Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Forward (+)

8687188 .. 8688415

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCAAGATTCTCTAAACCAGAGCATCGAAGACGAAGAAAGAGACGTTCATAATTCTAGTCACGAACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACATCCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCAAAGAACTTTCTATAGCTCACAAGCACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAACGTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCCACGGACAGTACAACAACCATAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACAAGCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCCATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAATGGATAATTTTCATCATCATCATCATCAGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCCAAGCAACACAGGACGGGTTCTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAAAGGATTGTTGTTAAGTACAAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.35

Weight (kDa)

6.39

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AclI	AACGTT	1 cut(s)	263
AclWI	GGATC	2 cut(s)	370, 383
AcsI	RAATTY	2 cut(s)	488, 553
AcuI	CTGAAG	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	353, 658
AfiI	CCNNNNNNNGG	2 cut(s)	344, 482
AgsI	TTSAA	2 cut(s)	12, 623
AluBI	AGCT	5 cut(s)	178, 216, 305, 403, 703
AluI	AGCT	5 cut(s)	178, 216, 305, 403, 703
Alw26I	GTCTC	2 cut(s)	75, 630
AlwI	GGATC	2 cut(s)	370, 383
ApeKI	GCWGC	2 cut(s)	290, 676
ApoI	RAATTY	2 cut(s)	488, 553
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	227, 603
AvaII	GGWCC	1 cut(s)	561
BamHI	GGATCC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	302, 688
BccI	CCATC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	75, 630
BfaI	CTAG	2 cut(s)	96, 602
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	2 cut(s)	291, 677
BlsI	GCNGC	2 cut(s)	292, 678
Bme18I	GGWCC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	2 cut(s)	377, 543
BmsI	GCATC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	683
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 482
Bse1I	ACTGG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	3 cut(s)	23, 161, 313
BseLI	CCNNNNNNNGG	2 cut(s)	344, 482
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	302, 688
BshVI	ATCGAT	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	344, 482
BsmAI	GTCTC	2 cut(s)	75, 630
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	375, 441, 466
BspCNI	CTCAG	1 cut(s)	314
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	377, 543
BspPI	GGATC	2 cut(s)	370, 383
BspQI	GCTCTTC	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	375, 441, 466
Bst4CI	ACNGT	3 cut(s)	323, 351, 561
Bst6I	CTCTTC	2 cut(s)	266, 666
BstDEI	CTNAG	2 cut(s)	301, 404
BstDSI	CCRYGG	1 cut(s)	343
BstEII	GGTNACC	2 cut(s)	233, 609
BstF5I	GGATG	3 cut(s)	23, 161, 313
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	378, 444, 469
BstMAI	GTCTC	2 cut(s)	75, 630
BstMBI	GATC	3 cut(s)	375, 441, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstPI	GGTNACC	2 cut(s)	233, 609
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	302, 688
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
Bsu15I	ATCGAT	1 cut(s)	573
BsuTUI	ATCGAT	1 cut(s)	573
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	23, 161, 313
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	561
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	2 cut(s)	14, 282
Csp6I	GTAC	2 cut(s)	352, 657
CviAII	CATG	2 cut(s)	186, 668
CviQI	GTAC	2 cut(s)	352, 657
DdeI	CTNAG	2 cut(s)	301, 404
DpnI	GATC	3 cut(s)	377, 443, 468
DpnII	GATC	3 cut(s)	375, 441, 466
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	266, 666
EarI	CTCTTC	2 cut(s)	266, 666
Eco47I	GGWCC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	2 cut(s)	233, 609
EcoO65I	GGTNACC	2 cut(s)	233, 609
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	189, 671
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	2 cut(s)	185, 667
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	291, 677
FokI	GGATG	3 cut(s)	10, 148, 300
Fsp4HI	GCNGC	2 cut(s)	291, 677
FspBI	CTAG	2 cut(s)	96, 602
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	291, 677
HgaI	GACGC	2 cut(s)	14, 282
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	2 cut(s)	189, 671
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	176, 701
HinfI	GANTC	3 cut(s)	47, 152, 616
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	227, 603
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	441, 528
Hpy188III	TCNNGA	6 cut(s)	44, 101, 453, 602, 620, 668
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	555, 599
HpyCH4III	ACNGT	3 cut(s)	323, 351, 561
HpyCH4IV	ACGT	3 cut(s)	84, 263, 283
HpyCH4V	TGCA	2 cut(s)	123, 189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	2 cut(s)	301, 404
HpySE526I	ACGT	3 cut(s)	84, 263, 283
Hsp92II	CATG	2 cut(s)	189, 671
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	375, 441, 466
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	547
LpnPI	CCDG	4 cut(s)	71, 433, 489, 576
Lsp1109I	GCAGC	2 cut(s)	302, 688
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	96, 602
MaeII	ACGT	3 cut(s)	84, 263, 283
MaeIII	GTNAC	4 cut(s)	98, 233, 428, 609
MalI	GATC	3 cut(s)	377, 443, 468
MboI	GATC	3 cut(s)	375, 441, 466
MboII	GAAGA	4 cut(s)	80, 86, 283, 683
MflI	RGATCY	1 cut(s)	375
MluCI	AATT	4 cut(s)	91, 488, 505, 553
MlyI	GAGTC	1 cut(s)	610
MnlI	CCTC	5 cut(s)	31, 269, 310, 505, 707
MseI	TTAA	2 cut(s)	147, 653
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	375, 441, 466
NlaIII	CATG	2 cut(s)	189, 671
NlaIV	GGNNCC	2 cut(s)	377, 543
NmuCI	GTSAC	4 cut(s)	98, 233, 428, 609
PagI	TCATGA	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	666
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	47, 152
PkrI	GCNGC	2 cut(s)	292, 678
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	263
PspEI	GGTNACC	2 cut(s)	233, 609
PspN4I	GGNNCC	2 cut(s)	377, 543
PspPI	GGNCC	1 cut(s)	561
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	2 cut(s)	353, 658
RsaNI	GTAC	2 cut(s)	352, 657
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	147, 653
SatI	GCNGC	2 cut(s)	291, 677
Sau3AI	GATC	3 cut(s)	375, 441, 466
Sau96I	GGNCC	1 cut(s)	561
SchI	GAGTC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	4 cut(s)	91, 488, 505, 553
SspMI	CTAG	2 cut(s)	96, 602
TaaI	ACNGT	3 cut(s)	323, 351, 561
TaiI	ACGT	3 cut(s)	87, 266, 286
TaqI	TCGA	4 cut(s)	66, 117, 389, 573
TasI	AATT	4 cut(s)	91, 488, 505, 553
TatI	WGTACW	2 cut(s)	351, 656
TfiI	GAWTC	2 cut(s)	47, 152
Tru1I	TTAA	2 cut(s)	147, 653
Tru9I	TTAA	2 cut(s)	147, 653
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	4 cut(s)	98, 233, 428, 609
TseI	GCWGC	2 cut(s)	290, 676
Tsp45I	GTSAC	4 cut(s)	98, 233, 428, 609
TspDTI	ATGAA	3 cut(s)	77, 500, 684
TspGWI	ACGGA	2 cut(s)	360, 648
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	561
XapI	RAATTY	2 cut(s)	488, 553
XbaI	TCTAGA	1 cut(s)	601
XspI	CTAG	2 cut(s)	96, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.