Rw6G025580
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006216
Physical Location & Seq
Forward (+)
48953157 .. 48956587
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025580.1

Sequence Viewer

Length: 1320 bp
ATGAGTTGGAGCCACCCAGATATTTCATTGGAAGAATTCATGAAACTGGTTAAAGGGTTCGTCGATATACTGATTCTCCTTTCTGGGTACCAATCCTCTGGTCGTCTTGCTCACTGGGACTCCCAGAACATCAAGAAGGCCTTCCAATGGGGCCTCTTCTTCGAAAATTTTCTGGAGAGCTTTAGCAGCTCTGATGATTATGTGGACTCTGTGATGGAACTTGATGGGGCTATTTCTGAAATGACATCTGCTGCTTCTTTCCCCAAGGGCCTTGCACATATGTCAACTGCTACTCTTGCTACCGCGCGGCGTTTTGTGTTAGAGCATCTCATCCGTAGTTTATCTTTGAGAGATGCGCATCTGCGAGCTTTGCTGACGGCGACTGTGGAGATGGATCTTGAGGAGCTATCGGAAAGTGAGCATGATTTTCTTAATGTGTATCTCAACAAGTTGAAGCTGGAGAATACAGTCAATACACCAATTCGGCAAGGCATTGAGTCAGTTAGAAAGTTTGGAGATTGCGGTGGTAATGGTTTGACGAAATACGCGGTTCAAGGGCTCTTGAAGAGGTGGTCTGTGGTTTCTTTGATATCAACGGTTGAGTCAGGCTTAGACGTTCTTTCTCGAAGTGTCAGACGTAGCAGTTGGAGTGAGTTTGATGATAACTTATTGAAAGAGCAGCTGGAGCATGAAAATACTCCAGTGACTGTAGACTGGTTGGTTGGTGCTCTGACATGGAACCGCTGGAAATCAAATAGCCTCTCTTATTTTCTTGATAAGAGAACTGTTCAATTAGTCTCCGGTGCCAGCATGGTATTTTCTACCCCTAAGATTCAATGGGTACAAACTTTTCAACTGTTGAACTTCAGTGATTTAGCAGGAGGCAGTGATAATGGTTTGTGCGAAACAATTGAGCTCATGTTACTAGGATGCATTGCAAGCAGATGGACTTCTGTAATTGAGCATTTGGTGTCAGTTTCTTATGATTCCCGCACTGTTTTGGAGCAATATCACGAAGTGTGCAACTTACTCCATGGAAGATCTACTACTCTTAGATCTAAACAGGAAGCAATCAGCCAGGCAACTGACATTCTTGAGTATCTGAGTGGAATGCTGGATGGCCAGGTGCATCTGTTATGGAAGATATGCCCAGCTCTTGGAGCCGTTGCAATTCCATCCTGGTCACCTTTGTTTAGACTTTATTTGAGTGAAATTCAGATTCAAGTCAGGGGAGATCTTTCAACAATGAGATGTTGTGACTGTGCTCATAATAGGAAGGAGCACACTGACTGTGAGTATATTGAATTAACTCCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

439

Amino Acids

49.57

Weight (kDa)

