Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Reverse (-)

9292835 .. 9294174

Gene Structure 1340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAACCAACTAGGAATGTTGTTTCTATACCAGAGGCTCCTCCGAGTCCAAACACCCCACTGCAGGATCCAAACGAAAGCAAGAAGAAACTAGTGATACTTGAGGATCAAGACGAAGAGGAAATTGAAGAGGTGAATCGTCCCAATACTGTCCTGTTATTAGATCTAGAGCTTTCTAATACTAGTAAGGATTCAACTTCAATCAGTAGTGGGTTCAACCCAGAACTCAATCTCATCGATAGTCTACAAATGGGTGGTTCATCATCAGAAACAGATCAAAGCAGCCCTGGTGATCAAGGGGCAGCAGAGCCAAGAGTTTTCTCATGCAACTATTGTCAAAGAAAGTTCTACAGCTCACAAGCACTTGGAGGACACCAAAATGCACACAAAAGAGAGAGGACTCTGGCAAAGAGAGGACAAAGGCAGTTGATGGCGTCAACAGCAGCAGCCGCTGGTTTTGGTGGTTACCCTTACTTCCATCATCACAACCACCCTTACTTTTCGAGCATGGCTTCTCTGCCTCTTCATGGTGCCTATAACAACAAGTCTTTGGATATTCAGGTCCACTCAATGATTCACAAGCCTAGTGGTAGTGGTAGTGGTATTGGGTTTGGAAGTCCGTATGGAAATCGTGGGCACAAGTCATCAAGACCCATTTTTGATCAACAACCAGCGATTGGAAAACTGGCACCACAGAATTTTCAAACCACATCATCATCAAGAGCTAGTAGTACCAGTAGTGTGGGAAGATTTGACATGGCAAATGTTGGTTGGTTGGAAAACGGCAGTCGTTTCAGGAGTGGTCAACACGAAGAAATGAAGAACCTAGACTTGTCCCTCAAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.78

Weight (kDa)

