RLG00000012529
MYB Family

Fanconi anemia group F protein (FANCF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006216
Physical Location & Seq
Reverse (-)
19588520 .. 19591697
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012529

Sequence Viewer

Length: 1317 bp
ATGAGTTGGAGCCACCCAGATATTTCATTGGAAGAATTCATGAAACTGGTAAAAGGGTTCGTCGATATACTGATTCTGCTTTCTGGGTACCAATCCTCTGGTCGTCTTGCTCACTGGGACTCCCAGAACATCAAGAAGGCCTTCCAATGGGGCCTCTTCTTCGAAAATTTTCTGGGGAGCTTTAGCAGCTCTGATGATTATGTGGACTCTGTGATGGAACTTGATGGGGCTATTTCTGAAATGACATCTGCTGCTTCTTTCCCCAAGGGCCTTGCACATATGTCAACTGCTACTCTTGCTACGGCGCAGCGTTTTGTGTTAGAGCATCTCATCCATTGTTTACCTTTGAGAGATGCACATCTGAGAGCTTTGCTGACGGTGACTGTGGAGATGGATCTTGAGGAGCTATCGGAAATTGAGCATGATTTTCTGAATCTATACCTCAACAAGTTGAAGCTGGAGAATACACCAATTCAGCAAGGCATTGAGCCGGCTAGAAAATTTGGAGATTGCGGTGGTAATGGTTTGACGAAATACGCAGTTCAAGGGCTCTTGAAGAGGTGGTCTGTGGTTTCTTTGATATCAACGGTTGAGTCAGGCTTAGATGTTCTTTCTCAAAGTGTCAGACATAGCAGTTGGAGTGAGTTTGATGATAACTTATTGAAAGAGCAGCTGAAGCATGAAAATACTCCGGTGACTGTAGACTGGTTGGTTGGTTCTCTGACATGGAACCGCTGGAAATCAAATAGCCTCTCTTATTTTCTTGATAAGAGAACTATTCATTTAGTCTCCGGTGCCAGCATGGTATTTTCTACCCCTAAGATTCAGTGGGTACAAACTTTTCAACGGTTGAACTTCAGTGATTTAGCAGGAGGCAGTGATAACGGTCTGTGCGAAACAATTGAGCTCATGTTACTAGGATGCATTGCAAGCAGATGGACTTCTGTAATTGAGCATTTGGTGTCAGTTTCTTATGATTCCCGCACTGTTTTGGAGCAATATCACGAAGTGTGCAACTTACTCCATGGAAGATCTACTACTCTTAGATCTAAACAGGAAGCAATCGGCCAGGCAACTGACATTCTTGAGTATCTGAGTGGAATGCTGGATGGCCAGGTGCATCTGTTATGGAAGATATGCCCAGCTCTTGGAGCTGTTGCAATTCCATCCTGGTCAACTTTGTTTAGACTTTATTTGAGTGAAATTCAGATTCAAGTCAGGGGAGACCTTTCAACAATGAGATGTTGTGATTGTGCTCATAATAGGAAGGAGCACACTGACTGTCAGTCTTCTGATAAGAATCTTGATCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FANCF Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

439

Amino Acids

49.27

Weight (kDa)

