AT5G44010
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006216
Physical Location & Seq
Reverse (-)
17706396 .. 17709326
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44010.2

Sequence Viewer

Length: 1074 bp
ATGGTTTGGAATTACCCAGAAATTTCCAAGGAAGATTTCATAAAGCTATTGAAAGGAAGCATAAATAGTTCAGATACGTTTGGGGAATCTATGAGAGAGCTTGACGAAGCTATATCAGAGATGAAATCTAACCCTTTGTTCCCAAAGGGTTTGGAGAATTTATCATCAGATAATCTTTCAAAGGGGAGAGAGTTTGTCTTAGAGCATTTGATGAATAACTCGACATTGAAGGATAAACAACTCCAAGCTATTCTAGTTGCTGCGGTGGAATCAGGTGACGGTATTAGAGAGATAATTGATGGGAAACTCTGTAAGAGGCAATCTGTTGTGTCCTGTGTATCAGCACTTGAAACTGGTTTGAAGATCCTTTCTAAGCACATAGAGCCTAAAGAGTCCCTACATAGAGAAGACAATGATGCAACTTTCTTGGGTTTGGGACAACAGCCTATTGAGCTTTTAAGATGGAATATCTGGCAGTCGAAAGCGATATCTTATTTTCTTAGTAAGAGAACGTTAAGATTAGTATCAGGAGCCAGCTTGATATTTTCTGCACCAAAAGCTCAGTGGGTAGAAATGTTGAGAAGGTTGCGTGTTTCAGATAAGAATGATGACGATATATTCATCGAAAAGATTGAGCTATTGTTACTAGGATGTGTAACAAGCAGATGGACCCATTTAATCGAAGGTATCATGTCAGTTTCCTACAAATCTGTCACTGTGTCAGAAGAATACGAGGAGTTATGCAAGCTTCTTCTTCAAAGATCTAAATGCTTAAAACAGAACGAGATTGCTTTGAATTCTAAGGTTGAAGAGATTCTAGAGTATCTAACAGAAATACTTGAGAGTCGTTTTCATCAGCTCTGGAAATTGCCTTCTGCCCTTACCGCAGCTGCAATTCCATCATGGTCACCGCTGTTTGGTCTGTATTTTGGCGGAATAGAGAAACAGTTGAAACTAGACCACTCAACAACAAGATTTTGCAGCTGCGATAAAGATCTAAACGAGCACAATGACTGTGAGCTCGCGGAAAGAGTTTGGTGCTTGTACGTATTCCATATCTGCATATGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

357

Amino Acids

40.79

Weight (kDa)