5.35

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 131 8.3e-10 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 2 cut(s) 87, 803
AccB7I CCANNNNNTGG 1 cut(s) 1157
AccI GTMKAC 1 cut(s) 711
AccII CGCG 3 cut(s) 305, 307, 548
AciI CCGC 6 cut(s) 303, 307, 522, 548, 742, 991
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 1120
AcsI RAATTY 3 cut(s) 35, 166, 1212
AcuI CTGAAG 1 cut(s) 850
AdeI CACNNNGTG 1 cut(s) 1018
AfaI GTAC 2 cut(s) 89, 843
AfiI CCNNNNNNNGG 2 cut(s) 147, 1157
AjnI CCWGG 3 cut(s) 1077, 1122, 1178
AluBI AGCT 8 cut(s) 180, 189, 368, 406, 457, 682, 916, 1154
AluI AGCT 8 cut(s) 180, 189, 368, 406, 457, 682, 916, 1154
Alw21I GWGCWC 4 cut(s) 730, 918, 1267, 1284
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 4 cut(s) 138, 151, 268, 1120
ApeKI GCWGC 3 cut(s) 186, 251, 679
ApoI RAATTY 3 cut(s) 35, 166, 1212
Asp700I GAANNNNTTC 2 cut(s) 140, 168
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 307, 358
AspS9I GGNCC 2 cut(s) 151, 268
AsuHPI GGTGA 1 cut(s) 1176
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1122
BanI GGYRCC 2 cut(s) 87, 803
BanII GRGCYC 2 cut(s) 561, 918
BarI GAAGNNNNNNTAC 2 cut(s) 1030, 1062
Bbv12I GWGCWC 4 cut(s) 730, 918, 1267, 1284
BbvI GCAGC 3 cut(s) 198, 238, 691
BccI CCATC 6 cut(s) 208, 218, 385, 939, 1112, 1183
BceAI ACGGC 2 cut(s) 393, 1148
BciT130I CCWGG 3 cut(s) 1079, 1124, 1180
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 708
BglII AGATCT 3 cut(s) 1040, 1055, 1234
BisI GCNGC 4 cut(s) 187, 252, 308, 680
BlsI GCNGC 4 cut(s) 188, 253, 309, 681
Bme1390I CCNGG 3 cut(s) 1079, 1124, 1180
BmgT120I GGNCC 2 cut(s) 151, 268
BmiI GGNNCC 6 cut(s) 11, 89, 152, 740, 805, 1162
BmrFI CCNGG 3 cut(s) 1079, 1124, 1180
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 5 cut(s) 334, 343, 367, 920, 1138
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 4 cut(s) 194, 479, 684, 704
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 419, 1115
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 264, 1033
BsaWI WCCGGW 1 cut(s) 800
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1157
Bse1I ACTGG 4 cut(s) 51, 119, 701, 719
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 3 cut(s) 1079, 1124, 1180
BseDI CCNNGG 2 cut(s) 264, 1033
BseGI GGATG 4 cut(s) 330, 935, 1123, 1175
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 147, 1157
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 1 cut(s) 1094
BseNI ACTGG 4 cut(s) 51, 119, 701, 719
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 198, 238, 691
BseYI CCCAGC 1 cut(s) 1150
Bsh1236I CGCG 3 cut(s) 305, 307, 548
BshFI GGCC 4 cut(s) 140, 153, 270, 1122
BshNI GGYRCC 2 cut(s) 87, 803
BsiHKAI GWGCWC 4 cut(s) 730, 918, 1267, 1284
BsiSI CCGG 1 cut(s) 801
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 147, 1157
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1116
BsnI GGCC 4 cut(s) 140, 153, 270, 1122
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 5 cut(s) 561, 730, 918, 1267, 1284
Bsp143I GATC 4 cut(s) 394, 1040, 1055, 1234
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 6 cut(s) 303, 307, 522, 548, 742, 991
BspANI GGCC 4 cut(s) 140, 153, 270, 1122
BspCNI CTCAG 1 cut(s) 1095
BspFNI CGCG 3 cut(s) 305, 307, 548
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 6 cut(s) 11, 89, 152, 740, 805, 1162
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 87, 803
BsrDI GCAATG 1 cut(s) 933
BsrI ACTGG 4 cut(s) 51, 119, 701, 719
BssECI CCNNGG 2 cut(s) 264, 1033
BssMI GATC 4 cut(s) 394, 1040, 1055, 1234
BssT1I CCWWGG 2 cut(s) 264, 1033
Bst2UI CCWGG 3 cut(s) 1079, 1124, 1180
Bst4CI ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1262, 1292
Bst6I CTCTTC 2 cut(s) 161, 560
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 366, 808, 940
