Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013967

Physical Location & Seq

Genomic Coordinates Reverse (-)

2587492 .. 2588334

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1037200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAACCGGCTAGAAATTCTGAAACAAATATCTTCTCAGTTGCAGAAGTTCCTCCATGTCCAAACACCCCACTTCAAGACCCAAAAGAAACCAAACAGAAACTAAGAGTTGAAGAAGATGAGGAGGCGATGAAAGATCAAGAAAAACAGAAGAAACCCAGCATCCGAATTGATCTAGAGGCTTCGGATAGTGATTCAAATCGCGGGTTCAGCTTTGATAATCCGGAACTCAATCTACTCGAATCCCTCGAAACGGGGTCGTCAGAAGGCACCACCACCACCACGACCACCGCCCTTGTTTCTGATGCAGCAGAGCCTAGGGTTTTCCCATGCAACTACTGTCAAAGAAAATTCTACAGCTCACAGGCGCTCGGAGGGCACCAGAATGCCCACAAACGAGAGAGAACCCTAGCAAAGAGAGGGCAGAGGATGTTGGGGTCCCACATAACGGCCTCAGCTGCAGGTTTTGGGTACCCTTATTACTCTAGTTTGGCTTCTCTGCCTCTCCATGGTGGTGCTTTTAGGGCACTGGACATTCAGGCTCACTCCATGATCCACAAGCCTAGTTCCATGATGCCTTCGTCTGCGATTCGGTTCGGAAGTTCTTATGGACATCGGAGTTTTAGGTCAAGACCAATTTTTGATCAGCAACCAACGGTCGGAAAGCTCGGAGTTGCAGCAGCTAGAGGTGGTGGTGGAGCTGGGAGGTTTGACGTGGCAAAGAGCAACATGGTTTCACAAGGCAACGAAGAAATTGGAAAATGTTGGTTGGGAAACGACAGTCGTTTCAAGAGTAGCAGTGATCAGGAGGAAATGAAGCTTGACTTGTCGCTCAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.64

Weight (kDa)