5.7

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 155 5.1e-12 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1025
AciI CCGC 5 cut(s) 263, 885, 911, 933, 1025
AclI AACGTT 1 cut(s) 512
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 3 cut(s) 21, 157, 796
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 1 cut(s) 917
AgsI TTSAA 9 cut(s) 52, 180, 229, 350, 361, 758, 796, 809, 952
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
Alw21I GWGCWC 2 cut(s) 1008, 1023
AlwI GGATC 1 cut(s) 358
ApeKI GCWGC 5 cut(s) 260, 887, 890, 981, 984
ApoI RAATTY 3 cut(s) 21, 157, 796
Asp700I GAANNNNTTC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 669
AsuHPI GGTGA 2 cut(s) 287, 900
AvaII GGWCC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 1008, 1023
BbvI GCAGC 5 cut(s) 247, 877, 899, 971, 993
BccI CCATC 4 cut(s) 293, 456, 660, 907
BfaI CTAG 5 cut(s) 254, 647, 818, 956, 1072
BglII AGATCT 2 cut(s) 761, 994
BisI GCNGC 5 cut(s) 261, 888, 891, 982, 985
BlsI GCNGC 5 cut(s) 262, 889, 892, 983, 986
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 1 cut(s) 669
BmiI GGNNCC 2 cut(s) 532, 671
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 860
BsaAI YACGTR 1 cut(s) 1048
BsaBI GATNNNNATC 2 cut(s) 523, 993
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse1I ACTGG 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 523, 993
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 656
BseJI GATNNNNATC 2 cut(s) 523, 993
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 5 cut(s) 247, 877, 899, 971, 993
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 1025
BsiHKAI GWGCWC 2 cut(s) 1008, 1023
BslFI GGGAC 2 cut(s) 379, 450
BslI CCNNNNNNNGG 1 cut(s) 917
BsmFI GGGAC 2 cut(s) 379, 450
Bsp1286I GDGCHC 2 cut(s) 1008, 1023
Bsp143I GATC 3 cut(s) 363, 761, 994
BspACI CCGC 5 cut(s) 263, 885, 911, 933, 1025
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 1 cut(s) 1025
BspLI GGNNCC 2 cut(s) 532, 671
BspPI GGATC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 363, 761, 994
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 4 cut(s) 281, 718, 948, 1016
Bst6I CTCTTC 1 cut(s) 804
BstBAI YACGTR 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 535, 746, 1023
BstDEI CTNAG 5 cut(s) 199, 372, 500, 561, 801
BstEII GGTNACC 1 cut(s) 906
BstF5I GGATG 1 cut(s) 656
BstFNI CGCG 1 cut(s) 1025
BstKTI GATC 3 cut(s) 366, 764, 997
BstMBI GATC 3 cut(s) 363, 761, 994
BstMWI GCNNNNNNNGC 4 cut(s) 382, 451, 557, 884
BstPI GGTNACC 1 cut(s) 906
BstSNI TACGTA 1 cut(s) 1048
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 5 cut(s) 247, 877, 899, 971, 993
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 3 cut(s) 363, 761, 994
BstYI RGATCY 3 cut(s) 363, 761, 994
BtsCI GGATG 1 cut(s) 656
BtsIMutI CAGTG 2 cut(s) 569, 714
Cac8I GCNNGC 3 cut(s) 535, 746, 1023
Cfr13I GGNCC 1 cut(s) 669
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 2 cut(s) 691, 903
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 5 cut(s) 199, 372, 500, 561, 801
DpnI GATC 3 cut(s) 365, 763, 996
DpnII GATC 3 cut(s) 363, 761, 994
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 1 cut(s) 948
Ecl136II GAGCTC 1 cut(s) 1021
Eco105I TACGTA 1 cut(s) 1048
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 1023
Eco32I GATATC 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 1021
Eco91I GGTNACC 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 1021
EcoO65I GGTNACC 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 796
EcoRV GATATC 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 694, 906
