Rh6AG296500
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006216
Physical Location & Seq
Forward (+)
49438865 .. 49441969
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG296500.1

Sequence Viewer

Length: 1350 bp
ATGAGTTGGAGCCACCCAGATATTTCATTGGAAGAATTCATGAAACTGGTTAAAGGGTTCGTCGATATACTGATTCTGCTTTCTGGGTACCAATCCTCTGGTCGCCTTGCTCACTGGGACTCCCAGAACATCAAGAAGGCCTTCCAATGGGGCCTCTTCTTCGAAAATTTTCTGGAGAGCTTTAGCAGCTCTGATGATTATGTGGACTCTGTGATGGAACTTGATGGGGCTATTTCTGAAATGACATCTGCTGCTTCTTTCCCCAAGGGCCTTGCACATATGTCAACTGCTACTCTTGCTACCGCGCGCCGTTTTGTGTTAGAGCATCTCATCCATAGTTTACCTTTGAGAGATGCGCATCTGCGAGCTTTGCTGACGGCGACTGTGGAGATGGATCTTGAGGAGCTATCGGAAAGTGAGCATGATTTTCTTAATGTGTATCTCAACAAGTTGAAGCTGGAGAATACAGTCAATACACCAATTCGGCAAGGCATTGAGTCAGTTAGAAAGTTTGGAGATTGCGGTGGTAATGGTTTGACGAAATACGCGGTTCAAGGGCTCTTGAAGAGGTGGTCTGTGGTTTCTTTGATATCAACGGTTGAGTCAGGCTTAGACGTTCTTTCTCGAAGTGTCAGACGTAGCAGTTGGAGTGAGTTTGATGATAACTTATTGAAAGAGCAGCTGGAGCATGAAAATACTCCAGTGACTGTAGACTGGTTGGTTGGTTCTCTGACATGGAACCGCTGGAAATCAAATAGCCTCTCTTATTTTCTTGATAAGAGAACTGTTCAATTAGTCTCCGGTGCCAGCATGGTATTTTCTACCCCTAAGATTCAGTGGGTACAAACTTTTCAACGGTTGAACTTCAGTGATTTAGCAGGAGGCAGTGATAATGGTTTGTGCGAAACAATTGAGCTCATGTTACTAGGATGCATTGCAAGCAGATGGACTTCTGTAATTGAGCATTTGGTGTCAGTTTCTTATGATTCCCGCACTGTTTTGGAGCAATATCACGAAGTGTGCAACTTACTCCATGGAAGATCTAAACAGGAAGCAATCAGCCAGGCAACTGACATTCTTGAGTATCTGAGTGGAATGCTGGATGGCCAGGTGCATCTGTTATGGAAGATATGCCCAGCTCTTGGAGCCGTTGCAATTCCATCCTGGTCACCTTTGTTTAGACTTTATTTGAGTGAAATTCAGATTCAAGTCAGGGGAGATCTTTCAACAATGAGATGTTGTGACTGTGCTCATAATAGGACGGAGCACACTGACTGTGAACTTGCTCAGAGAATTTGGTGCCTTTATGTTTTTCATGTTTATGGCTCTCGTCCAATTGCCCATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

449

Amino Acids

50.75

Weight (kDa)

5.59

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 131 4.2e-09 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 3 cut(s) 87, 803, 1299
AccB7I CCANNNNNTGG 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 711
AccII CGCG 3 cut(s) 305, 307, 548
AciI CCGC 5 cut(s) 303, 522, 548, 742, 991
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 4 cut(s) 35, 166, 1197, 1293
AcuI CTGAAG 1 cut(s) 850
AdeI CACNNNGTG 1 cut(s) 1018
AfaI GTAC 2 cut(s) 89, 843
AfiI CCNNNNNNNGG 2 cut(s) 147, 1142
AgsI TTSAA 9 cut(s) 454, 554, 565, 673, 791, 854, 862, 1208, 1227
AjnI CCWGG 3 cut(s) 1062, 1107, 1163
AluBI AGCT 9 cut(s) 180, 189, 368, 406, 457, 682, 916, 1139, 1347
AluI AGCT 9 cut(s) 180, 189, 368, 406, 457, 682, 916, 1139, 1347
Alw21I GWGCWC 3 cut(s) 918, 1252, 1269
Alw26I GTCTC 1 cut(s) 802
AlwI GGATC 1 cut(s) 402
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 4 cut(s) 138, 151, 268, 1105
ApeKI GCWGC 3 cut(s) 186, 251, 679
