Rmu_sc0002520.1_g000006
MYB Family

Fanconi anemia group F protein (FANCF)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002520.1
Physical Location & Seq
Forward (+)
32256 .. 35367
3112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002520.1_g000006.1.cds

Sequence Viewer

Length: 1356 bp
atgagttggagccacccagatatttcattggaagaattcatgaaactggttaaagggttcgtcgatattctgattctgctttctgggtaccaatcctctggtcgtcttgctcactgggactcccagaatatcaagaaggccttccaatggggcctcttcttcgaaaatagctttagcagctctgatgattatgtggactctgtgatggaacttgatggggctatttctgaaatgacatctgctgcttctttccccaagggccttgcacatatgtcaactgctactcttgctaccgcgcggcgttttgtgttagagcatctcatccatagtttacctttgagagatgcgcatctgcgagctttgctgacggcgactgtggagatggatcttgaggagctatcggaaagtgagcatgattttcttaatgtgtatctcaacaagttgaagctggagaatacagtcaatacaccaattcagcaaggcattgagtcagttagaaagtttggagattgcggtggtaatggtttgacgaaatacgcggttcaagggctcttgaagaggtggtctgtggtttctttgatatcaacggttgagtcaggcttagacgttctttctcgaagtgtcagacatagcagttggagtgagtttgatgataacttattgaaagagcagctggagcatgaaaatactccagtgactgtagactggttggttggtgctctgacatggaaccgctggaaatcaaatagcctctcttattttcttgataagagaactgttcaattagtctccggtgccagcatggtattttctacccctaagattcaatgggtacaaacttttcaacggttgaacttcagtgatttagcaggaggcagtgataatggtttgtgcgaaacaattgagctcatgttactaggatgcattgcaagcagatggacttctgtaattgagcatttggtgtcagtttcttatgattcccgcactgttttggagcaatatcacgaagtgtgcaacttactccacggaagatctactactcttagatctaaacaggaagcaatcagccaggcaactgacattcttgagtatctgagtggaatgctggatggccaggtgcatctgttatggaagatatgcccagctcttggagccgttgcaattccatcctggtcacctttgtttagactttatttgagtgaaattcagattcaagtcaggggagatctttcaacaatgagatgttgtgactgtgctcataataggaaggagcacactgactgtgaacttgctcagagaatttggtgcctttatgtttttcatgtttatggctctcgtctaattgcccattgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

50.92

Weight (kDa)