7.7

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10970 AT5G25160
fragaria_vesca	FvH4_2g40850
malus_domestica	MD08G1059200.v1.1 MD15G1037200.v1.1
prunus_persica	Prupe.1G391200_v2.0.a1
pyrus_communis	pycom08g04930
rosa_chinensis	RchiOBHm_Chr6g0299711
rosa_laevigata	RLG00000011394
rosa_multiflora	Rmu_sc0002895.1_g000012
rosa_roxburghii	Rroxscaffold_7G00168420
rosa_rugosa	Rorug06G0291700
rosa_samantha	Rh6AG402600 Rh6BG411200 Rh6CG417100 Rh6DG404100
rosa_wichuraiana	Rw6G035240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	3 cut(s)	269, 378, 471
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	2 cut(s)	204, 291
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	16, 350
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	4 cut(s)	253, 448, 509, 659
AgsI	TTSAA	4 cut(s)	77, 113, 198, 790
AjiI	CACGTC	1 cut(s)	715
AluBI	AGCT	8 cut(s)	213, 360, 458, 667, 683, 701, 820, 838
AluI	AGCT	8 cut(s)	213, 360, 458, 667, 683, 701, 820, 838
AlwI	GGATC	1 cut(s)	547
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	4 cut(s)	308, 458, 677, 680
ApoI	RAATTY	2 cut(s)	16, 350
Asp718I	GGTACC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	438
AvaII	GGWCC	1 cut(s)	438
AvrII	CCTAGG	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	381, 529
BanI	GGYRCC	3 cut(s)	269, 378, 471
BbvCI	CCTCAGC	1 cut(s)	454
BbvI	GCAGC	4 cut(s)	320, 445, 689, 692
BceAI	ACGGC	1 cut(s)	465
BclI	TGATCA	2 cut(s)	643, 802
BfaI	CTAG	7 cut(s)	12, 176, 318, 410, 486, 564, 684
BfmI	CTRYAG	2 cut(s)	355, 459
BfoI	RGCGCY	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	4 cut(s)	309, 459, 678, 681
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	4 cut(s)	310, 460, 679, 682
Bme18I	GGWCC	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	6 cut(s)	6, 271, 380, 439, 440, 473
BmsI	GCATC	3 cut(s)	171, 295, 564
Bpu10I	CCTNAGC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	818
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	317, 508
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 448, 509, 659
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	317, 508
BseGI	GGATG	2 cut(s)	162, 435
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	4 cut(s)	253, 448, 509, 659
BseMII	CTCAG	2 cut(s)	51, 468
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	2 cut(s)	381, 529
BseXI	GCAGC	4 cut(s)	320, 445, 689, 692
BseYI	CCCAGC	2 cut(s)	158, 701
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	3 cut(s)	269, 378, 471
BsiEI	CGRYCG	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	8, 224
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	4 cut(s)	253, 448, 509, 659
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	381, 529
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	136, 172, 552, 643, 802
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	204, 291
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	2 cut(s)	50, 467
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	6 cut(s)	6, 271, 380, 439, 440, 473
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	3 cut(s)	269, 378, 471
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	2 cut(s)	317, 508
BssMI	GATC	5 cut(s)	136, 172, 552, 643, 802
BssT1I	CCWWGG	2 cut(s)	317, 508
Bst4CI	ACNGT	3 cut(s)	341, 658, 782
BstDEI	CTNAG	3 cut(s)	37, 104, 454
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	162, 435
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	5 cut(s)	139, 175, 555, 646, 805
BstMBI	GATC	5 cut(s)	136, 172, 552, 643, 802
BstMCI	CGRYCG	1 cut(s)	660
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 376, 458, 524
BstSFI	CTRYAG	2 cut(s)	355, 459
BstSLI	GKGCMC	2 cut(s)	381, 529
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	320, 445, 689, 692
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	508
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	162, 435
BtsI	GCAGTG	1 cut(s)	805
BtsIMutI	CAGTG	2 cut(s)	527, 805
BveI	ACCTGC	1 cut(s)	452
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	472
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	6 cut(s)	57, 330, 509, 550, 571, 730
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	37, 104, 454
DpnI	GATC	5 cut(s)	138, 174, 554, 645, 804
DpnII	GATC	5 cut(s)	136, 172, 552, 643, 802
Eco130I	CCWWGG	2 cut(s)	317, 508
Eco47I	GGWCC	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	317, 508
ErhI	CCWWGG	2 cut(s)	317, 508
FaeI	CATG	6 cut(s)	60, 333, 512, 553, 574, 733
FaiI	YATR	8 cut(s)	58, 331, 446, 510, 551, 572, 609, 731
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	6 cut(s)	56, 329, 508, 549, 570, 729
FauI	CCCGC	1 cut(s)	197
FbaI	TGATCA	2 cut(s)	643, 802
Fnu4HI	GCNGC	4 cut(s)	309, 459, 678, 681
FokI	GGATG	2 cut(s)	149, 442
Fsp4HI	GCNGC	4 cut(s)	309, 459, 678, 681
FspBI	CTAG	7 cut(s)	12, 176, 318, 410, 486, 564, 684
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	4 cut(s)	309, 459, 678, 681
GsaI	CCCAGC	2 cut(s)	162, 705
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	2 cut(s)	8, 224
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	60, 333, 512, 553, 574, 733
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	3 cut(s)	194, 242, 589
HpaII	CCGG	2 cut(s)	8, 224
Hpy188III	TCNNGA	7 cut(s)	77, 140, 176, 224, 630, 790, 806
HpyAV	CCTTC	2 cut(s)	260, 588
HpyCH4III	ACNGT	3 cut(s)	341, 658, 782
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	5 cut(s)	44, 308, 333, 461, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 376, 458, 524
HpyF3I	CTNAG	3 cut(s)	37, 104, 454
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	6 cut(s)	60, 333, 512, 553, 574, 733
HspAI	GCGC	1 cut(s)	368
KflI	GGGWCCC	1 cut(s)	438
Kpn2I	TCCGGA	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	475
Ksp22I	TGATCA	2 cut(s)	643, 802
Kzo9I	GATC	5 cut(s)	136, 172, 552, 643, 802
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	4 cut(s)	320, 445, 689, 692
LweI	GCATC	3 cut(s)	171, 295, 564
MaeI	CTAG	7 cut(s)	12, 176, 318, 410, 486, 564, 684
MaeII	ACGT	1 cut(s)	714
MalI	GATC	5 cut(s)	138, 174, 554, 645, 804
MboI	GATC	5 cut(s)	136, 172, 552, 643, 802
MboII	GAAGA	5 cut(s)	25, 125, 128, 163, 761
MhlI	GDGCHC	2 cut(s)	381, 529
MluCI	AATT	5 cut(s)	16, 168, 350, 636, 753
MmeI	TCCRAC	1 cut(s)	640
MroI	TCCGGA	1 cut(s)	223
MslI	CAYNNNNRTG	2 cut(s)	384, 513
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	2 cut(s)	8, 224
Mva1269I	GAATGC	1 cut(s)	391
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	210, 376, 458, 524
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	5 cut(s)	136, 172, 552, 643, 802
NlaIII	CATG	6 cut(s)	60, 333, 512, 553, 574, 733
NlaIV	GGNNCC	6 cut(s)	6, 271, 380, 439, 440, 473
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	194, 242, 589
PkrI	GCNGC	4 cut(s)	310, 460, 679, 682
PpuMI	RGGWCCY	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	158, 701
PspN4I	GGNNCC	6 cut(s)	6, 271, 380, 439, 440, 473
PspPI	GGNCC	1 cut(s)	438
PspPPI	RGGWCCY	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	219, 251
PstI	CTGCAG	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	2 cut(s)	384, 513
SatI	GCNGC	4 cut(s)	309, 459, 678, 681
Sau3AI	GATC	5 cut(s)	136, 172, 552, 643, 802
Sau96I	GGNCC	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	381, 529
SfaNI	GCATC	3 cut(s)	171, 295, 564
SfcI	CTRYAG	2 cut(s)	355, 459
SinI	GGWCC	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	384, 513
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	5 cut(s)	16, 168, 350, 636, 753
SsiI	CCGC	2 cut(s)	204, 291
SspMI	CTAG	7 cut(s)	12, 176, 318, 410, 486, 564, 684
StyI	CCWWGG	2 cut(s)	317, 508
TaaI	ACNGT	3 cut(s)	341, 658, 782
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	240, 249
TasI	AATT	5 cut(s)	16, 168, 350, 636, 753
TfiI	GAWTC	3 cut(s)	194, 242, 589
TscAI	CASTG	2 cut(s)	534, 805
TseI	GCWGC	4 cut(s)	308, 458, 677, 680
TspDTI	ATGAA	2 cut(s)	146, 830
TspRI	CASTG	2 cut(s)	534, 805
VpaK11BI	GGWCC	1 cut(s)	438
XapI	RAATTY	2 cut(s)	16, 350
XbaI	TCTAGA	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	7 cut(s)	12, 176, 318, 410, 486, 564, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.