ApoI RAATTY 4 cut(s) 35, 166, 1197, 1293
Asp700I GAANNNNTTC 2 cut(s) 140, 168
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 3 cut(s) 307, 309, 358
AspS9I GGNCC 2 cut(s) 151, 268
AsuHPI GGTGA 1 cut(s) 1161
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1107
BanI GGYRCC 3 cut(s) 87, 803, 1299
BanII GRGCYC 2 cut(s) 561, 918
Bbv12I GWGCWC 3 cut(s) 918, 1252, 1269
BbvI GCAGC 3 cut(s) 198, 238, 691
BccI CCATC 6 cut(s) 208, 218, 385, 939, 1097, 1168
BceAI ACGGC 3 cut(s) 294, 393, 1133
BciT130I CCWGG 3 cut(s) 1064, 1109, 1165
BcoDI GTCTC 1 cut(s) 802
BfaI CTAG 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 708
BglII AGATCT 2 cut(s) 1040, 1219
BisI GCNGC 3 cut(s) 187, 252, 680
BlsI GCNGC 3 cut(s) 188, 253, 681
Bme1390I CCNGG 3 cut(s) 1064, 1109, 1165
BmgT120I GGNCC 2 cut(s) 151, 268
BmiI GGNNCC 7 cut(s) 11, 89, 152, 740, 805, 1147, 1301
BmrFI CCNGG 3 cut(s) 1064, 1109, 1165
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 5 cut(s) 334, 343, 367, 920, 1123
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 4 cut(s) 194, 479, 684, 704
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 419, 1100
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 264, 1033
BsaWI WCCGGW 1 cut(s) 800
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1142
Bse1I ACTGG 4 cut(s) 51, 119, 701, 719
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 3 cut(s) 1064, 1109, 1165
BseDI CCNNGG 2 cut(s) 264, 1033
BseGI GGATG 4 cut(s) 330, 935, 1108, 1160
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 147, 1142
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 2 cut(s) 1079, 1301
BseNI ACTGG 4 cut(s) 51, 119, 701, 719
BsePI GCGCGC 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 198, 238, 691
BseYI CCCAGC 1 cut(s) 1135
Bsh1236I CGCG 3 cut(s) 305, 307, 548
BshFI GGCC 4 cut(s) 140, 153, 270, 1107
BshNI GGYRCC 3 cut(s) 87, 803, 1299
BsiHKAI GWGCWC 3 cut(s) 918, 1252, 1269
BsiSI CCGG 1 cut(s) 801
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 147, 1142
BsmAI GTCTC 1 cut(s) 802
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 4 cut(s) 140, 153, 270, 1107
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 4 cut(s) 561, 918, 1252, 1269
Bsp143I GATC 3 cut(s) 394, 1040, 1219
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 5 cut(s) 303, 522, 548, 742, 991
BspANI GGCC 4 cut(s) 140, 153, 270, 1107
BspCNI CTCAG 2 cut(s) 1080, 1300
BspFNI CGCG 3 cut(s) 305, 307, 548
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 7 cut(s) 11, 89, 152, 740, 805, 1147, 1301
BspPI GGATC 1 cut(s) 402
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 3 cut(s) 87, 803, 1299