5.71

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 3 cut(s) 87, 794, 1305
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 702
AccII CGCG 3 cut(s) 296, 298, 539
AciI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 1111
AcsI RAATTY 3 cut(s) 35, 1203, 1299
AcuI CTGAAG 1 cut(s) 841
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 2 cut(s) 89, 834
AfiI CCNNNNNNNGG 2 cut(s) 147, 1148
AjnI CCWGG 3 cut(s) 1068, 1113, 1169
AluBI AGCT 8 cut(s) 171, 180, 359, 397, 448, 673, 907, 1145
AluI AGCT 8 cut(s) 171, 180, 359, 397, 448, 673, 907, 1145
Alw21I GWGCWC 4 cut(s) 721, 909, 1258, 1275
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 1 cut(s) 393
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 4 cut(s) 138, 151, 259, 1111
ApeKI GCWGC 3 cut(s) 177, 242, 670
ApoI RAATTY 3 cut(s) 35, 1203, 1299
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 298, 349
AspS9I GGNCC 2 cut(s) 151, 259
AsuHPI GGTGA 1 cut(s) 1167
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 3 cut(s) 87, 794, 1305
BanII GRGCYC 2 cut(s) 552, 909
BarI GAAGNNNNNNTAC 2 cut(s) 1021, 1053
Bbv12I GWGCWC 4 cut(s) 721, 909, 1258, 1275
BbvI GCAGC 3 cut(s) 189, 229, 682
BccI CCATC 6 cut(s) 199, 209, 376, 930, 1103, 1174
BceAI ACGGC 2 cut(s) 384, 1139
BciT130I CCWGG 3 cut(s) 1070, 1115, 1171
BcoDI GTCTC 1 cut(s) 793
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 1 cut(s) 699
BglII AGATCT 3 cut(s) 1031, 1046, 1225
BisI GCNGC 4 cut(s) 178, 243, 299, 671
BlsI GCNGC 4 cut(s) 179, 244, 300, 672
Bme1390I CCNGG 3 cut(s) 1070, 1115, 1171
BmgT120I GGNCC 2 cut(s) 151, 259
BmiI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BmrFI CCNGG 3 cut(s) 1070, 1115, 1171
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 5 cut(s) 325, 334, 358, 911, 1129
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 3 cut(s) 470, 675, 695
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 410, 1106
BsaBI GATNNNNATC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 255, 1024
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1148
Bse1I ACTGG 4 cut(s) 51, 119, 692, 710
Bse3DI GCAATG 2 cut(s) 924, 1348
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 3 cut(s) 1070, 1115, 1171
BseDI CCNNGG 2 cut(s) 255, 1024
BseGI GGATG 4 cut(s) 321, 926, 1114, 1166
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 2 cut(s) 147, 1148
BseMI GCAATG 2 cut(s) 924, 1348
BseMII CTCAG 2 cut(s) 1085, 1307
BseNI ACTGG 4 cut(s) 51, 119, 692, 710
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 3 cut(s) 189, 229, 682
BseYI CCCAGC 1 cut(s) 1141
Bsh1236I CGCG 3 cut(s) 296, 298, 539
BshFI GGCC 4 cut(s) 140, 153, 261, 1113
BshNI GGYRCC 3 cut(s) 87, 794, 1305
BsiHKAI GWGCWC 4 cut(s) 721, 909, 1258, 1275
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 147, 1148
BsmAI GTCTC 1 cut(s) 793
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 4 cut(s) 140, 153, 261, 1113
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
Bsp143I GATC 4 cut(s) 385, 1031, 1046, 1225
BspACI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
BspANI GGCC 4 cut(s) 140, 153, 261, 1113
BspCNI CTCAG 2 cut(s) 1086, 1306
BspFNI CGCG 3 cut(s) 296, 298, 539
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 3 cut(s) 87, 794, 1305
BsrDI GCAATG 2 cut(s) 924, 1348
BsrI ACTGG 4 cut(s) 51, 119, 692, 710
BssECI CCNNGG 2 cut(s) 255, 1024
BssMI GATC 4 cut(s) 385, 1031, 1046, 1225
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 1070, 1115, 1171
Bst4CI ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
Bst6I CTCTTC 2 cut(s) 161, 551
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 357, 799, 931
BstDEI CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
BstDSI CCRYGG 1 cut(s) 1024
BstEII GGTNACC 1 cut(s) 1173
BstF5I GGATG 4 cut(s) 321, 926, 1114, 1166
BstFNI CGCG 3 cut(s) 296, 298, 539
BstHHI GCGC 2 cut(s) 298, 349
BstKTI GATC 4 cut(s) 388, 1034, 1049, 1228
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 4 cut(s) 385, 1031, 1046, 1225
BstMWI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
BstNI CCWGG 3 cut(s) 1070, 1115, 1171
BstPI GGTNACC 1 cut(s) 1173
BstSCI CCNGG 3 cut(s) 1068, 1113, 1169
BstSFI CTRYAG 1 cut(s) 699
BstUI CGCG 3 cut(s) 296, 298, 539
BstV1I GCAGC 3 cut(s) 189, 229, 682
BstX2I RGATCY 4 cut(s) 385, 1031, 1046, 1225
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 4 cut(s) 385, 1031, 1046, 1225
BsuRI GGCC 4 cut(s) 140, 153, 261, 1113
BtgI CCRYGG 1 cut(s) 1024
BtsCI GGATG 4 cut(s) 321, 926, 1114, 1166
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 6 cut(s) 112, 699, 865, 883, 984, 1275
Cac8I GCNNGC 3 cut(s) 357, 799, 931
CaiI CAGNNNCTG 1 cut(s) 698
CciI TCATGA 1 cut(s) 39
CfoI GCGC 2 cut(s) 298, 349
Cfr13I GGNCC 2 cut(s) 151, 259
Csp6I GTAC 2 cut(s) 88, 833
CviAII CATG 7 cut(s) 40, 413, 680, 726, 802, 910, 1322
CviQI GTAC 2 cut(s) 88, 833
DdeI CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
DpnI GATC 4 cut(s) 387, 1033, 1048, 1227
DpnII GATC 4 cut(s) 385, 1031, 1046, 1225
DraIII CACNNNGTG 1 cut(s) 1009
EaeI YGGCCR 1 cut(s) 1111
Eam1104I CTCTTC 2 cut(s) 161, 551
EarI CTCTTC 2 cut(s) 161, 551
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 552, 909
Eco32I GATATC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 841
Eco91I GGTNACC 1 cut(s) 1173
EcoICRI GAGCTC 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 151, 259
EcoO65I GGTNACC 1 cut(s) 1173
