Prupe.8G216500_v2.0.a1
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006216
Physical Location & Seq
Forward (+)
19828536 .. 19831391
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G216500.1

Sequence Viewer

Length: 1341 bp
ATGGGCTGGAACCACCCACACATCTCCTTGGAGCAACTCTTAAATCTGATCAAAGGGTTTGTAGATATACTGCTTCTGCTTTCTGGGTATCAATCTTCTGGTCGACTTGCCCAATGGGACTCCAACAACATCAAAAAAGCCTTCCAATGGGGCCTCTTCTTTGAGAAGGTCCTTGGAAGTTTTGGCTGCTCAGATGATTATGGGGGATCTATGGAGGAGCTTGATGCAGCTCTATCTGAAATGACATCTGCTGCTTCTCTTCCTAAGGGGCTTGCACTTCTTTCATCTGCTAATCTTACTACTGCACGGCACTTTGTATTAGACCATCTCATTCATACCTTACCGTTGAGGGATGCACATCTCAGAGCTTTGCTGATGGCAACTGTAGAGATGGATCTTGAAGAGCTATCAGAAACTGAGCATGATTTTCTGAATGCATACTTCAACAAGTTGAAGTTGCAGAATACATCGCTTCACCGAAGCATTGCATCAGCTACAAAGATTGAAAATTGCGCTGGTGATGGTTTCACCAAGTATGTGGTGCAAGAGCTCTTGAAGCGGTGGTCTAAAATTTCTTTAATGTCAGCGGTTGAGGCAGGCTTAGATGTTCTTTCTCATAGTATCAGACATAGCAGTTGGAGCGAGTTTGATGATAATTTGTTAAAAGAACAACTAAAGCGTGAAAATGCTCCAGACATTGTAGAGTGGTTGGTTGGTTCTCTGACATGGAATCACTGGAAATCAAAGAATATCTCCTATTTTCTTGATAAGAGAACTATTCAATTGGTCTCCGGTGCCAGCATGATATTTTCTGCCCCTAAGATTCAGTGGGTACAAATATTTGGACGGCTGAATTTGAATGTTTCAGCAGGAAGCAGTGATGATGGTCTGCGCGAAACAATTGAGCTCTTATTAGTAGGGTGCATTACAAGCAGATGGACTTCTCTAATCGAATATATGGTGTCAGTTTGTTATGATTGCAAAAATATTTCGGAGCAATATCATGAAGTGTGCAACTTACTTTATGGAAGATCTACAGCTCCTATATCTAAACAGGAAGCAGAAAGTAACATTCTTGAATATTTGAGTGGACTTCTGGGAAGTCAGCTGCATCAGTTGTGGAAAATGTCCCCATCCCTTGTGGCCGTTGCAATTCCATCCCGGTCACCCTTGTTTAGACTTTATTTGAGCGAAATTCAGATTCAGTTTAGAGGAGAGTTTTCAACTATGAGATGCTGTGGCTGTGCTCATGATATGAAGGAGCATAATGACTGTGAGCTTGCTGAGAGAATTTGGTGCCTTTACATTTTTCATGTTTGTGGCTCCCACCTGTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

447

Amino Acids

50.41

Weight (kDa)