BsrDI GCAATG 1 cut(s) 933
BsrI ACTGG 4 cut(s) 51, 119, 701, 719
BssECI CCNNGG 2 cut(s) 264, 1033
BssHII GCGCGC 1 cut(s) 305
BssMI GATC 3 cut(s) 394, 1040, 1219
BssT1I CCWWGG 2 cut(s) 264, 1033
Bst2UI CCWGG 3 cut(s) 1064, 1109, 1165
Bst4CI ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1247, 1277
Bst6I CTCTTC 2 cut(s) 161, 560
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 307, 366, 808, 940
BstDEI CTNAG 4 cut(s) 610, 828, 1088, 1287
BstDSI CCRYGG 1 cut(s) 1033
BstEII GGTNACC 1 cut(s) 1167
BstF5I GGATG 4 cut(s) 330, 935, 1108, 1160
BstFNI CGCG 3 cut(s) 305, 307, 548
BstHHI GCGC 3 cut(s) 307, 309, 358
BstKTI GATC 3 cut(s) 397, 1043, 1222
BstMAI GTCTC 1 cut(s) 802
BstMBI GATC 3 cut(s) 394, 1040, 1219
BstMWI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1145
BstNI CCWGG 3 cut(s) 1064, 1109, 1165
BstPI GGTNACC 1 cut(s) 1167
BstSCI CCNGG 3 cut(s) 1062, 1107, 1163
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 3 cut(s) 305, 307, 548
BstV1I GCAGC 3 cut(s) 198, 238, 691
BstX2I RGATCY 3 cut(s) 394, 1040, 1219
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 3 cut(s) 394, 1040, 1219
BsuRI GGCC 4 cut(s) 140, 153, 270, 1107
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 4 cut(s) 330, 935, 1108, 1160
BtsI GCAGTG 1 cut(s) 892
BtsIMutI CAGTG 7 cut(s) 112, 708, 842, 874, 892, 993, 1269
Cac8I GCNNGC 4 cut(s) 307, 366, 808, 940
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 39
CfoI GCGC 3 cut(s) 307, 309, 358
Cfr13I GGNCC 2 cut(s) 151, 268
Csp6I GTAC 2 cut(s) 88, 842
CviAII CATG 8 cut(s) 40, 422, 689, 735, 811, 919, 1034, 1316
CviQI GTAC 2 cut(s) 88, 842
DdeI CTNAG 4 cut(s) 610, 828, 1088, 1287
DpnI GATC 3 cut(s) 396, 1042, 1221
DpnII GATC 3 cut(s) 394, 1040, 1219
DraIII CACNNNGTG 1 cut(s) 1018
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 2 cut(s) 161, 560
EarI CTCTTC 2 cut(s) 161, 560
Ecl136II GAGCTC 1 cut(s) 916
Eco130I CCWWGG 2 cut(s) 264, 1033
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 561, 918
Eco32I GATATC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 850
Eco91I GGTNACC 1 cut(s) 1167
EcoICRI GAGCTC 1 cut(s) 916
EcoO109I RGGNCCY 2 cut(s) 151, 268
EcoO65I GGTNACC 1 cut(s) 1167
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 1062, 1107, 1163
EcoRV GATATC 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 264, 1033
EcoT22I ATGCAT 1 cut(s) 935
EcoT38I GRGCYC 2 cut(s) 561, 918
ErhI CCWWGG 2 cut(s) 264, 1033
FaeI CATG 8 cut(s) 43, 425, 692, 738, 814, 922, 1037, 1319
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 8 cut(s) 39, 421, 688, 734, 810, 918, 1033, 1315
