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	2 cut(s)	639, 804
MscI	TGGCCA	2 cut(s)	639, 804
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	2 cut(s)	639, 804
MspA1I	CMGCKG	3 cut(s)	61, 440, 452
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	440, 446, 449
NdeII	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
NlaIII	CATG	3 cut(s)	327, 533, 760
NlaIV	GGNNCC	3 cut(s)	6, 69, 535
NotI	GCGGCCGC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	136, 191, 577
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	9 cut(s)	63, 284, 304, 442, 445, 448, 451, 694, 785
PleI	GAGTC	2 cut(s)	233, 394
PpsI	GAGTC	2 cut(s)	233, 394
PpuMI	RGGWCCY	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	6, 69, 535
PspPI	GGNCC	1 cut(s)	645
PspPPI	RGGWCCY	1 cut(s)	645
PsrI	GAACNNNNNNTAC	4 cut(s)	21, 53, 482, 514
PstI	CTGCAG	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	67, 163
RsaI	GTAC	2 cut(s)	181, 736
RsaNI	GTAC	2 cut(s)	180, 735
RseI	CAYNNNNRTG	1 cut(s)	378
SatI	GCNGC	9 cut(s)	62, 283, 303, 441, 444, 447, 450, 693, 784
Sau3AI	GATC	6 cut(s)	67, 106, 163, 274, 292, 664
Sau96I	GGNCC	1 cut(s)	645
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	2 cut(s)	233, 394
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	216
SfcI	CTRYAG	3 cut(s)	27, 62, 349
SinI	GGWCC	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	649, 839
SmoI	CTYRAG	2 cut(s)	649, 839
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	1 cut(s)	700
SsiI	CCGC	6 cut(s)	59, 440, 443, 446, 450, 783
SspMI	CTAG	7 cut(s)	12, 92, 167, 177, 183, 404, 588
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	151, 742
TaqI	TCGA	3 cut(s)	102, 237, 506
TasI	AATT	1 cut(s)	700
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	5 cut(s)	443, 446, 449, 452, 786
TfiI	GAWTC	3 cut(s)	136, 191, 577
TseI	GCWGC	4 cut(s)	61, 282, 302, 692
TspDTI	ATGAA	4 cut(s)	249, 518, 569, 833
TspGWI	ACGGA	1 cut(s)	129
Van91I	CCANNNNNTGG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	645
XapI	RAATTY	1 cut(s)	700
XbaI	TCTAGA	1 cut(s)	166
XspI	CTAG	7 cut(s)	12, 92, 167, 177, 183, 404, 588
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.