BstDEI CTNAG 4 cut(s) 610, 828, 1052, 1103
BstDSI CCRYGG 1 cut(s) 1033
BstEII GGTNACC 1 cut(s) 1182
BstF5I GGATG 4 cut(s) 330, 935, 1123, 1175
BstFNI CGCG 3 cut(s) 305, 307, 548
BstHHI GCGC 2 cut(s) 307, 358
BstKTI GATC 4 cut(s) 397, 1043, 1058, 1237
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 4 cut(s) 394, 1040, 1055, 1234
BstMWI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1160
BstNI CCWGG 3 cut(s) 1079, 1124, 1180
BstPI GGTNACC 1 cut(s) 1182
BstSCI CCNGG 3 cut(s) 1077, 1122, 1178
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 3 cut(s) 305, 307, 548
BstV1I GCAGC 3 cut(s) 198, 238, 691
BstX2I RGATCY 4 cut(s) 394, 1040, 1055, 1234
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 4 cut(s) 394, 1040, 1055, 1234
BsuRI GGCC 4 cut(s) 140, 153, 270, 1122
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 4 cut(s) 330, 935, 1123, 1175
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 6 cut(s) 112, 708, 874, 892, 993, 1284
Cac8I GCNNGC 3 cut(s) 366, 808, 940
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 39
CfoI GCGC 2 cut(s) 307, 358
Cfr13I GGNCC 2 cut(s) 151, 268
Csp6I GTAC 2 cut(s) 88, 842
CviAII CATG 7 cut(s) 40, 422, 689, 735, 811, 919, 1034
CviQI GTAC 2 cut(s) 88, 842
DdeI CTNAG 4 cut(s) 610, 828, 1052, 1103
DpnI GATC 4 cut(s) 396, 1042, 1057, 1236
DpnII GATC 4 cut(s) 394, 1040, 1055, 1234
DraIII CACNNNGTG 1 cut(s) 1018
EaeI YGGCCR 1 cut(s) 1120
Eam1104I CTCTTC 2 cut(s) 161, 560
EarI CTCTTC 2 cut(s) 161, 560
Ecl136II GAGCTC 1 cut(s) 916
Eco130I CCWWGG 2 cut(s) 264, 1033
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 561, 918
Eco32I GATATC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 850
Eco91I GGTNACC 1 cut(s) 1182
EcoICRI GAGCTC 1 cut(s) 916
EcoO109I RGGNCCY 2 cut(s) 151, 268
EcoO65I GGTNACC 1 cut(s) 1182
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 1077, 1122, 1178
EcoRV GATATC 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 264, 1033
EcoT22I ATGCAT 1 cut(s) 935
EcoT38I GRGCYC 2 cut(s) 561, 918
ErhI CCWWGG 2 cut(s) 264, 1033
FaeI CATG 7 cut(s) 43, 425, 692, 738, 814, 922, 1037
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 39, 421, 688, 734, 810, 918, 1033
FauI CCCGC 1 cut(s) 998
FauNDI CATATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 4 cut(s) 187, 252, 308, 680
FokI GGATG 4 cut(s) 317, 942, 1130, 1162
FriOI GRGCYC 2 cut(s) 561, 918
Fsp4HI GCNGC 4 cut(s) 187, 252, 308, 680
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 1 cut(s) 926
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 2 cut(s) 306, 357
GluI GCNGC 4 cut(s) 187, 252, 308, 680
GsaI CCCAGC 1 cut(s) 1154
GsuI CTGGAG 4 cut(s) 194, 479, 684, 704
HaeIII GGCC 4 cut(s) 140, 153, 270, 1122
HapII CCGG 1 cut(s) 801
HhaI GCGC 2 cut(s) 307, 358
Hin1II CATG 7 cut(s) 43, 425, 692, 738, 814, 922, 1037
Hin6I GCGC 2 cut(s) 305, 356
HinP1I GCGC 2 cut(s) 305, 356
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 8 cut(s) 73, 119, 206, 497, 602, 832, 986, 1219
HpaII CCGG 1 cut(s) 801
HphI GGTGA 1 cut(s) 1176
Hpy166II GTNNAC 3 cut(s) 205, 285, 712
Hpy188I TCNGA 7 cut(s) 193, 238, 412, 635, 732, 1104, 1218
Hpy188III TCNNGA 9 cut(s) 40, 133, 173, 398, 562, 624, 773, 1013, 1094
Hpy8I GTNNAC 3 cut(s) 205, 285, 712
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 130, 151, 1270
HpyCH4III ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1262, 1292
HpyCH4IV ACGT 2 cut(s) 615, 637
HpyCH4V TGCA 6 cut(s) 275, 933, 938, 1023, 1129, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1160
HpyF3I CTNAG 4 cut(s) 610, 828, 1052, 1103
HpySE526I ACGT 2 cut(s) 615, 637
Hsp92II CATG 7 cut(s) 43, 425, 692, 738, 814, 922, 1037
HspAI GCGC 2 cut(s) 305, 356
KpnI GGTACC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 394, 1040, 1055, 1234
LmnI GCTCC 6 cut(s) 9, 403, 685, 1003, 1160, 1279