5.5

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCF PF11107 11 - 129 2.4e-08 Fanconi anemia group F protein (FANCF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 2 cut(s) 87, 794
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 702
AciI CCGC 3 cut(s) 513, 733, 982
AclWI GGATC 2 cut(s) 402, 1301
AcoI YGGCCR 2 cut(s) 1066, 1111
AcsI RAATTY 4 cut(s) 35, 166, 500, 1203
AcuI CTGAAG 2 cut(s) 695, 841
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 2 cut(s) 89, 834
AfiI CCNNNNNNNGG 2 cut(s) 147, 1148
AgsI TTSAA 8 cut(s) 454, 545, 556, 664, 845, 853, 1214, 1233
AhdI GACNNNNNGTC 1 cut(s) 1285
AjnI CCWGG 3 cut(s) 1068, 1113, 1169
AluBI AGCT 9 cut(s) 180, 189, 368, 406, 457, 673, 907, 1145, 1154
AluI AGCT 9 cut(s) 180, 189, 368, 406, 457, 673, 907, 1145, 1154
Alw21I GWGCWC 3 cut(s) 909, 1258, 1275
Alw26I GTCTC 2 cut(s) 793, 1218
AlwI GGATC 2 cut(s) 402, 1301
AoxI GGCC 5 cut(s) 138, 151, 268, 1066, 1111
ApeKI GCWGC 4 cut(s) 186, 251, 307, 670
ApoI RAATTY 4 cut(s) 35, 166, 500, 1203
Asp700I GAANNNNTTC 2 cut(s) 140, 168
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 151, 268
AsuHPI GGTGA 2 cut(s) 391, 706
AsuII TTCGAA 1 cut(s) 162
BalI TGGCCA 1 cut(s) 1113
BanI GGYRCC 2 cut(s) 87, 794
BanII GRGCYC 2 cut(s) 552, 909
BarI GAAGNNNNNNTAC 2 cut(s) 1021, 1053
BbsI GAAGAC 1 cut(s) 1281
Bbv12I GWGCWC 3 cut(s) 909, 1258, 1275
BbvI GCAGC 4 cut(s) 198, 238, 319, 682
BccI CCATC 6 cut(s) 208, 218, 385, 930, 1103, 1174
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 3 cut(s) 1070, 1115, 1171
BcoDI GTCTC 2 cut(s) 793, 1218
BfaI CTAG 2 cut(s) 495, 917
BfmI CTRYAG 1 cut(s) 699
BglII AGATCT 2 cut(s) 1031, 1046
BisI GCNGC 4 cut(s) 187, 252, 308, 671
BlsI GCNGC 4 cut(s) 188, 253, 309, 672
Bme1390I CCNGG 3 cut(s) 1070, 1115, 1171
BmeRI GACNNNNNGTC 1 cut(s) 1285
BmgT120I GGNCC 2 cut(s) 151, 268
BmiI GGNNCC 5 cut(s) 11, 89, 152, 731, 796
BmrFI CCNGG 3 cut(s) 1070, 1115, 1171
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 4 cut(s) 334, 343, 911, 1129
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 1281
BpmI CTGGAG 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 419, 1106
BsaBI GATNNNNATC 2 cut(s) 357, 1299
BsaI GGTCTC 1 cut(s) 1218
BsaJI CCNNGG 2 cut(s) 264, 1024
BsaWI WCCGGW 2 cut(s) 691, 791
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 1148
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 3 cut(s) 51, 119, 710
Bse3DI GCAATG 1 cut(s) 924
Bse8I GATNNNNATC 2 cut(s) 357, 1299
BseBI CCWGG 3 cut(s) 1070, 1115, 1171
BseDI CCNNGG 2 cut(s) 264, 1024
BseGI GGATG 4 cut(s) 330, 926, 1114, 1166
BseJI GATNNNNATC 2 cut(s) 357, 1299
BseLI CCNNNNNNNGG 2 cut(s) 147, 1148
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 353, 1085
BseNI ACTGG 3 cut(s) 51, 119, 710
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 4 cut(s) 198, 238, 319, 682
BseYI CCCAGC 1 cut(s) 1141
BshFI GGCC 5 cut(s) 140, 153, 270, 1068, 1113
BshNI GGYRCC 2 cut(s) 87, 794
BsiHKAI GWGCWC 3 cut(s) 909, 1258, 1275
BsiSI CCGG 3 cut(s) 491, 692, 792
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 147, 1148
BsmAI GTCTC 2 cut(s) 793, 1218
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 5 cut(s) 140, 153, 270, 1068, 1113
Bso31I GGTCTC 1 cut(s) 1218
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 4 cut(s) 552, 909, 1258, 1275
Bsp143I GATC 4 cut(s) 394, 1031, 1046, 1306
Bsp19I CCATGG 1 cut(s) 1024
BspACI CCGC 3 cut(s) 513, 733, 982
BspANI GGCC 5 cut(s) 140, 153, 270, 1068, 1113
BspCNI CTCAG 2 cut(s) 354, 1086
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 5 cut(s) 11, 89, 152, 731, 796
BspPI GGATC 2 cut(s) 402, 1301
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 2 cut(s) 87, 794
BspTNI GGTCTC 1 cut(s) 1218
BsrDI GCAATG 1 cut(s) 924