5.86

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 794, 1296
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 894
AciI CCGC 2 cut(s) 559, 587
AclWI GGATC 2 cut(s) 214, 402
AcoI YGGCCR 1 cut(s) 1143
AcsI RAATTY 4 cut(s) 570, 853, 1194, 1290
AfaI GTAC 1 cut(s) 834
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 9 cut(s) 401, 445, 454, 506, 556, 782, 859, 1079, 1224
Alw21I GWGCWC 3 cut(s) 552, 909, 1249
Alw26I GTCTC 1 cut(s) 793
AlwI GGATC 2 cut(s) 214, 402
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 2 cut(s) 151, 1143
ApeKI GCWGC 4 cut(s) 186, 227, 251, 1108
ApoI RAATTY 4 cut(s) 570, 853, 1194, 1290
AspLEI GCGC 2 cut(s) 515, 894
AspS9I GGNCC 2 cut(s) 151, 169
AsuC2I CCSGG 1 cut(s) 1162
AsuHPI GGTGA 4 cut(s) 467, 520, 530, 1158
AvaII GGWCC 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 264
BanI GGYRCC 2 cut(s) 794, 1296
BanII GRGCYC 2 cut(s) 552, 909
Bbv12I GWGCWC 3 cut(s) 552, 909, 1249
BbvI GCAGC 4 cut(s) 173, 238, 239, 1095
BccI CCATC 8 cut(s) 333, 370, 385, 515, 878, 930, 1141, 1165
BceAI ACGGC 3 cut(s) 323, 863, 1130
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 1162
BcoDI GTCTC 1 cut(s) 793
BfmI CTRYAG 2 cut(s) 384, 1035
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 4 cut(s) 187, 228, 252, 1109
BlsI GCNGC 4 cut(s) 188, 229, 253, 1110
Bme1390I CCNGG 1 cut(s) 1162
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 151, 169
BmiI GGNNCC 5 cut(s) 11, 152, 796, 1298, 1324
BmrFI CCNGG 1 cut(s) 1162
BmsI GCATC 5 cut(s) 214, 343, 497, 1120, 1223
BpmI CTGGAG 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 1162
BsaBI GATNNNNATC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 793
BsaJI CCNNGG 2 cut(s) 27, 172
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 740
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 27, 172
BseGI GGATG 3 cut(s) 358, 1133, 1157
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 4 cut(s) 204, 376, 408, 1275
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 230, 1227
BseXI GCAGC 4 cut(s) 173, 238, 239, 1095
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 894
BshFI GGCC 2 cut(s) 153, 1145
BshNI GGYRCC 2 cut(s) 794, 1296
BsiHKAI GWGCWC 3 cut(s) 552, 909, 1249
BsiSI CCGG 2 cut(s) 792, 1162
BslFI GGGAC 2 cut(s) 131, 1114
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 793
BsmFI GGGAC 2 cut(s) 131, 1114
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 153, 1145
Bso31I GGTCTC 1 cut(s) 793
Bsp1286I GDGCHC 3 cut(s) 552, 909, 1249
Bsp143I GATC 4 cut(s) 48, 206, 394, 1031
BspACI CCGC 2 cut(s) 559, 587
BspANI GGCC 2 cut(s) 153, 1145
BspCNI CTCAG 4 cut(s) 203, 375, 409, 1276
BspFNI CGCG 1 cut(s) 894
BspHI TCATGA 2 cut(s) 1003, 1249
BspLI GGNNCC 5 cut(s) 11, 152, 796, 1298, 1324
BspPI GGATC 2 cut(s) 214, 402
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 794, 1296
BspTNI GGTCTC 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 2 cut(s) 27, 172
BssMI GATC 4 cut(s) 48, 206, 394, 1031
BssT1I CCWWGG 2 cut(s) 27, 172
Bst4CI ACNGT 3 cut(s) 345, 385, 1274
Bst6I CTCTTC 3 cut(s) 161, 264, 396