FauI CCCGC 1 cut(s) 998
FauNDI CATATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 187, 252, 680
FokI GGATG 4 cut(s) 317, 942, 1115, 1147
FriOI GRGCYC 2 cut(s) 561, 918
Fsp4HI GCNGC 3 cut(s) 187, 252, 680
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 1 cut(s) 926
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 3 cut(s) 306, 308, 357
GluI GCNGC 3 cut(s) 187, 252, 680
GsaI CCCAGC 1 cut(s) 1139
GsuI CTGGAG 4 cut(s) 194, 479, 684, 704
HaeIII GGCC 4 cut(s) 140, 153, 270, 1107
HapII CCGG 1 cut(s) 801
HhaI GCGC 3 cut(s) 307, 309, 358
Hin1II CATG 8 cut(s) 43, 425, 692, 738, 814, 922, 1037, 1319
Hin6I GCGC 3 cut(s) 305, 307, 356
HinP1I GCGC 3 cut(s) 305, 307, 356
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 8 cut(s) 73, 119, 206, 497, 602, 832, 986, 1204
HpaII CCGG 1 cut(s) 801
HphI GGTGA 1 cut(s) 1161
Hpy166II GTNNAC 5 cut(s) 205, 285, 341, 712, 1280
Hpy188I TCNGA 8 cut(s) 193, 238, 412, 635, 732, 1089, 1203, 1290
Hpy188III TCNNGA 9 cut(s) 40, 133, 173, 398, 562, 624, 773, 1013, 1079
Hpy8I GTNNAC 5 cut(s) 205, 285, 341, 712, 1280
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 130, 151
HpyCH4III ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1247, 1277
HpyCH4IV ACGT 2 cut(s) 615, 637
HpyCH4V TGCA 6 cut(s) 275, 933, 938, 1023, 1114, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1145
HpyF3I CTNAG 4 cut(s) 610, 828, 1088, 1287
HpySE526I ACGT 2 cut(s) 615, 637
Hsp92II CATG 8 cut(s) 43, 425, 692, 738, 814, 922, 1037, 1319
HspAI GCGC 3 cut(s) 305, 307, 356
KpnI GGTACC 1 cut(s) 91
Kzo9I GATC 3 cut(s) 394, 1040, 1219
LmnI GCTCC 6 cut(s) 9, 403, 685, 1003, 1145, 1264
Lsp1109I GCAGC 3 cut(s) 198, 238, 691
LweI GCATC 5 cut(s) 334, 343, 367, 920, 1123
MaeI CTAG 1 cut(s) 926
MaeII ACGT 2 cut(s) 615, 637
MaeIII GTNAC 4 cut(s) 703, 921, 1167, 1241
MalI GATC 3 cut(s) 396, 1042, 1221
MboI GATC 3 cut(s) 394, 1040, 1219
MboII GAAGA 6 cut(s) 44, 148, 151, 577, 1050, 1138
MfeI CAATTG 2 cut(s) 909, 1335
MflI RGATCY 3 cut(s) 394, 1040, 1219
MhlI GDGCHC 4 cut(s) 561, 918, 1252, 1269
MlsI TGGCCA 1 cut(s) 1107
MluNI TGGCCA 1 cut(s) 1107
MlyI GAGTC 4 cut(s) 113, 200, 506, 611
MmeI TCCRAC 1 cut(s) 626
MnlI CCTC 6 cut(s) 106, 164, 394, 561, 770, 875
Mox20I TGGCCA 1 cut(s) 1107
Mph1103I ATGCAT 1 cut(s) 935
MroXI GAANNNNTTC 2 cut(s) 140, 168
MscI TGGCCA 1 cut(s) 1107
MseI TTAA 2 cut(s) 51, 432
MslI CAYNNNNRTG 1 cut(s) 1320
Msp20I TGGCCA 1 cut(s) 1107
MspA1I CMGCKG 2 cut(s) 682, 744
MspI CCGG 1 cut(s) 801
MspR9I CCNGG 3 cut(s) 1064, 1109, 1165
MunI CAATTG 2 cut(s) 909, 1335
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 3 cut(s) 1064, 1109, 1165