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 3 cut(s) 51, 119, 710
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 2 cut(s) 264, 1024
BssMI GATC 4 cut(s) 394, 1031, 1046, 1306
BssT1I CCWWGG 2 cut(s) 264, 1024
Bst2UI CCWGG 3 cut(s) 1070, 1115, 1171
Bst4CI ACNGT 8 cut(s) 379, 385, 589, 700, 849, 887, 988, 1283
Bst6I CTCTTC 2 cut(s) 161, 551
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 492, 799, 931
BstDEI CTNAG 5 cut(s) 362, 601, 819, 1043, 1094
BstDSI CCRYGG 1 cut(s) 1024
BstF5I GGATG 4 cut(s) 330, 926, 1114, 1166
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 397, 1034, 1049, 1309
BstMAI GTCTC 2 cut(s) 793, 1218
BstMBI GATC 4 cut(s) 394, 1031, 1046, 1306
BstMWI GCNNNNNNNGC 5 cut(s) 186, 296, 676, 930, 1151
BstNI CCWGG 3 cut(s) 1070, 1115, 1171
BstSCI CCNGG 3 cut(s) 1068, 1113, 1169
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 4 cut(s) 198, 238, 319, 682
BstV2I GAAGAC 1 cut(s) 1281
BstX2I RGATCY 3 cut(s) 394, 1031, 1046
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 3 cut(s) 394, 1031, 1046
BsuRI GGCC 5 cut(s) 140, 153, 270, 1068, 1113
BtgI CCRYGG 1 cut(s) 1024
BtsCI GGATG 4 cut(s) 330, 926, 1114, 1166
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 6 cut(s) 112, 833, 865, 883, 984, 1275
Cac8I GCNNGC 3 cut(s) 492, 799, 931
CciI TCATGA 1 cut(s) 39
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 151, 268
Csp6I GTAC 2 cut(s) 88, 833
CviAII CATG 7 cut(s) 40, 422, 680, 726, 802, 910, 1025
CviQI GTAC 2 cut(s) 88, 833
DdeI CTNAG 5 cut(s) 362, 601, 819, 1043, 1094
DpnI GATC 4 cut(s) 396, 1033, 1048, 1308
DpnII GATC 4 cut(s) 394, 1031, 1046, 1306
DraIII CACNNNGTG 1 cut(s) 1009
DriI GACNNNNNGTC 1 cut(s) 1285
EaeI YGGCCR 2 cut(s) 1066, 1111
Eam1104I CTCTTC 2 cut(s) 161, 551
Eam1105I GACNNNNNGTC 1 cut(s) 1285
EarI CTCTTC 2 cut(s) 161, 551
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 2 cut(s) 264, 1024
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 2 cut(s) 552, 909
Eco31I GGTCTC 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 2 cut(s) 695, 841
EcoICRI GAGCTC 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 151, 268
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 1068, 1113, 1169
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 264, 1024
EcoT22I ATGCAT 1 cut(s) 926
EcoT38I GRGCYC 2 cut(s) 552, 909
ErhI CCWWGG 2 cut(s) 264, 1024
FaeI CATG 7 cut(s) 43, 425, 683, 729, 805, 913, 1028
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 39, 421, 679, 725, 801, 909, 1024
FauI CCCGC 1 cut(s) 989
FauNDI CATATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 4 cut(s) 187, 252, 308, 671
FokI GGATG 4 cut(s) 317, 933, 1121, 1153
FriOI GRGCYC 2 cut(s) 552, 909
Fsp4HI GCNGC 4 cut(s) 187, 252, 308, 671
FspBI CTAG 2 cut(s) 495, 917
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 187, 252, 308, 671
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 5 cut(s) 140, 153, 270, 1068, 1113
HapII CCGG 3 cut(s) 491, 692, 792
HhaI GCGC 1 cut(s) 307
Hin1II CATG 7 cut(s) 43, 425, 683, 729, 805, 913, 1028
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 2 cut(s) 285, 1176
HindII GTYRAC 2 cut(s) 285, 1176
HinfI GANTC 9 cut(s) 73, 119, 206, 433, 593, 823, 977, 1210, 1300
HpaII CCGG 3 cut(s) 491, 692, 792
HphI GGTGA 2 cut(s) 391, 706
Hpy166II GTNNAC 5 cut(s) 205, 285, 341, 703, 1176
Hpy188III TCNNGA 8 cut(s) 40, 133, 398, 553, 764, 1004, 1085, 1304
Hpy8I GTNNAC 5 cut(s) 205, 285, 341, 703, 1176
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 130, 151, 1261
HpyCH4III ACNGT 8 cut(s) 379, 385, 589, 700, 849, 887, 988, 1283
HpyCH4V TGCA 7 cut(s) 275, 356, 924, 929, 1014, 1120, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 296, 676, 930, 1151
HpyF3I CTNAG 5 cut(s) 362, 601, 819, 1043, 1094