BstC8I GCNNGC 4 cut(s) 273, 598, 799, 1281
BstDEI CTNAG 7 cut(s) 190, 264, 362, 417, 601, 819, 1284
BstEII GGTNACC 1 cut(s) 1164
BstF5I GGATG 3 cut(s) 358, 1133, 1157
BstFNI CGCG 1 cut(s) 894
BstHHI GCGC 2 cut(s) 515, 894
BstKTI GATC 4 cut(s) 51, 209, 397, 1034
BstMAI GTCTC 1 cut(s) 793
BstMBI GATC 4 cut(s) 48, 206, 394, 1031
BstMWI GCNNNNNNNGC 4 cut(s) 556, 593, 639, 930
BstPI GGTNACC 1 cut(s) 1164
BstSCI CCNGG 1 cut(s) 1160
BstSFI CTRYAG 2 cut(s) 384, 1035
BstUI CGCG 1 cut(s) 894
BstV1I GCAGC 4 cut(s) 173, 238, 239, 1095
BstX2I RGATCY 3 cut(s) 206, 394, 1031
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 3 cut(s) 206, 394, 1031
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 153, 1145
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 358, 1133, 1157
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 3 cut(s) 733, 833, 883
Cac8I GCNNGC 4 cut(s) 273, 598, 799, 1281
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 2 cut(s) 1003, 1249
CfoI GCGC 2 cut(s) 515, 894
Cfr13I GGNCC 2 cut(s) 151, 169
Csp6I GTAC 1 cut(s) 833
CviAII CATG 6 cut(s) 422, 726, 802, 1004, 1250, 1313
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 7 cut(s) 190, 264, 362, 417, 601, 819, 1284
DpnI GATC 4 cut(s) 50, 208, 396, 1033
DpnII GATC 4 cut(s) 48, 206, 394, 1031
EaeI YGGCCR 1 cut(s) 1143
Eam1104I CTCTTC 3 cut(s) 161, 264, 396
EarI CTCTTC 3 cut(s) 161, 264, 396
Ecl136II GAGCTC 2 cut(s) 550, 907
Eco130I CCWWGG 2 cut(s) 27, 172
Eco24I GRGCYC 2 cut(s) 552, 909
Eco31I GGTCTC 1 cut(s) 793
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 2 cut(s) 550, 907
Eco81I CCTNAGG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 1164
EcoICRI GAGCTC 2 cut(s) 550, 907
EcoO109I RGGNCCY 2 cut(s) 151, 169
EcoO65I GGTNACC 1 cut(s) 1164
EcoT14I CCWWGG 2 cut(s) 27, 172
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 552, 909
ErhI CCWWGG 2 cut(s) 27, 172
FaeI CATG 6 cut(s) 425, 729, 805, 1007, 1253, 1316
FaqI GGGAC 2 cut(s) 131, 1114
FatI CATG 6 cut(s) 421, 725, 801, 1003, 1249, 1312
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 187, 228, 252, 1109
FokI GGATG 3 cut(s) 365, 1120, 1144
FriOI GRGCYC 2 cut(s) 552, 909
Fsp4HI GCNGC 4 cut(s) 187, 228, 252, 1109
GlaI GCGC 2 cut(s) 514, 893
GluI GCNGC 4 cut(s) 187, 228, 252, 1109
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 2 cut(s) 153, 1145
HapII CCGG 2 cut(s) 792, 1162
HhaI GCGC 2 cut(s) 515, 894
Hin1II CATG 6 cut(s) 425, 729, 805, 1007, 1253, 1316
Hin6I GCGC 2 cut(s) 513, 892
HinP1I GCGC 2 cut(s) 513, 892
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 4 cut(s) 119, 730, 823, 1201
HpaII CCGG 2 cut(s) 792, 1162
HphI GGTGA 4 cut(s) 467, 520, 530, 1158
Hpy166II GTNNAC 2 cut(s) 104, 1091
Hpy188III TCNNGA 7 cut(s) 398, 553, 692, 764, 1004, 1076, 1250
Hpy8I GTNNAC 2 cut(s) 104, 1091
HpyAV CCTTC 3 cut(s) 151, 160, 1252
HpyCH4III ACNGT 3 cut(s) 345, 385, 1274
HpyF10VI GCNNNNNNNGC 4 cut(s) 556, 593, 639, 930
HpyF3I CTNAG 7 cut(s) 190, 264, 362, 417, 601, 819, 1284
Hsp92II CATG 6 cut(s) 425, 729, 805, 1007, 1253, 1316
HspAI GCGC 2 cut(s) 513, 892