MvnI CGCG 3 cut(s) 305, 307, 548
MwoI GCNNNNNNNGC 6 cut(s) 186, 296, 370, 685, 939, 1145
NcoI CCATGG 1 cut(s) 1033
NdeI CATATG 1 cut(s) 279
NdeII GATC 3 cut(s) 394, 1040, 1219
NlaIII CATG 8 cut(s) 43, 425, 692, 738, 814, 922, 1037, 1319
NlaIV GGNNCC 7 cut(s) 11, 89, 152, 740, 805, 1147, 1301
NmuCI GTSAC 3 cut(s) 703, 1167, 1241
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 935
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PauI GCGCGC 1 cut(s) 305
PceI AGGCCT 1 cut(s) 140
PctI GAATGC 1 cut(s) 1101
PdmI GAANNNNTTC 2 cut(s) 140, 168
PfeI GAWTC 4 cut(s) 73, 832, 986, 1204
PflMI CCANNNNNTGG 1 cut(s) 1142
PkrI GCNGC 3 cut(s) 188, 253, 681
PleI GAGTC 4 cut(s) 113, 200, 505, 610
PpsI GAGTC 4 cut(s) 113, 200, 505, 610
Psp124BI GAGCTC 1 cut(s) 918
Psp6I CCWGG 3 cut(s) 1062, 1107, 1163
PspEI GGTNACC 1 cut(s) 1167
PspFI CCCAGC 1 cut(s) 1135
PspGI CCWGG 3 cut(s) 1062, 1107, 1163
PspN4I GGNNCC 7 cut(s) 11, 89, 152, 740, 805, 1147, 1301
PspPI GGNCC 2 cut(s) 151, 268
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 3 cut(s) 394, 1040, 1219
PteI GCGCGC 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 2 cut(s) 89, 843
RsaNI GTAC 2 cut(s) 88, 842
RseI CAYNNNNRTG 1 cut(s) 1320
SacI GAGCTC 1 cut(s) 918
SaqAI TTAA 2 cut(s) 51, 432
SatI GCNGC 3 cut(s) 187, 252, 680
Sau3AI GATC 3 cut(s) 394, 1040, 1219
Sau96I GGNCC 2 cut(s) 151, 268
SchI GAGTC 4 cut(s) 113, 200, 506, 611
ScrFI CCNGG 3 cut(s) 1064, 1109, 1165
SduI GDGCHC 4 cut(s) 561, 918, 1252, 1269
SfaNI GCATC 5 cut(s) 334, 343, 367, 920, 1123
SfcI CTRYAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 1320
SmlI CTYRAG 2 cut(s) 398, 1079
SmoI CTYRAG 2 cut(s) 398, 1079
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 5 cut(s) 303, 522, 548, 742, 991
SspMI CTAG 1 cut(s) 926
SstI GAGCTC 1 cut(s) 918
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 1062, 1107, 1163
StyI CCWWGG 2 cut(s) 264, 1033
TaaI ACNGT 9 cut(s) 385, 469, 598, 709, 787, 858, 997, 1247, 1277
TaiI ACGT 2 cut(s) 618, 640
TaqI TCGA 3 cut(s) 63, 162, 625
TfiI GAWTC 4 cut(s) 73, 832, 986, 1204
Tru1I TTAA 2 cut(s) 51, 432
Tru9I TTAA 2 cut(s) 51, 432
TscAI CASTG 7 cut(s) 119, 708, 842, 874, 892, 1000, 1276
TseFI GTSAC 3 cut(s) 703, 1167, 1241
TseI GCWGC 3 cut(s) 186, 251, 679
Tsp45I GTSAC 3 cut(s) 703, 1167, 1241
TspDTI ATGAA 5 cut(s) 15, 28, 56, 705, 1304
TspGWI ACGGA 1 cut(s) 1277
TspRI CASTG 7 cut(s) 119, 708, 842, 874, 892, 1000, 1276
Van91I CCANNNNNTGG 1 cut(s) 1142
XapI RAATTY 4 cut(s) 35, 166, 1197, 1293
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 140, 168
XspI CTAG 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.