Hsp92II CATG 7 cut(s) 43, 425, 683, 729, 805, 913, 1028
HspAI GCGC 1 cut(s) 305
KpnI GGTACC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Kzo9I GATC 4 cut(s) 394, 1031, 1046, 1306
LmnI GCTCC 6 cut(s) 9, 177, 403, 994, 1151, 1270
Lsp1109I GCAGC 4 cut(s) 198, 238, 319, 682
LweI GCATC 4 cut(s) 334, 343, 911, 1129
MaeI CTAG 2 cut(s) 495, 917
MaeIII GTNAC 3 cut(s) 379, 694, 912
MalI GATC 4 cut(s) 396, 1033, 1048, 1308
MboI GATC 4 cut(s) 394, 1031, 1046, 1306
MboII GAAGA 7 cut(s) 44, 148, 151, 568, 1041, 1144, 1281
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 3 cut(s) 394, 1031, 1046
MhlI GDGCHC 4 cut(s) 552, 909, 1258, 1275
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 9 cut(s) 35, 166, 414, 471, 500, 900, 948, 1161, 1203
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 3 cut(s) 113, 200, 602
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 7 cut(s) 106, 164, 394, 452, 552, 761, 866
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 1 cut(s) 926
MroNI GCCGGC 1 cut(s) 490
MroXI GAANNNNTTC 2 cut(s) 140, 168
MscI TGGCCA 1 cut(s) 1113
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 673, 735
MspI CCGG 3 cut(s) 491, 692, 792
MspR9I CCNGG 3 cut(s) 1070, 1115, 1171
MunI CAATTG 1 cut(s) 900
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 3 cut(s) 1070, 1115, 1171
MwoI GCNNNNNNNGC 5 cut(s) 186, 296, 676, 930, 1151
NaeI GCCGGC 1 cut(s) 492
NcoI CCATGG 1 cut(s) 1024
NdeI CATATG 1 cut(s) 279
NdeII GATC 4 cut(s) 394, 1031, 1046, 1306
NgoMIV GCCGGC 1 cut(s) 490
NlaIII CATG 7 cut(s) 43, 425, 683, 729, 805, 913, 1028
NlaIV GGNNCC 5 cut(s) 11, 89, 152, 731, 796
NmuCI GTSAC 2 cut(s) 379, 694
NsiI ATGCAT 1 cut(s) 926
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PctI GAATGC 1 cut(s) 1107
PdiI GCCGGC 1 cut(s) 492
PdmI GAANNNNTTC 2 cut(s) 140, 168
PfeI GAWTC 6 cut(s) 73, 433, 823, 977, 1210, 1300
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 188, 253, 309, 672
PleI GAGTC 3 cut(s) 113, 200, 601
PpsI GAGTC 3 cut(s) 113, 200, 601
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 3 cut(s) 1068, 1113, 1169
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 3 cut(s) 1068, 1113, 1169
PspN4I GGNNCC 5 cut(s) 11, 89, 152, 731, 796
PspPI GGNCC 2 cut(s) 151, 268
PsuI RGATCY 3 cut(s) 394, 1031, 1046
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 2 cut(s) 89, 834
RsaNI GTAC 2 cut(s) 88, 833
SacI GAGCTC 1 cut(s) 909
SatI GCNGC 4 cut(s) 187, 252, 308, 671
Sau3AI GATC 4 cut(s) 394, 1031, 1046, 1306
Sau96I GGNCC 2 cut(s) 151, 268
SchI GAGTC 3 cut(s) 113, 200, 602
ScrFI CCNGG 3 cut(s) 1070, 1115, 1171
SduI GDGCHC 4 cut(s) 552, 909, 1258, 1275
SfaNI GCATC 4 cut(s) 334, 343, 911, 1129
SfcI CTRYAG 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 398, 1085
SmoI CTYRAG 2 cut(s) 398, 1085
Sse9I AATT 9 cut(s) 35, 166, 414, 471, 500, 900, 948, 1161, 1203
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 3 cut(s) 513, 733, 982
SspMI CTAG 2 cut(s) 495, 917
SstI GAGCTC 1 cut(s) 909
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 1068, 1113, 1169
StyI CCWWGG 2 cut(s) 264, 1024
TaaI ACNGT 8 cut(s) 379, 385, 589, 700, 849, 887, 988, 1283
TaqI TCGA 2 cut(s) 63, 162
TasI AATT 9 cut(s) 35, 166, 414, 471, 500, 900, 948, 1161, 1203
TfiI GAWTC 6 cut(s) 73, 433, 823, 977, 1210, 1300
TscAI CASTG 6 cut(s) 119, 833, 865, 883, 991, 1282
TseFI GTSAC 2 cut(s) 379, 694
TseI GCWGC 4 cut(s) 186, 251, 307, 670
Tsp45I GTSAC 2 cut(s) 379, 694
TspDTI ATGAA 5 cut(s) 15, 28, 56, 696, 770
TspRI CASTG 6 cut(s) 119, 833, 865, 883, 991, 1282
Van91I CCANNNNNTGG 1 cut(s) 1148
XapI RAATTY 4 cut(s) 35, 166, 500, 1203
XmiI GTMKAC 1 cut(s) 702
XmnI GAANNNNTTC 2 cut(s) 140, 168
XspI CTAG 2 cut(s) 495, 917
Zsp2I ATGCAT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.