Lsp1109I GCAGC 3 cut(s) 198, 238, 691
LweI GCATC 5 cut(s) 334, 343, 367, 920, 1138
MaeI CTAG 1 cut(s) 926
MaeII ACGT 2 cut(s) 615, 637
MaeIII GTNAC 4 cut(s) 703, 921, 1182, 1256
MalI GATC 4 cut(s) 396, 1042, 1057, 1236
MboI GATC 4 cut(s) 394, 1040, 1055, 1234
MboII GAAGA 6 cut(s) 44, 148, 151, 577, 1050, 1153
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 4 cut(s) 394, 1040, 1055, 1234
MhlI GDGCHC 5 cut(s) 561, 730, 918, 1267, 1284
MlsI TGGCCA 1 cut(s) 1122
MluCI AATT 9 cut(s) 35, 166, 480, 791, 909, 957, 1170, 1212, 1304
MluNI TGGCCA 1 cut(s) 1122
MlyI GAGTC 4 cut(s) 113, 200, 506, 611
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 6 cut(s) 106, 164, 394, 561, 770, 875
Mox20I TGGCCA 1 cut(s) 1122
Mph1103I ATGCAT 1 cut(s) 935
MroXI GAANNNNTTC 2 cut(s) 140, 168
MscI TGGCCA 1 cut(s) 1122
MseI TTAA 3 cut(s) 51, 432, 1307
Msp20I TGGCCA 1 cut(s) 1122
MspA1I CMGCKG 2 cut(s) 682, 744
MspI CCGG 1 cut(s) 801
MspR9I CCNGG 3 cut(s) 1079, 1124, 1180
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 1116
MvaI CCWGG 3 cut(s) 1079, 1124, 1180
MvnI CGCG 3 cut(s) 305, 307, 548
MwoI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1160
NcoI CCATGG 1 cut(s) 1033
NdeI CATATG 1 cut(s) 279
NdeII GATC 4 cut(s) 394, 1040, 1055, 1234
NlaIII CATG 7 cut(s) 43, 425, 692, 738, 814, 922, 1037
NlaIV GGNNCC 6 cut(s) 11, 89, 152, 740, 805, 1162
NmuCI GTSAC 3 cut(s) 703, 1182, 1256
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 935
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 1 cut(s) 1116
PdmI GAANNNNTTC 2 cut(s) 140, 168
PfeI GAWTC 4 cut(s) 73, 832, 986, 1219
PflMI CCANNNNNTGG 1 cut(s) 1157
PkrI GCNGC 4 cut(s) 188, 253, 309, 681
PleI GAGTC 4 cut(s) 113, 200, 505, 610
PpsI GAGTC 4 cut(s) 113, 200, 505, 610
Psp124BI GAGCTC 1 cut(s) 918
Psp6I CCWGG 3 cut(s) 1077, 1122, 1178
PspEI GGTNACC 1 cut(s) 1182
PspFI CCCAGC 1 cut(s) 1150
PspGI CCWGG 3 cut(s) 1077, 1122, 1178
PspN4I GGNNCC 6 cut(s) 11, 89, 152, 740, 805, 1162
PspPI GGNCC 2 cut(s) 151, 268
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 4 cut(s) 394, 1040, 1055, 1234
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 2 cut(s) 89, 843
RsaNI GTAC 2 cut(s) 88, 842
SacI GAGCTC 1 cut(s) 918
SaqAI TTAA 3 cut(s) 51, 432, 1307
SatI GCNGC 4 cut(s) 187, 252, 308, 680
Sau3AI GATC 4 cut(s) 394, 1040, 1055, 1234
Sau96I GGNCC 2 cut(s) 151, 268
SchI GAGTC 4 cut(s) 113, 200, 506, 611
ScrFI CCNGG 3 cut(s) 1079, 1124, 1180
SduI GDGCHC 5 cut(s) 561, 730, 918, 1267, 1284
SfaNI GCATC 5 cut(s) 334, 343, 367, 920, 1138
SfcI CTRYAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 398, 1094
SmoI CTYRAG 2 cut(s) 398, 1094
Sse9I AATT 9 cut(s) 35, 166, 480, 791, 909, 957, 1170, 1212, 1304
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 6 cut(s) 303, 307, 522, 548, 742, 991
SspMI CTAG 1 cut(s) 926
SstI GAGCTC 1 cut(s) 918
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 1077, 1122, 1178
StyI CCWWGG 2 cut(s) 264, 1033
TaaI ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1262, 1292
TaiI ACGT 2 cut(s) 618, 640
TaqI TCGA 3 cut(s) 63, 162, 625
TasI AATT 9 cut(s) 35, 166, 480, 791, 909, 957, 1170, 1212, 1304
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 4 cut(s) 73, 832, 986, 1219
Tru1I TTAA 3 cut(s) 51, 432, 1307
Tru9I TTAA 3 cut(s) 51, 432, 1307
TscAI CASTG 6 cut(s) 119, 708, 874, 892, 1000, 1291
TseFI GTSAC 3 cut(s) 703, 1182, 1256
TseI GCWGC 3 cut(s) 186, 251, 679
Tsp45I GTSAC 3 cut(s) 703, 1182, 1256
TspDTI ATGAA 4 cut(s) 15, 28, 56, 705
TspGWI ACGGA 1 cut(s) 323
TspRI CASTG 6 cut(s) 119, 708, 874, 892, 1000, 1291
Van91I CCANNNNNTGG 1 cut(s) 1157
XapI RAATTY 3 cut(s) 35, 166, 1212
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 140, 168
XspI CTAG 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.