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 1068, 1113, 1169
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 552, 909
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 39, 412, 679, 725, 801, 909, 1321
FauI CCCGC 1 cut(s) 989
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 4 cut(s) 178, 243, 299, 671
FokI GGATG 4 cut(s) 308, 933, 1121, 1153
FriOI GRGCYC 2 cut(s) 552, 909
Fsp4HI GCNGC 4 cut(s) 178, 243, 299, 671
FspAI RTGCGCAY 1 cut(s) 348
FspBI CTAG 1 cut(s) 917
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 2 cut(s) 297, 348
GluI GCNGC 4 cut(s) 178, 243, 299, 671
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 3 cut(s) 470, 675, 695
HaeIII GGCC 4 cut(s) 140, 153, 261, 1113
HapII CCGG 1 cut(s) 792
HhaI GCGC 2 cut(s) 298, 349
Hin1II CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
Hin6I GCGC 2 cut(s) 296, 347
HinP1I GCGC 2 cut(s) 296, 347
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 8 cut(s) 73, 119, 197, 488, 593, 823, 977, 1210
HpaII CCGG 1 cut(s) 792
HphI GGTGA 1 cut(s) 1167
Hpy166II GTNNAC 5 cut(s) 196, 276, 332, 703, 1286
Hpy188I TCNGA 9 cut(s) 72, 184, 229, 403, 626, 723, 1095, 1209, 1296
Hpy188III TCNNGA 8 cut(s) 40, 133, 389, 553, 615, 764, 1004, 1085
Hpy8I GTNNAC 5 cut(s) 196, 276, 332, 703, 1286
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 130, 151, 1261
HpyCH4III ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 6 cut(s) 266, 924, 929, 1014, 1120, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
HpyF3I CTNAG 5 cut(s) 601, 819, 1043, 1094, 1293
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
HspAI GCGC 2 cut(s) 296, 347
KpnI GGTACC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 385, 1031, 1046, 1225
LmnI GCTCC 6 cut(s) 9, 394, 676, 994, 1151, 1270
Lsp1109I GCAGC 3 cut(s) 189, 229, 682
LweI GCATC 5 cut(s) 325, 334, 358, 911, 1129
MaeI CTAG 1 cut(s) 917
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 4 cut(s) 694, 912, 1173, 1247
MalI GATC 4 cut(s) 387, 1033, 1048, 1227
MboI GATC 4 cut(s) 385, 1031, 1046, 1225
MboII GAAGA 6 cut(s) 44, 148, 151, 568, 1041, 1144
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 4 cut(s) 385, 1031, 1046, 1225
MhlI GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 4 cut(s) 113, 191, 497, 602
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 6 cut(s) 106, 164, 385, 552, 761, 866
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 1 cut(s) 926
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 2 cut(s) 51, 423
MslI CAYNNNNRTG 1 cut(s) 1326
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 673, 735
MspI CCGG 1 cut(s) 792
MspR9I CCNGG 3 cut(s) 1070, 1115, 1171
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 3 cut(s) 1070, 1115, 1171
MvnI CGCG 3 cut(s) 296, 298, 539
MwoI GCNNNNNNNGC 6 cut(s) 177, 287, 361, 676, 930, 1151
NdeI CATATG 1 cut(s) 270
NdeII GATC 4 cut(s) 385, 1031, 1046, 1225
NlaIII CATG 7 cut(s) 43, 416, 683, 729, 805, 913, 1325
NlaIV GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
NmuCI GTSAC 3 cut(s) 694, 1173, 1247
NsbI TGCGCA 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 926
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 4 cut(s) 73, 823, 977, 1210
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 179, 244, 300, 672
PleI GAGTC 4 cut(s) 113, 191, 496, 601
PpsI GAGTC 4 cut(s) 113, 191, 496, 601
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 3 cut(s) 1068, 1113, 1169
PspEI GGTNACC 1 cut(s) 1173
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 3 cut(s) 1068, 1113, 1169
PspN4I GGNNCC 7 cut(s) 11, 89, 152, 731, 796, 1153, 1307
PspPI GGNCC 2 cut(s) 151, 259
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 4 cut(s) 385, 1031, 1046, 1225
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 2 cut(s) 89, 834
RsaNI GTAC 2 cut(s) 88, 833
RseI CAYNNNNRTG 1 cut(s) 1326
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 2 cut(s) 51, 423
SatI GCNGC 4 cut(s) 178, 243, 299, 671
Sau3AI GATC 4 cut(s) 385, 1031, 1046, 1225
Sau96I GGNCC 2 cut(s) 151, 259
SchI GAGTC 4 cut(s) 113, 191, 497, 602
ScrFI CCNGG 3 cut(s) 1070, 1115, 1171
SduI GDGCHC 5 cut(s) 552, 721, 909, 1258, 1275
SfaNI GCATC 5 cut(s) 325, 334, 358, 911, 1129
SfcI CTRYAG 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 1326
SmlI CTYRAG 2 cut(s) 389, 1085
SmoI CTYRAG 2 cut(s) 389, 1085
Sse9I AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 6 cut(s) 294, 298, 513, 539, 733, 982
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 1 cut(s) 909
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 1068, 1113, 1169
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 9 cut(s) 376, 460, 589, 700, 778, 849, 988, 1253, 1283
TaiI ACGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 63, 162, 616
TasI AATT 9 cut(s) 35, 471, 782, 900, 948, 1161, 1203, 1299, 1341
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 4 cut(s) 73, 823, 977, 1210
Tru1I TTAA 2 cut(s) 51, 423
Tru9I TTAA 2 cut(s) 51, 423
TscAI CASTG 6 cut(s) 119, 699, 865, 883, 991, 1282
TseFI GTSAC 3 cut(s) 694, 1173, 1247
TseI GCWGC 3 cut(s) 177, 242, 670
Tsp45I GTSAC 3 cut(s) 694, 1173, 1247
TspDTI ATGAA 5 cut(s) 15, 28, 56, 696, 1310
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 6 cut(s) 119, 699, 865, 883, 991, 1282
Van91I CCANNNNNTGG 1 cut(s) 1148
XapI RAATTY 3 cut(s) 35, 1203, 1299
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.