6.6

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	530, 688
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	3 cut(s)	62, 75, 114
AcsI	RAATTY	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	3 cut(s)	64, 527, 677
AgsI	TTSAA	5 cut(s)	128, 195, 201, 217, 704
AhlI	ACTAGT	2 cut(s)	91, 182
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	172, 354, 725, 844
AluI	AGCT	4 cut(s)	172, 354, 725, 844
AlwI	GGATC	3 cut(s)	62, 75, 114
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	4 cut(s)	282, 302, 443, 446
ApoI	RAATTY	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	145, 302
AvaII	GGWCC	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	2 cut(s)	530, 688
BbvI	GCAGC	4 cut(s)	294, 314, 455, 458
BccI	CCATC	2 cut(s)	424, 486
BceAI	ACGGC	1 cut(s)	799
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	2 cut(s)	292, 661
BcuI	ACTAGT	2 cut(s)	91, 182
BfaI	CTAG	8 cut(s)	12, 92, 167, 183, 585, 726, 827, 847
BfmI	CTRYAG	2 cut(s)	62, 349
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
BlsI	GCNGC	5 cut(s)	284, 304, 445, 448, 451
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	5 cut(s)	6, 39, 69, 532, 690
BmrFI	CCNGG	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	122, 824
Bsa29I	ATCGAT	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 527, 677
Bse1I	ACTGG	2 cut(s)	690, 735
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	64, 527, 677
BseNI	ACTGG	2 cut(s)	690, 735
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	4 cut(s)	294, 314, 455, 458
BshNI	GGYRCC	2 cut(s)	530, 688
BshVI	ATCGAT	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	126, 820
BslI	CCNNNNNNNGG	3 cut(s)	64, 527, 677
BsmFI	GGGAC	2 cut(s)	126, 820
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
BspACI	CCGC	1 cut(s)	450
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	5 cut(s)	6, 39, 69, 532, 690
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	3 cut(s)	62, 75, 114
BspT107I	GGYRCC	2 cut(s)	530, 688
BsrI	ACTGG	2 cut(s)	690, 735
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	3 cut(s)	111, 123, 528
BstACI	GRCGYC	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	464
BstKTI	GATC	6 cut(s)	70, 109, 166, 277, 295, 664
BstMBI	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 449
BstNI	CCWGG	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	62, 349
BstSLI	GKGCMC	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	294, 314, 455, 458
BstX2I	RGATCY	2 cut(s)	67, 163
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	67, 163
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	562
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	732
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	4 cut(s)	324, 508, 527, 757
CviQI	GTAC	1 cut(s)	732
DpnI	GATC	6 cut(s)	69, 108, 165, 276, 294, 663
DpnII	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
Eam1104I	CTCTTC	3 cut(s)	111, 123, 528
EarI	CTCTTC	3 cut(s)	111, 123, 528
Eco47I	GGWCC	1 cut(s)	562
Eco91I	GGTNACC	1 cut(s)	464
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	327, 511, 530, 760
FaiI	YATR	7 cut(s)	29, 325, 509, 528, 537, 624, 758
FaqI	GGGAC	2 cut(s)	126, 820
FatI	CATG	4 cut(s)	323, 507, 526, 756
FbaI	TGATCA	2 cut(s)	292, 661
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
Fsp4HI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
FspBI	CTAG	8 cut(s)	12, 92, 167, 183, 585, 726, 827, 847
GluI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	327, 511, 530, 760
HincII	GTYRAC	2 cut(s)	438, 806
HindII	GTYRAC	2 cut(s)	438, 806
HinfI	GANTC	5 cut(s)	46, 136, 191, 400, 574
HphI	GGTGA	2 cut(s)	145, 302
Hpy166II	GTNNAC	4 cut(s)	245, 438, 565, 806
Hpy188I	TCNGA	2 cut(s)	45, 268
Hpy188III	TCNNGA	5 cut(s)	110, 167, 648, 720, 796
Hpy8I	GTNNAC	4 cut(s)	245, 438, 565, 806
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	3 cut(s)	64, 327, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 449
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	327, 511, 530, 760
Ksp22I	TGATCA	2 cut(s)	292, 661
Kzo9I	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	4 cut(s)	294, 314, 455, 458
MaeI	CTAG	8 cut(s)	12, 92, 167, 183, 585, 726, 827, 847
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	6 cut(s)	69, 108, 165, 276, 294, 663
MboI	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
MboII	GAAGA	7 cut(s)	97, 128, 140, 515, 759, 824, 832
MflI	RGATCY	2 cut(s)	67, 163
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	2 cut(s)	123, 697
MlyI	GAGTC	2 cut(s)	55, 394
MmeI	TCCRAC	1 cut(s)	756
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	440, 449
NdeII	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
NlaIII	CATG	4 cut(s)	327, 511, 530, 760
NlaIV	GGNNCC	5 cut(s)	6, 39, 69, 532, 690
PfeI	GAWTC	3 cut(s)	136, 191, 574
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	5 cut(s)	284, 304, 445, 448, 451
PleI	GAGTC	2 cut(s)	54, 394
PpsI	GAGTC	2 cut(s)	54, 394
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	5 cut(s)	6, 39, 69, 532, 690
PspPI	GGNCC	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	67, 163
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	1 cut(s)	378
SatI	GCNGC	5 cut(s)	283, 303, 444, 447, 450
Sau3AI	GATC	6 cut(s)	67, 106, 163, 274, 292, 661
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	2 cut(s)	55, 394
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	7 cut(s)	135, 174, 356, 564, 727, 828, 846
SfcI	CTRYAG	2 cut(s)	62, 349
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	101, 839
SmoI	CTYRAG	2 cut(s)	101, 839
SpeI	ACTAGT	2 cut(s)	91, 182
Sse9I	AATT	2 cut(s)	123, 697
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	8 cut(s)	12, 92, 167, 183, 585, 726, 827, 847
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	237, 503
TasI	AATT	2 cut(s)	123, 697
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	136, 191, 574
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	4 cut(s)	282, 302, 443, 446
TspDTI	ATGAA	3 cut(s)	249, 515, 833
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	697
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	8 cut(s)	12, 92, 167, 183, 585, 726, 827, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.