FaqI GGGAC 2 cut(s) 379, 450
FatI CATG 2 cut(s) 690, 902
FauNDI CATATG 1 cut(s) 1064
Fnu4HI GCNGC 5 cut(s) 261, 888, 891, 982, 985
FokI GGATG 1 cut(s) 663
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 5 cut(s) 261, 888, 891, 982, 985
FspBI CTAG 5 cut(s) 254, 647, 818, 956, 1072
GluI GCNGC 5 cut(s) 261, 888, 891, 982, 985
Hin1II CATG 2 cut(s) 694, 906
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 86, 269, 392, 814, 844
HphI GGTGA 2 cut(s) 287, 900
Hpy188I TCNGA 5 cut(s) 73, 118, 169, 598, 724
Hpy188III TCNNGA 3 cut(s) 528, 818, 862
HpyAV CCTTC 4 cut(s) 223, 576, 677, 882
HpyCH4III ACNGT 4 cut(s) 281, 718, 948, 1016
HpyCH4IV ACGT 3 cut(s) 77, 512, 1047
HpyCH4V TGCA 6 cut(s) 419, 551, 744, 893, 981, 1062
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 451, 557, 884
HpyF3I CTNAG 5 cut(s) 199, 372, 500, 561, 801
HpySE526I ACGT 3 cut(s) 77, 512, 1047
Hsp92II CATG 2 cut(s) 694, 906
Kzo9I GATC 3 cut(s) 363, 761, 994
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 8 cut(s) 30, 258, 339, 346, 457, 513, 547, 847
Lsp1109I GCAGC 5 cut(s) 247, 877, 899, 971, 993
LweI GCATC 1 cut(s) 406
MaeI CTAG 5 cut(s) 254, 647, 818, 956, 1072
MaeII ACGT 3 cut(s) 77, 512, 1047
MaeIII GTNAC 5 cut(s) 275, 642, 655, 712, 906
MalI GATC 3 cut(s) 365, 763, 996
MboI GATC 3 cut(s) 363, 761, 994
MboII GAAGA 7 cut(s) 44, 373, 419, 737, 743, 746, 821
MflI RGATCY 3 cut(s) 363, 761, 994
MhlI GDGCHC 2 cut(s) 1008, 1023
MluCI AATT 7 cut(s) 10, 21, 157, 294, 796, 866, 894
MlyI GAGTC 2 cut(s) 401, 853
MnlI CCTC 2 cut(s) 309, 727
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 4 cut(s) 458, 515, 677, 773
MspA1I CMGCKG 3 cut(s) 890, 913, 984
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 4 cut(s) 382, 451, 557, 884
NdeI CATATG 1 cut(s) 1064
NdeII GATC 3 cut(s) 363, 761, 994
NlaIII CATG 2 cut(s) 694, 906
NlaIV GGNNCC 2 cut(s) 532, 671
NmuCI GTSAC 3 cut(s) 275, 712, 906
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 3 cut(s) 86, 269, 814
PkrI GCNGC 5 cut(s) 262, 889, 892, 983, 986
PleI GAGTC 2 cut(s) 400, 852
PpsI GAGTC 2 cut(s) 400, 852
Ppu21I YACGTR 1 cut(s) 1048
Psp124BI GAGCTC 1 cut(s) 1023
Psp1406I AACGTT 1 cut(s) 512
PspEI GGTNACC 1 cut(s) 906
PspN4I GGNNCC 2 cut(s) 532, 671
PspPI GGNCC 1 cut(s) 669
PsuI RGATCY 3 cut(s) 363, 761, 994
PvuII CAGCTG 2 cut(s) 890, 984
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 4 cut(s) 458, 515, 677, 773
SatI GCNGC 5 cut(s) 261, 888, 891, 982, 985
Sau3AI GATC 3 cut(s) 363, 761, 994
Sau96I GGNCC 1 cut(s) 669
SchI GAGTC 2 cut(s) 401, 853
SduI GDGCHC 2 cut(s) 1008, 1023
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
SnaBI TACGTA 1 cut(s) 1048
Sse9I AATT 7 cut(s) 10, 21, 157, 294, 796, 866, 894
SsiI CCGC 5 cut(s) 263, 885, 911, 933, 1025
SspMI CTAG 5 cut(s) 254, 647, 818, 956, 1072
SstI GAGCTC 1 cut(s) 1023
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 4 cut(s) 281, 718, 948, 1016
TaiI ACGT 3 cut(s) 80, 515, 1050
TaqI TCGA 4 cut(s) 221, 479, 624, 681
TasI AATT 7 cut(s) 10, 21, 157, 294, 796, 866, 894
TfiI GAWTC 3 cut(s) 86, 269, 814
Tru1I TTAA 4 cut(s) 458, 515, 677, 773
Tru9I TTAA 4 cut(s) 458, 515, 677, 773
TscAI CASTG 2 cut(s) 569, 721
TseFI GTSAC 3 cut(s) 275, 712, 906
TseI GCWGC 5 cut(s) 260, 887, 890, 981, 984
Tsp45I GTSAC 3 cut(s) 275, 712, 906
TspDTI ATGAA 5 cut(s) 28, 137, 227, 610, 842
TspRI CASTG 2 cut(s) 569, 721
VpaK11BI GGWCC 1 cut(s) 669
XapI RAATTY 3 cut(s) 21, 157, 796
XbaI TCTAGA 1 cut(s) 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 5 cut(s) 254, 647, 818, 956, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.