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 206, 394, 1031
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 8 cut(s) 31, 217, 639, 694, 994, 1045, 1261, 1328
Lsp1109I GCAGC 4 cut(s) 173, 238, 239, 1095
LweI GCATC 5 cut(s) 214, 343, 497, 1120, 1223
MaeIII GTNAC 2 cut(s) 1067, 1164
MalI GATC 4 cut(s) 50, 208, 396, 1033
MboI GATC 4 cut(s) 48, 206, 394, 1031
MboII GAAGA 5 cut(s) 87, 148, 251, 413, 1041
MfeI CAATTG 2 cut(s) 782, 900
MflI RGATCY 3 cut(s) 206, 394, 1031
MhlI GDGCHC 3 cut(s) 552, 909, 1249
MluCI AATT 9 cut(s) 508, 570, 655, 782, 853, 900, 1152, 1194, 1290
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 147, 617
MnlI CCTC 5 cut(s) 164, 208, 342, 586, 1205
Mph1103I ATGCAT 1 cut(s) 439
MseI TTAA 3 cut(s) 41, 578, 662
MslI CAYNNNNRTG 1 cut(s) 1317
MspA1I CMGCKG 2 cut(s) 587, 1108
MspI CCGG 2 cut(s) 792, 1162
MspR9I CCNGG 1 cut(s) 1162
MunI CAATTG 2 cut(s) 782, 900
Mva1269I GAATGC 1 cut(s) 439
MvnI CGCG 1 cut(s) 894
MwoI GCNNNNNNNGC 4 cut(s) 556, 593, 639, 930
NciI CCSGG 1 cut(s) 1162
NdeII GATC 4 cut(s) 48, 206, 394, 1031
NlaIII CATG 6 cut(s) 425, 729, 805, 1007, 1253, 1316
NlaIV GGNNCC 5 cut(s) 11, 152, 796, 1298, 1324
NmuCI GTSAC 1 cut(s) 1164
NsiI ATGCAT 1 cut(s) 439
PagI TCATGA 2 cut(s) 1003, 1249
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 730, 823, 1201
PkrI GCNGC 4 cut(s) 188, 229, 253, 1110
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 169
Psp124BI GAGCTC 2 cut(s) 552, 909
Psp5II RGGWCCY 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 1164
PspN4I GGNNCC 5 cut(s) 11, 152, 796, 1298, 1324
PspPI GGNCC 2 cut(s) 151, 169
PspPPI RGGWCCY 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 3 cut(s) 206, 394, 1031
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 1 cut(s) 1317
SacI GAGCTC 2 cut(s) 552, 909
SalI GTCGAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 3 cut(s) 41, 578, 662
SatI GCNGC 4 cut(s) 187, 228, 252, 1109
Sau3AI GATC 4 cut(s) 48, 206, 394, 1031
Sau96I GGNCC 2 cut(s) 151, 169
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 1162
SduI GDGCHC 3 cut(s) 552, 909, 1249
SfaNI GCATC 5 cut(s) 214, 343, 497, 1120, 1223
SfcI CTRYAG 2 cut(s) 384, 1035
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 1317
Sse9I AATT 9 cut(s) 508, 570, 655, 782, 853, 900, 1152, 1194, 1290
SsiI CCGC 2 cut(s) 559, 587
SspI AATATT 3 cut(s) 840, 988, 1082
SstI GAGCTC 2 cut(s) 552, 909
StyD4I CCNGG 1 cut(s) 1160
StyI CCWWGG 2 cut(s) 27, 172
TaaI ACNGT 3 cut(s) 345, 385, 1274
TaqI TCGA 2 cut(s) 103, 951
TasI AATT 9 cut(s) 508, 570, 655, 782, 853, 900, 1152, 1194, 1290
TfiI GAWTC 3 cut(s) 730, 823, 1201
Tru1I TTAA 3 cut(s) 41, 578, 662
Tru9I TTAA 3 cut(s) 41, 578, 662
TscAI CASTG 3 cut(s) 740, 833, 883
TseFI GTSAC 1 cut(s) 1164
TseI GCWGC 4 cut(s) 186, 227, 251, 1108
Tsp45I GTSAC 1 cut(s) 1164
TspDTI ATGAA 5 cut(s) 273, 323, 1020, 1271, 1301
TspRI CASTG 3 cut(s) 740, 833, 883
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 4 cut(s) 570, 853, 1194, 1290
XmiI GTMKAC 1 cut(s) 103
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.